
genewise output
Score 348.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0    1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
KE815164.1:subs 9497 aggattaggGTGAGTG  Intron 1   CAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[9524 :10002]-0>tacataaattcgctcct 
                     gaccgggct                       gaccgcgccccgctccg 


SPP00000146_2.0   27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
KE815164.1:subs10054 ggagaagaaacaccaGGGTATATT  Intron 2   CAGGacggtttg 
                     gacttgtattgagtc  <2-----[10101:14086]-2> tccgagtt 
                     agtggccgtcacatt                          catcccta 


SPP00000146_2.0   51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
KE815164.1:subs14112 gtggtgaggattcaaagacccggacGTAAGGA  Intron 3   CAGg 
                     atcatcccaagtaatagactcgccc<0-----[14187:14797]-0>c 
                     acatgcacggtgtatcgactaacat                       a 


SPP00000146_2.0   77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
KE815164.1:subs14801 actacatgatgaccgaAGGTAAGTA  Intron 4   TAGCcgttctg 
                     agtataaccagaacaa  <2-----[14851:16427]-2> caacttt 
                     attagctcttgaaatt                          tgccctg 


SPP00000146_2.0  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
KE815164.1:subs16450 ggcacgggggactgttgagtcttcggaggtgcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gcgcatgctcgatacccacccctgacggtgcgacgt              


SPP00000146_2.0  137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKFTDELEQKRALTECQGA 
                                K:K[aaa]       GYGFVKFTDELEQKRALTECQGA 
KE815164.1:subs16558 AAGTAAGGC  Intron 5   CAGAgtgtgataggcgcacgcagtcgg 
                       <2-----[16560:17593]-2> gagttatcaataaagctcagagc 
                                               ctttgacatagaggacgagcgaa 


SPP00000146_2.0  161 VGLGSKPVRLSVAIPKA                                 
                     VGLGSKPVRLSVAIPKA                                 
                     VGLGSKPVRLSVAIPKA                                 
KE815164.1:subs17664 ggcgtacgccaggacag                                 
                     tgtgcactgtgtctcac                                 
                     aaggtaagggcgattag                                 


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>KE815164.1:subseq(8696,20119).pep
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA
//
>KE815164.1:subseq(8696,20119).[9497:17714].sp
ATGGCAGCCAGCTTGTGGATGGGCGATCTGGAACCCTACATGGACGAGAACTTCATCTCC
AGGGCCTTTGCCACCATGGGAGAGACTGTGATGAGCGTCAAGATTATCCGAAACCGACTT
ACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCACAGCCGAGAAG
TGTTTGCATAAAATTAACGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAATAGCCCTGAGTACTCCCTCTTTGTG
GGGGACCTGACCCCAGATGTGGACGATGGCATGCTATATGAATTCTTCGTCAAAGTCTAC
CCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAAGGCTATGGT
TTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACAGAGTGCCAGGGAGCA
GTAGGACTGGGGTCTAAACCAGTGCGGCTGAGCGTGGCAATTCCTAAAGCG
//
KE815164.1:subseq(8696,20119)	GeneWise	match	9497	17714	348.29	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	9497	9523	0.00	+	0	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	intron	9524	10002	0.00	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	10003	10100	0.00	+	0	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	intron	10101	14086	0.00	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	14087	14186	0.00	+	1	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	intron	14187	14797	0.00	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	14798	14850	0.00	+	0	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	intron	14851	16427	0.00	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	16428	16559	0.00	+	1	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	intron	16560	17593	0.00	+	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	17594	17714	0.00	+	1	KE815164.1:subseq(8696,20119)-genewise-prediction-1
//

genewise output
Score 15.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0   89 QPDNSPEYSLFVGD                                    
                     QP  SP+ ++++GD                                    
                     QPKLSPDVAMLLGD                                    
KE815164.1:sub-18380 ccattcgggatcgg                                    
                     acatccatctttga                                    
                     aaagtattaggaat                                    


//
>KE815164.1:subseq(8696,20119).pep
QPKLSPDVAMLLGD
//
>KE815164.1:subseq(8696,20119).[18380:18337].sp
CAACCAAAATTGTCTCCAGATGTTGCAATGTTGCTAGGAGAT
//
KE815164.1:subseq(8696,20119)	GeneWise	match	18380	18339	15.98	-	.	KE815164.1:subseq(8696,20119)-genewise-prediction-1
KE815164.1:subseq(8696,20119)	GeneWise	cds	18380	18339	0.00	-	0	KE815164.1:subseq(8696,20119)-genewise-prediction-1
//
