genewise output
Score 14.78 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000106_2.0   71 IEGENYLPQPIYRHIAS                                 
                     I G+  +P  IY++I S                                 
                     IIGQQKIPTHIYQYILS                                 
AWHC01032017.1  2661 aagccaacacatctata                                 
                     ttgaaatccataaattg                                 
                     ttaagaattcatgttgc                                 


//
>AWHC01032017.1.pep
IIGQQKIPTHIYQYILS
//
>AWHC01032017.1.[2661:2711].sp
ATTATTGGACAACAGAAAATACCTACTCACATATATCAGTATATTTTGAGC
//
AWHC01032017.1	GeneWise	match	2661	2711	14.78	+	.	AWHC01032017.1-genewise-prediction-1
AWHC01032017.1	GeneWise	cds	2661	2711	0.00	+	0	AWHC01032017.1-genewise-prediction-1
//

genewise output
Score 179.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000106_2.0   50 GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVI QRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVIRQRYPDIRIEGENYLPQPIY                 
AWHC01032017.1 -2406 gtacgtggtacgaacctcgacagggatccccat                 
                     gaggttaaatgttgagacatgtagaaatcacta                 
                     ttgggtggcgattgggcaccctaagtcctaaat                 


SPP00000106_2.0   83                           HIASFLSVFKLVLIGLIIVGKDP 
                                               HIASFLSVFKLVLIGLIIVGKDP 
                                R:R[aga]       HIASFLSVFKLVLIGLIIVGKDP 
AWHC01032017.1 -2307 AGGTAAGTA  Intron 1   TAGAcagttctgtacgtagtaaggagc 
                       <2-----[2305 : 1773]-2> atccttcttattttgttttgaac 
                                               caatcgaccaaaaacaattcgtt 


SPP00000106_2.0  107 FAFFGMQAPSIWQWGQENKV                              
                     FAFFGMQAPSIWQWGQENKV                              
                     FAFFGMQAPSIWQWGQENKV                              
AWHC01032017.1 -1702 tgttgacgcaatctgcgaag                              
                     tcttgtaccgtgaggaaaat                              
                     ttctcgattccgagcaacga                              


//
Making a R in phase 2 intron
>AWHC01032017.1.pep
GYRRVFEEYMRVIRQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAF
FGMQAPSIWQWGQENKV
//
>AWHC01032017.1.[2406:1641].sp
GGTTATAGGCGGGTGTTTGAGGAGTACATGCGAGTTATTAGGCAGCGGTACCCAGACATC
CGCATTGAAGGAGAGAATTACCTCCCTCAACCAATATATAGACACATAGCATCTTTCCTG
TCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGATCCTTTTGCTTTC
TTTGGCATGCAAGCTCCTAGCATCTGGCAATGGGGCCAAGAAAACAAGGTA
//
AWHC01032017.1	GeneWise	match	2406	1643	179.28	-	.	AWHC01032017.1-genewise-prediction-1
AWHC01032017.1	GeneWise	cds	2406	2306	0.00	-	0	AWHC01032017.1-genewise-prediction-1
AWHC01032017.1	GeneWise	intron	2305	1773	0.00	-	.	AWHC01032017.1-genewise-prediction-1
AWHC01032017.1	GeneWise	cds	1772	1643	0.00	-	1	AWHC01032017.1-genewise-prediction-1
//