genewise output
Score 16.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000109_2.0   27 LALLLANTDVFLSKPQKAALEYLEDID                       
                     ++LLL  T  F + P K  +E+  DI+                       
                     MSLLLKATYRFNAIPIKCPMEFFIDIE                       
KE816858.1:subs 4873 attccagatatagacaatcagttagag                       
                     tctttaccagtactctagctatttata                       
                     gcgacaaccacccctcgtagatcataa                       


//
>KE816858.1:subseq(7960,30110).pep
MSLLLKATYRFNAIPIKCPMEFFIDIE
//
>KE816858.1:subseq(7960,30110).[4873:4953].sp
ATGTCCTTGCTACTCAAAGCAACCTACAGATTCAACGCCATCCCTATCAAGTGTCCAATG
GAATTTTTCATAGATATAGAA
//
KE816858.1:subseq(7960,30110)	GeneWise	match	4873	4953	16.51	+	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	4873	4953	0.00	+	0	KE816858.1:subseq(7960,30110)-genewise-prediction-1
//

genewise output
Score 430.79 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000109_2.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFLQDPS FTMGMWSIG GALGAAALAL+LANTD+FLSKP +A LEYL 
                     MSFLQDPSSFTMGMWSIGMGALGAAALALVLANTDIFLSKPLQATLEYL 
KE816858.1:sub-24027 attccgcattaagattagaggcggggcgcgcgaagatctacccgacgtc 
                     tcttaacgctctgtgctgtgctgccctctttcacatttcactacctaat 
                     gtccgtatcccgggggttggcggttcgagcgccacatgcgcgaacggtg 


SPP00000109_2.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     E+IDLKTLEK                          PRTFKAKELWEKN 
                     EEIDLKTLEK          E:E[gaa]        PRTFKAKELWEKN 
KE816858.1:sub-23880 ggagcaacgaGGTAAGCA  Intron 1   CAGAAcaatagagctgaa 
                     aatatactaa <1-----[23849:22046]-1>  cgctacaatgaaa 
                     gaacgaaggg                          agccaaggcgagt 


SPP00000109_2.0   74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
KE816858.1:sub-22004 gggaaggcacgttctcgGTGAGCA  Intron 2   CAGggggcttca 
                     gctttctggcggttgga<0-----[21953:18869]-0>accatccta 
                     atgtgtgggacttctag                       gtgcgccgg 


SPP00000109_2.0  100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                       LD+LGVPLYAVVKE IRTEVKDFQPYFKGEIFLDEK            
                     PKLDELGVPLYAVVKEQIRTEVKDFQPYFKGEIFLDEK            
KE816858.1:sub-18841 catggcggcctgggagcaaaggagtccttaggatcgga            
                     cataatgtctacttaaatgcataatacatagatttaaa            
                     cggcggtccctagagagcgcaggccgttcaaaccgcag            


SPP00000109_2.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQRRKMMFMGF+RLGVW NFF 
                                            KKFYGPQRRKMMFMGFVRLGVWNNFF 
KE816858.1:sub-18727 GTGCATG  Intron 3   CAGaattgccacaaatagtgccggtaatt 
                     <0-----[18727:18064]-0>aatagcaggattttgttgtgtgaatt 
                                            aactccagggggtgatcggtggcccc 


SPP00000109_2.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RA NGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RARNGGFSGNLEGEGFILGGVFVVGSGKQ                     
KE816858.1:sub-17985 cgcaggttgatggggtacgggtgggtgacGTAAATG  Intron 4    
                     gcgaggtcgatagagtttggttttgcgaa<0-----[17898:15111] 
                     gcgtacctacgataccccgatcggaaagg                     


SPP00000109_2.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        GILLEHREKEFGDKVNL+SVL+AA+ IKPQT ASEKK          
                        GILLEHREKEFGDKVNLVSVLKAARKIKPQTSASEKK          
KE816858.1:sub-15113 TAGgaccgccgagtggagacgtgcaggaaaaccatgtgaa          
                     -0>gtttaagaaatgaatattcttaccgatacaccccaaa          
                        ctttgcaaaatataacatttgaatggcaaatacagaa          


//
Making a E in phase 1 intron
>KE816858.1:subseq(7960,30110).pep
MSFLQDPSSFTMGMWSIGMGALGAAALALVLANTDIFLSKPLQATLEYLEEIDLKTLEKE
PRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEQIRTE
VKDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFVRLGVWNNFFRARNGGFSGNLEGEGFI
LGGVFVVGSGKQGILLEHREKEFGDKVNLVSVLKAARKIKPQTSASEKK
//
>KE816858.1:subseq(7960,30110).[24027:14998].sp
ATGTCTTTCCTCCAGGATCCAAGTTCCTTCACCATGGGGATGTGGTCGATTGGTATGGGG
GCCCTGGGGGCTGCTGCCCTGGCACTGGTCCTGGCCAACACAGACATATTTCTGTCCAAG
CCCCTGCAAGCAACCCTGGAGTATCTGGAGGAAATAGACCTGAAAACACTGGAGAAGGAA
CCAAGGACCTTCAAAGCAAAGGAGCTCTGGGAAAAGAATGGAGCTGTGATTATGGCTGTG
CGGAGGCCAGGCTGTTTTCTCTGTCGAGAGGAGGCTGCGGACCTGTCCTCCCTGAAGCCC
AAGTTGGACGAGCTGGGTGTCCCCCTCTATGCAGTGGTAAAGGAACAGATCAGGACCGAA
GTGAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGACGAAAAGAAAAAATTC
TATGGCCCCCAAAGGCGGAAGATGATGTTTATGGGATTTGTCCGGCTGGGTGTGTGGAAC
AACTTCTTCCGGGCCCGGAATGGAGGCTTCTCTGGAAACTTGGAAGGTGAAGGCTTCATC
CTCGGGGGAGTTTTCGTGGTGGGATCAGGAAAGCAGGGCATTCTTCTTGAGCACCGAGAA
AAAGAATTTGGAGATAAAGTAAACCTAGTTTCTGTTCTGAAAGCAGCTAGGAAGATCAAA
CCACAAACTTCAGCCTCAGAGAAAAAA
//
KE816858.1:subseq(7960,30110)	GeneWise	match	24027	15000	430.79	-	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	24027	23850	0.00	-	0	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	intron	23849	22046	0.00	-	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	22045	21954	0.00	-	2	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	intron	21953	18869	0.00	-	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	18868	18728	0.00	-	0	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	intron	18727	18064	0.00	-	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	18063	17899	0.00	-	0	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	intron	17898	15111	0.00	-	.	KE816858.1:subseq(7960,30110)-genewise-prediction-1
KE816858.1:subseq(7960,30110)	GeneWise	cds	15110	15000	0.00	-	0	KE816858.1:subseq(7960,30110)-genewise-prediction-1
//