
genewise output
Score 842.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_2.0  165 TATGERWELQLKGAGPTPFS                          QAD 
                     TA GERWELQLKGAGPTPFS                          QAD 
                     TAAGERWELQLKGAGPTPFS           R:R[aga]       QAD 
KE752061.1         1 aggggctgcccagggcacttAGGTGGGCG  Intron 1   CAGAcgg 
                     cccgaggatatagcgccctc  <2-----[63   : 7620]-2> aca 
                     gcccgcggggcgccgcgccc                          gcc 


SPP00000081_2.0  189 GRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPK 
                     GRKVLRSSIREFLCSEAMFHLG+PTTRAGACVTS+STVVRDVFYDGNPK 
                     GRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPK 
KE752061.1      7631 gcagcctaacgtctaggatccgacaacgggtgatctaggcggttggaca 
                     ggattgcgtgattggacttatgtcccgcgcgtccaccttgattaagaca 
                     ccgcgccccggcgccgcgccgccccggggcccgggcgggtcgccccccg 


SPP00000081_2.0  238 YEQCTVVLRVASTFI                          FGSFEIFK 
                      E C VVLRVA TF+                          FGSFEIFK 
                     QEPCAVVLRVAPTFL           R:R[agg]       FGSFEIFK 
KE752061.1      7778 cgctgggccggcatcAGGTAATGC  Intron 2   CAGGtgttgata 
                     aacgctttgtccctt  <2-----[7825 : 8985]-2> tgctatta 
                     gggcgcggtgccccc                          cgccgccg 


SPP00000081_2.0  262 SADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAF 
                      ADE TGRAGPSVGRNDIRVQ+LDYV+ +FYPEIQAAHA DSVQRNAAF 
                     PADESTGRAGPSVGRNDIRVQMLDYVVGTFYPEIQAAHAGDSVQRNAAF 
KE752061.1      9011 cgggaagcggcaggaagacgcacgtgggattcgacggcgggagcaaggt 
                     ccaagcggcgcgtggaatgtattaattgctacataccacgagtagacct 
                     ggcgcggcgcccgggcccctgggccgccgcctgcgcgcccccgggcccc 


SPP00000081_2.0  311 FRE                       VTRRTARMVAEWQCVGFCHGVLN 
                     FRE                       VTRRTARMVAEWQCVGFCHGVLN 
                     FRE                       VTRRTARMVAEWQCVGFCHGVLN 
KE752061.1      9158 tcgGTGCGCG  Intron 3   CAGgaccagcagggtctggttcggca 
                     tga<0-----[9167 : 9794]-0>tcggccgttcagagtgtgagtta 
                     ccg                       gatcacgggcgggtccccccccc 


SPP00000081_2.0  337 TDNMSILGLTIDYGPFGFLD                          YDP 
                     TDNMSI+GLTIDYGPFGFLD                           DP 
                     TDNMSIVGLTIDYGPFGFLD           R:R[agg]       GDP 
KE752061.1      9864 agaaaaggcaagtgctgtcgAGGTGAGAT  Intron 4   CAGGggc 
                     caatgttgtctaagctgtta  <2-----[9926 :10308]-2> gac 
                     gccgccggcccccgccccgc                          tcc 


SPP00000081_2.0  361 DHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLEL-----GEA 
                     DHVCNASDN GRY YSKQPEVC+WNLRKLAEAL PELPL L     G A 
                     DHVCNASDNAGRYTYSKQPEVCKWNLRKLAEALAPELPLALAAVGAG!A 
KE752061.1     10319 gcgtagtgaggctataaccggtataccacgggcgcgcccgcgggggg4g 
                     aatgaccaacggacagaacatgagatgatcactccatctctcctgcg c 
                     ccgcccccctgccgccggcggcggcggggcgcggcggggggtcgctc c 


SPP00000081_2.0  405 ILAEEFDAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT    
                     +LAEE+DAEF+RHYL KMRRKLGLV  E EED ALV++LLETM LT    
                     VLAEEYDAEFRRHYLHKMRRKLGLVCAEREEDAALVARLLETMQLT    
KE752061.1     10467 gcgggtgggtcactccaacaacgcgtggcgggggcggcccgaacca    
                     ttcaaaacatggaataatggatgttgcagaaaccttcgttactatc    
                     cgcggcccgccgccgcggcgggccgccggggccgggcggggcgggc    


SPP00000081_2.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTF LLSSFPV  E+PGLA 
                               G:G[ggc]        ADFTNTFCLLSSFPVGPEAPGLA 
KE752061.1     10605 GGTGAGCG  Intron 5   CAGGCggtaaattccattcggcggcgcg 
                      <1-----[10606:13465]-1>  catcactgttgctctgcaccgtc 
                                               tcccccccggcccgggggagcgc 


SPP00000081_2.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     ++L  L  QCASLEELRLAFRPQMDP                        
                     DILTALTAQCASLEELRLAFRPQMDP           R:R[cgg]     
KE752061.1     13537 gatagcagctgtcggcacgtcccagcCGGTGGGTA  Intron 6     
                     attcctccagcctaatgtctgcatac  <2-----[13617:14512]  
                     ccgcggcagtccggggacccccggcc                        


SPP00000081_2.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMML LAQSNPQLF L+G++  IA+ELERVEQQSRLEQLS AE 
                         QLSMMLTLAQSNPQLFTLLGSQTSIAKELERVEQQSRLEQLSPAE 
KE752061.1     14510 CAGGcctaacacgctaccctaccgtcaaagagcgcggcctccgccacgg 
                     -2> atctttctcacacattcttgcacgtcaatagtaaacgtaatgcca 
                         gccgggggggccggccggccgggccaggggtggggggggggcggg 


SPP00000081_2.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     L S N+ HWA WLQ Y                          ARL+KD  
                     LLSTNKDHWATWLQEY           R:R[agg]       ARLEKDR 
KE752061.1     14649 ccaaaagctgatccgtAGGTGAGGC  Intron 7   CAGGgccgaga 
                     ttgcaaaagccgtaaa  <2-----[14699:14853]-2> cgtaaag 
                     ggcgcgccgccggggc                          cggggcg 


SPP00000081_2.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE---- 
                     EGAGDAAAWQAE +R MHA+NPKYVLRNYIA NAIEAAE GDFSE     
                     EGAGDAAAWQAERMRAMHASNPKYVLRNYIAHNAIEAAENGDFSEARAH 
KE752061.1     14876 ggggggggtcggcacgacgaacatgccatagcagaggggaggttggagc 
                     agcgacccgacagtgctacgacaattgaatcaactaccaagatcacgca 
                     ggcgccccggtgcgtcgcccccgcgggcccgccccgtcgcaccagaagc 


SPP00000081_2.0  616 -------                       VRRVLKLLETPYHCEAGAA 
                                                   VRRVLKLLE PYH +  A  
                     LSLLCPW                       VRRVLKLLEAPYHRDGEAP 
KE752061.1     15023 ctcctctGTCCCAC  Intron 8   CAGgccgcaccggctcaggggc 
                     tcttgcg<0-----[15044:15105]-0>tggttattaccaagagacc 
                     gcgctcg                       gagggggggtaccgcggcc 


SPP00000081_2.0  635 TDAEATEADGAD---GRQRSYSSKPPLWAAELCVT               
                        +  E +GA    G +RSYSS+PPLWAAELCVT               
                     EVPDVAEPEGAGGPAGGRRSYSSRPPLWAAELCVT               
KE752061.1     15163 ggcggggcgggggcgggccttaaaccctgggctga               
                     atcatcacagcggccggggcagggcctgccatgtc               
                     gcgtccgtgggccgtcgacccccgcgcggagcccc               


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>KE752061.1.pep
TAAGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQS
TVVRDVFYDGNPKQEPCAVVLRVAPTFLRFGSFEIFKPADESTGRAGPSVGRNDIRVQML
DYVVGTFYPEIQAAHAGDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIVG
LTIDYGPFGFLDRGDPDHVCNASDNAGRYTYSKQPEVCKWNLRKLAEALAPELPLALAAV
GAGXAVLAEEYDAEFRRHYLHKMRRKLGLVCAEREEDAALVARLLETMQLTGADFTNTFC
LLSSFPVGPEAPGLADILTALTAQCASLEELRLAFRPQMDPRQLSMMLTLAQSNPQLFTL
LGSQTSIAKELERVEQQSRLEQLSPAELLSTNKDHWATWLQEYRARLEKDREGAGDAAAW
QAERMRAMHASNPKYVLRNYIAHNAIEAAENGDFSEARAHLSLLCPWVRRVLKLLEAPYH
RDGEAPEVPDVAEPEGAGGPAGGRRSYSSRPPLWAAELCVT
//
>KE752061.1.[1:10459].sp
ACGGCCGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGGCCCACGCCCTTCTCC
AGACAGGCCGACGGCCGCAAGGTCCTGCGCTCCAGCATCCGGGAGTTCCTGTGCAGCGAG
GCCATGTTCCACCTGGGCATCCCCACCACGCGGGCGGGGGCCTGCGTCACGTCGCAGTCC
ACGGTGGTGCGTGACGTGTTCTACGACGGCAACCCCAAGCAGGAGCCGTGCGCGGTCGTG
CTGCGTGTGGCCCCCACCTTCCTCAGGTTCGGGTCCTTCGAGATCTTCAAGCCGGCGGAC
GAGAGCACGGGGCGCGCGGGCCCCAGCGTGGGGAGGAACGACATCCGCGTTCAGATGCTG
GACTACGTGGTCGGCACGTTCTACCCTGAGATCCAGGCCGCGCACGCCGGCGACAGCGTG
CAGAGGAACGCCGCCTTCTTCCGCGAGGTGACACGTCGCACAGCCCGGATGGTGGCCGAG
TGGCAGTGTGTCGGCTTCTGCCACGGCGTCCTCAACACGGACAACATGAGCATCGTGGGG
CTCACCATCGACTACGGGCCCTTCGGCTTCCTGGACAGGGGTGACCCCGACCACGTGTGC
AACGCCTCCGACAACGCTGGGCGCTACACGTACAGCAAGCAGCCCGAGGTGTGCAAGTGG
AACCTGCGGAAGCTGGCCGAGGCCCTGGCGCCCGAGCTGCCGCTGGCGCTGGCTGCCGTG
GGCGCTGGC
>KE752061.1.[10464:15267].sp
GCCGTCCTGGCCGAGGAGTACGACGCCGAGTTCCGCAGGCACTACCTGCACAAGATGCGC
AGGAAGCTGGGCCTCGTGTGCGCCGAGCGGGAGGAGGACGCCGCGCTGGTGGCCCGGCTG
CTGGAGACCATGCAGCTGACCGGCGCTGACTTCACCAACACCTTCTGCCTGCTGAGCTCC
TTCCCGGTGGGGCCGGAGGCACCGGGCCTGGCCGACATCTTGACCGCGCTGACCGCACAG
TGTGCCTCCCTGGAGGAGCTGAGACTCGCCTTCCGCCCCCAGATGGACCCCCGGCAGCTC
TCCATGATGCTGACGCTGGCGCAGTCCAACCCGCAGCTCTTCACGCTGCTCGGCTCGCAG
ACGAGCATCGCAAAGGAGCTGGAGCGTGTGGAGCAGCAGTCGCGGCTGGAGCAGCTGAGC
CCGGCGGAGCTGCTGAGCACGAACAAGGACCACTGGGCCACCTGGCTGCAGGAGTACAGG
GCCCGGCTGGAGAAGGACAGGGAGGGGGCCGGGGACGCCGCCGCCTGGCAGGCTGAGCGC
ATGCGTGCCATGCACGCCAGCAACCCCAAGTACGTGCTGCGGAACTACATCGCGCACAAC
GCCATCGAGGCTGCCGAGAACGGAGACTTCTCAGAGGCAAGAGCGCACCTGTCCCTGCTC
TGTCCCTGGGTGCGACGGGTGCTGAAGCTGCTGGAGGCTCCATACCACAGGGACGGGGAG
GCCCCCGAGGTCCCGGATGTCGCCGAGCCTGAGGGGGCGGGCGGCCCGGCTGGCGGGCGA
CGCTCCTACAGCAGCAGGCCCCCGCTCTGGGCGGCAGAGCTCTGCGTCACC
//
KE752061.1	GeneWise	match	1	10459	465.98	+	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	1	62	0.00	+	0	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	intron	63	7620	0.00	+	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	7621	7824	0.00	+	1	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	intron	7825	8985	0.00	+	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	8986	9166	0.00	+	1	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	intron	9167	9794	0.00	+	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	9795	9925	0.00	+	0	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	intron	9926	10308	0.00	+	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	10309	10459	0.00	+	1	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	match	10464	15267	392.68	+	.	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	cds	10464	10605	0.00	+	0	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	intron	10606	13465	0.00	+	.	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	cds	13466	13616	0.00	+	2	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	intron	13617	14512	0.00	+	.	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	cds	14513	14698	0.00	+	1	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	intron	14699	14853	0.00	+	.	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	cds	14854	15043	0.00	+	1	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	intron	15044	15105	0.00	+	.	KE752061.1-genewise-prediction-2
KE752061.1	GeneWise	cds	15106	15267	0.00	+	0	KE752061.1-genewise-prediction-2
//

genewise output
Score 24.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_2.0   65 PGPEGAPSAPRPVPGACFTR                              
                     PG +G P  PRPV  A F R                              
                     PGGQGQPDTPRPVSLALFRR                              
KE752061.1    -14114 cggcgccgacccgtcgttca                              
                     cggagacaccgctctcttgg                              
                     tgtgagtcctcacagtgcgg                              


//
>KE752061.1.pep
PGGQGQPDTPRPVSLALFRR
//
>KE752061.1.[14114:14053].sp
CCTGGGGGTCAGGGACAGCCTGACACCCCTCGCCCAGTCTCACTGGCTTTGTTCCGGAGG
//
KE752061.1	GeneWise	match	14114	14055	24.00	-	.	KE752061.1-genewise-prediction-1
KE752061.1	GeneWise	cds	14114	14055	0.00	-	0	KE752061.1-genewise-prediction-1
//
