genewise output
Score 266.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000091_2.0   49 LAKSEWQKKLTPEQFYVTREKGTEP                       P 
                     L KSEWQKKLTPEQFYVTREKGTEP                       P 
                     LTKSEWQKKLTPEQFYVTREKGTEP                       P 
KE755266.1:subs 7743 caaagtcaacacgcttgaagagagcGTAAGCT  Intron 1   CAGc 
                     tcagagaaatccaatatcgaagcac<0-----[7818 :12988]-0>c 
                     ccgcagagggtagaccccaaaatat                       a 


SPP00000091_2.0   75 FSGIYLNNKEAGMYHCVCCDSPLF                          
                     FSGIYLNNKE+GMYHCVCCD+PLF                          
                     FSGIYLNNKESGMYHCVCCDNPLF           S:S[agt]       
KE755266.1:subs12992 tagatcaaagtgatctgttgacctAGGTGAGTC  Intron 2       
                     tggtataaaacgtaagtggaactt  <2-----[13066:18185]    
                     ctgccgtcgagagtctgctccacc                          


SPP00000091_2.0   99     SEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEV 
                         SEKKYCSGTGWPSFSEAHG SGSDES+TGILRR+DTSLGS RTEV 
                         SEKKYCSGTGWPSFSEAHGASGSDESNTGILRRVDTSLGSVRTEV 
KE755266.1:subs18183 CAGTtgaatttgagtctttggcggtgtggaaagacacggatcgtgcagg 
                     -2> caaaagcgcggcctcacagccgcaagacgttggtacctgctgcat 
                         tgagccccgggtgttgcttgtcttacccccgacgccagagtcagt 


SPP00000091_2.0  145 VCKQ                       CEAHLGHVFPDGPGPNGQRFCI 
                     VCK+                       C AHLGHVFPDGPGP GQRFCI 
                     VCKK                       CAAHLGHVFPDGPGPAGQRFCI 
KE755266.1:subs18322 gtaaGTAAGTT  Intron 3   CAGtggccgcgtcggcgcggcatta 
                     tgaa<0-----[18334:19243]-0>gccatgattcagcgccgagtgt 
                     ccgg                       tatccctgttcatgtttggtcc 


SPP00000091_2.0  171 NSVALKFKP                                         
                     NSVALKFKP                                         
                     NSVALKFKP                                         
KE755266.1:subs19310 aaggtatac                                         
                     agtctatac                                         
                     ccgaggcgc                                         


//
Making a S in phase 2 intron
>KE755266.1:subseq(0,30074).pep
LTKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKESGMYHCVCCDNPLFSSEKKYCSGT
GWPSFSEAHGASGSDESNTGILRRVDTSLGSVRTEVVCKKCAAHLGHVFPDGPGPAGQRF
CINSVALKFKP
//
>KE755266.1:subseq(0,30074).[7743:19336].sp
CTCACCAAGAGCGAATGGCAAAAGAAGCTGACTCCAGAGCAATTCTACGTCACCAGAGAA
AAAGGAACTGAACCTCCATTCAGTGGGATCTACCTGAATAACAAGGAATCGGGAATGTAT
CACTGTGTGTGCTGTGACAACCCACTCTTCAGTTCTGAGAAAAAGTACTGCTCCGGCACG
GGGTGGCCTTCGTTTTCTGAGGCCCATGGTGCGTCTGGCTCTGATGAAAGCAACACCGGC
ATCCTGAGACGCGTGGACACCTCACTGGGATCGGTTCGCACAGAGGTTGTCTGCAAGAAG
TGTGCAGCTCACCTCGGCCATGTGTTTCCTGACGGACCTGGGCCTGCTGGTCAGAGGTTT
TGCATCAACAGCGTGGCATTGAAGTTCAAGCCC
//
KE755266.1:subseq(0,30074)	GeneWise	match	7743	19336	266.82	+	.	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	cds	7743	7817	0.00	+	0	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	intron	7818	12988	0.00	+	.	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	cds	12989	13065	0.00	+	0	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	intron	13066	18185	0.00	+	.	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	cds	18186	18333	0.00	+	1	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	intron	18334	19243	0.00	+	.	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	cds	19244	19336	0.00	+	0	KE755266.1:subseq(0,30074)-genewise-prediction-1
//

genewise output
Score 16.95 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000091_2.0  158 PDGPGPNG                                          
                     P GPGP+G                                          
                     PAGPGPSG                                          
KE755266.1:sub-19293 cggcgctg                                          
                     ccgcgccg                                          
                     aacatgaa                                          


//
>KE755266.1:subseq(0,30074).pep
PAGPGPSG
//
>KE755266.1:subseq(0,30074).[19293:19268].sp
CCAGCAGGCCCAGGTCCGTCAGGA
//
KE755266.1:subseq(0,30074)	GeneWise	match	19293	19270	16.95	-	.	KE755266.1:subseq(0,30074)-genewise-prediction-1
KE755266.1:subseq(0,30074)	GeneWise	cds	19293	19270	0.00	-	0	KE755266.1:subseq(0,30074)-genewise-prediction-1
//