
genewise output
Score 125.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002299_2.0   81 KLYAGAILEVCGXKLGRFPQVQ                          F 
                     +LYAGAILEVCGXKLGRFPQVQ                          F 
                     QLYAGAILEVCGXKLGRFPQVQ          A:A[gct]        F 
KE778117.1       688 cctgggacggtgtatgatccgcGGTATATA  Intron 1   AAGCTt 
                     atacgcttatgggatggtcata <1-----[755  : 7456]-1>  t 
                     gataatttactaaagggctaca                          c 


SPP00002299_2.0  105 VRSDKPKLFRGLQIK                       YVRGSDPVLKL 
                     VRSDKPKLFRGLQIK                       YVRGSDPVLKL 
                     VRSDKPKLFRGLQIK                       YVRGSDPVLKL 
KE778117.1      7462 gaagacactagccaaGTAAAGT  Intron 2   TAGtgcgtgcgcac 
                     tggaacattggtata<0-----[7507 : 8156]-0>atggcacttat 
                     cgttacaacaaaacg                       ttttactaagt 


SPP00002299_2.0  131 LDDNGNIAEELSILKWNTDSVEEFLNEKLERM                  
                     LDDNGNIAEELSILKWNTDSVEEFL+EKLERM                  
                     LDDNGNIAEELSILKWNTDSVEEFLSEKLERM                  
KE778117.1      8190 tggagaagggcaacataagagggtcagatgca                  
                     taaagatcaatgttagacagtaattgaatagt                  
                     gtctgcttaaacccggcactaaacataggacg                  


//
Making a A in phase 1 intron
>KE778117.1.pep
QLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE
LSILKWNTDSVEEFLSEKLERM
//
>KE778117.1.[688:8285].sp
CAGCTATATGCAGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAA
GTCCAAGCTTTCGTCAGGAGTGATAAACCCAAACTATTCAGAGGACTACAAATCAAGTAT
GTTCGTGGTTCAGACCCTGTACTAAAGCTTTTGGATGACAATGGGAACATTGCTGAAGAA
CTAAGCATCCTCAAGTGGAACACAGACAGTGTAGAAGAATTCCTAAGTGAAAAGTTGGAA
CGCATG
//
KE778117.1	GeneWise	match	688	8285	125.74	+	.	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	cds	688	754	0.00	+	0	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	intron	755	7456	0.00	+	.	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	cds	7457	7506	0.00	+	2	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	intron	7507	8156	0.00	+	.	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	cds	8157	8285	0.00	+	0	KE778117.1-genewise-prediction-1
//

genewise output
Score 14.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002299_2.0    8 WMGPAFGLRLLMASILHVVSAFGAEFS                       
                     ++ P+F +  L++   H  S +G  FS                       
                     YVNPSFAVLTLLS---HYSSVYGGNFS                       
KE778117.1    -10273 tgacatggtacct   ctttgtggatt                       
                     atacgtcttcttc   aacctaggatc                       
                     tctcttatactgc   ctttattccct                       


//
>KE778117.1.pep
YVNPSFAVLTLLSHYSSVYGGNFS
//
>KE778117.1.[10273:10200].sp
TATGTCAATCCCAGTTTTGCAGTTTTAACCCTTCTGTCCCACTATTCTTCTGTATATGGT
GGCAACTTCTCT
//
KE778117.1	GeneWise	match	10273	10202	16.29	-	.	KE778117.1-genewise-prediction-1
KE778117.1	GeneWise	cds	10273	10202	0.00	-	0	KE778117.1-genewise-prediction-1
//
