
genewise output
Score 715.58 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002310_2.0    1 MWRSLGLALALCLLPWGGTESQEQSSFCKQPPAWSIGDQDPMLNSYGSV 
                     MWRSLGLALALCLLPWGGTESQEQSSFCKQPPAWSIGDQDPMLNSYGSV 
                     MWRSLGLALALCLLPWGGTESQEQSSFCKQPPAWSIGDQDPMLNSYGSV 
KE762614.1:subs12449 ataacgtgcgctccctggagacgcatttacccgtaaggcgcacattgtg 
                     tgggtgtctctgttcgggcagaaagctgaacccggtgaaacttacagct 
                     ggacgcgcgtctcctgggaacggaccttggtacgcactacaggcattat 


SPP00002310_2.0   50 TVVALLQASXYFCILQSS                          LEDLR 
                     TVVALLQASXYFCILQSS                          LEDLR 
                     TVVALLQASXYFCILQSS           S:S[agt]       LEDLR 
KE762614.1:subs12596 agggcccgattttaccttAGGTAAGAT  Intron 1   TAGTtggcc 
                     cttcttacggatgttacc  <2-----[12652:13530]-2> taatg 
                     tatttcaccactctaaat                          gacga 


SPP00002310_2.0   74 VKLEEEGFSNISYVIVNHQGISSRLKYTHLKNKVSEHISVYQQEETQTD 
                     VKLEEEGFSNISYVIVNHQGISSRLKY HLKNKVSEHISVYQQEE QTD 
                     VKLEEEGFSNISYVIVNHQGISSRLKYMHLKNKVSEHISVYQQEENQTD 
KE762614.1:subs13547 gacggggttaattgagaccgattctataccaaagtgcatgtccggacag 
                     tataaagtcatcatttaaagtccgtaatataaatcaatctaaaaaaaca 
                     aagggattttttttttttaacttaaatgttatgtagtttttaaaacaat 


SPP00002310_2.0  123 VWTLLNGNKDDFLIYD                          CGRLVYH 
                     VWTLLNGNKDDFLIYD                          CGRLVYH 
                     VWTLLNGNKDDFLIYD           R:R[aga]       CGRLVYH 
KE762614.1:subs13694 gtactagaaggtcatgAGGTGTGTA  Intron 2   TAGAtgccgtc 
                     tgcttagaaaatttaa  <2-----[13744:15013]-2> gggttaa 
                     cgtcatacatcccatc                          tcttatc 


SPP00002310_2.0  147 LGLPFSSLSFLYVEEAIKIAYCEDKCGNCSLT                  
                     +GLPFSSLSFLYVEEAIKIAYCEDKCGNCSLT                  
                     IGLPFSSLSFLYVEEAIKIAYCEDKCGNCSLT                  
KE762614.1:subs15036 agtcttacatttggggaaagttggatgattca                  
                     tgtctcgtgttataactatcagaaaggagctc                  
                     ttgtctcatcataaactgttctacatacctcg                  


SPP00002310_2.0  179                        TLEDEGICKNVSLVTVEQTTETPQPH 
                                            TLEDEG CKNVSLVTVEQTTE PQPH 
                                            TLEDEGACKNVSLVTVEQTTEAPQPH 
KE762614.1:subs15132 GTATTTT  Intron 3   CAGacgggggtaagtcgaggcaaggcccc 
                     <0-----[15132:17645]-0>ctaaagcgaatcttctaaccaccaca 
                                            cgatacctatatgttgaaatgtaaat 


SPP00002310_2.0  205 H--HHHRHRHRHHHHVHQHHHKHEHQHIRNGQLSENKQPEALSAPEHPP 
                     H  HHHRH HRHHHH+HQHH KHEHQHIR GQLSENKQPEA +A EHPP 
                     HHHHHHRHHHRHHHHIHQHHQKHEHQHIRKGQLSENKQPEAPNASEHPP 
KE762614.1:subs17724 cccccccccccccccacccccacgcccaaagcctgaaccggcagtgccc 
                     aaaaaagaaagaaaataaaaaaaaaaatgagatcaaaacaccaccaacc 
                     ttctctctctctctctcgttagtgtgctgacgtagtgaaaaatatgtct 


SPP00002310_2.0  252 PLGLHNHHKLKDPQIHGNSNDCYTPESENLQLSLSQKKLCGKRCINPLL 
                     PLGLHNH+KLKDPQIHG+SN+CY PESEN+QLSLSQKK+CGKRCINPLL 
                     PLGLHNHYKLKDPQIHGHSNNCYMPESENVQLSLSQKKVCGKRCINPLL 
KE762614.1:subs17871 ccgccactacagccacgctaattacgagagcctctcaagtgaataactc 
                     ctgtaaaaataacatagacaagatcagaatatctcaaatggaggtactt 
                     cacttcctgcgcaaatttaccctgaatatgaattaagactagatataac 


SPP00002310_2.0  301 CKLLKDSKLAPSSCCCHCRHLIFEKTGPAITXQCKEKLPSLCSXQGLWA 
                     CKLLKDSKLAPSSCC HCRHLIFEKTGPAITXQCKEKLPSLCSXQGLWA 
                     CKLLKDSKLAPSSCCXHCRHLIFEKTGPAITXQCKEKLPSLCSXQGLWA 
KE762614.1:subs18018 tatcagtatgcaatttctcccatgaagcgaatctagacctttatcgctg 
                     gattaacatccgggggaggatttaacgcctcgagaaatcctgggagtgc 
                     cggcataggtttcccattatgataaagtaccagtaaacctatcaggtga 


SPP00002310_2.0  350 EENVIES                                           
                     EENVIES                                           
                     EENVIES                                           
KE762614.1:subs18165 ggagagt                                           
                     aaattac                                           
                     ggcctat                                           


//
Making a S in phase 2 intron
Making a R in phase 2 intron
>KE762614.1:subseq(1348,30137).pep
MWRSLGLALALCLLPWGGTESQEQSSFCKQPPAWSIGDQDPMLNSYGSVTVVALLQASXY
FCILQSSSLEDLRVKLEEEGFSNISYVIVNHQGISSRLKYMHLKNKVSEHISVYQQEENQ
TDVWTLLNGNKDDFLIYDRCGRLVYHIGLPFSSLSFLYVEEAIKIAYCEDKCGNCSLTTL
EDEGACKNVSLVTVEQTTEAPQPHHHHHHHRHHHRHHHHIHQHHQKHEHQHIRKGQLSEN
KQPEAPNASEHPPPLGLHNHYKLKDPQIHGHSNNCYMPESENVQLSLSQKKVCGKRCINP
LLCKLLKDSKLAPSSCCXHCRHLIFEKTGPAITXQCKEKLPSLCSXQGLWAEENVIES
//
>KE762614.1:subseq(1348,30137).[12449:18185].sp
ATGTGGAGAAGCCTGGGCTTGGCCCTGGCTCTCTGTCTCCTCCCTTGGGGGGGGACAGAA
AGCCAGGAGCAAAGCTCCTTTTGTAAGCAGCCTCCAGCCTGGAGCATAGGCGATCAAGAC
CCAATGCTGAACTCATATGGTTCAGTTACTGTAGTTGCTCTTCTCCAAGCCAGCTGATAC
TTTTGCATTCTACAATCATCTAGTTTGGAAGACCTGCGAGTAAAACTGGAGGAGGAAGGT
TTTTCTAATATTTCTTATGTTATTGTTAATCATCAAGGAATCTCTTCTCGATTAAAATAT
ATGCATCTTAAAAATAAGGTTTCAGAGCATATTTCTGTTTATCAACAAGAAGAAAACCAA
ACAGATGTCTGGACTCTCTTAAATGGAAACAAAGATGACTTCCTCATATATGACAGATGT
GGCCGTCTTGTATATCACATTGGTTTGCCTTTCTCTAGCCTAAGTTTCTTATATGTAGAA
GAAGCCATTAAGATTGCTTACTGTGAAGACAAATGTGGAAACTGCTCTCTCACGACCCTG
GAAGATGAAGGCGCCTGTAAAAATGTATCTCTGGTTACTGTGGAACAAACAACTGAGGCT
CCACAACCACATCATCATCACCATCACCATCGCCATCACCATCGCCATCACCATCACATT
CACCAGCATCATCAAAAGCATGAGCATCAGCACATTAGGAAAGGCCAGCTTTCAGAGAAT
AAGCAACCAGAAGCACCAAATGCATCTGAGCATCCCCCTCCCCTAGGCCTTCATAACCAC
TATAAGCTCAAGGACCCACAAATACATGGTCATTCAAACAACTGCTATATGCCAGAAAGT
GAAAATGTGCAACTATCTCTTTCACAAAAGAAAGTCTGTGGAAAGAGATGTATAAATCCA
TTACTCTGCAAGTTGCTCAAAGATTCAAAGTTGGCTCCTAGTAGCTGCTGCTGACATTGT
CGACATCTGATATTTGAAAAAACAGGGCCTGCAATCACCTGACAGTGTAAAGAAAAACTC
CCCTCTTTATGTAGCTGACAGGGGCTTTGGGCAGAGGAGAACGTCATTGAATCT
//
KE762614.1:subseq(1348,30137)	GeneWise	match	12449	18185	716.58	+	.	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	cds	12449	12651	0.00	+	0	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	intron	12652	13530	0.00	+	.	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	cds	13531	13743	0.00	+	1	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	intron	13744	15013	0.00	+	.	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	cds	15014	15131	0.00	+	1	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	intron	15132	17645	0.00	+	.	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	cds	17646	18185	0.00	+	0	KE762614.1:subseq(1348,30137)-genewise-prediction-1
//

genewise output
Score 15.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002310_2.0    2 WRSL---GLALALCLLPWGGTESQEQS                       
                     WR L    L LA C  P   TESQ Q+                       
                     WRLLTKGALLLAFCPPPREETESQGQA                       
KE762614.1:sub-12544 taccaaggtccgttcccaggagacgcg                       
                     ggttcagctttctgcccgaacagagac                       
                     gggtaaatgcgtctccagggagcgcac                       


//
>KE762614.1:subseq(1348,30137).pep
WRLLTKGALLLAFCPPPREETESQGQA
//
>KE762614.1:subseq(1348,30137).[12544:12462].sp
TGGAGGCTGCTTACAAAAGGAGCTTTGCTCCTGGCTTTCTGTCCCCCCCCAAGGGAGGAG
ACAGAGAGCCAGGGCCAAGCC
//
KE762614.1:subseq(1348,30137)	GeneWise	match	12544	12464	17.98	-	.	KE762614.1:subseq(1348,30137)-genewise-prediction-1
KE762614.1:subseq(1348,30137)	GeneWise	cds	12544	12464	0.00	-	0	KE762614.1:subseq(1348,30137)-genewise-prediction-1
//
