
genewise output
Score 20.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0  193 AAASPSAVFATRHFQPFLP-PPGQEL                        
                     A  S    F   HF P LP PP QE+                        
                     AGVSSRLAFLHHHFLPGLPSPPSQEM                        
KE799186.1:subs13804 gggttacgtcccctccgcctcctcga                        
                     cgtccgtcttaaattcgtcccccaat                        
                     tcaccggccctctcctcgcttccgag                        


//
>KE799186.1:subseq(32418,19036).pep
AGVSSRLAFLHHHFLPGLPSPPSQEM
//
>KE799186.1:subseq(32418,19036).[13804:13881].sp
GCTGGCGTATCCTCCAGGCTGGCCTTCCTCCATCACCATTTCCTCCCTGGCCTGCCCTCT
CCTCCCTCCCAGGAAATG
//
KE799186.1:subseq(32418,19036)	GeneWise	match	13804	13881	20.98	+	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	13804	13881	0.00	+	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
//

genewise output
Score 952.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000079_2.0   59 ARQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLT        
                     ++QE ALK LGT+GLFLFSSLDTD DMYISPEEF+PI+EKLT        
                     SKQESALKALGTEGLFLFSSLDTDQDMYISPEEFRPISEKLT        
KE799186.1:sub-18409 tacgtgcagcgaggctcttttgagcgataacggtacatgaca        
                     caaacctactgcagttttcctacaaatatgcaatgctcaatc        
                     tgggagggcggaaccccctcgcgcgtgccctggcgcctggga        


SPP00000079_2.0  101                           SCSVTQTGVQWCSHSSLQ      
                                                C     G Q+C  S         
                               G:D[gac]        MCQYF-SGSQFCHESRQV      
KE799186.1:sub-18283 GGTACCAG  Intron 1   CAGACatctt agacttcgaacg      
                      <1-----[18282:17272]-1>  tgaat gggatgaaggat      
                                               gtgtc tctgcttacaga      


SPP00000079_2.0  120                           QLPWLNXSSCLSLLRSTPAASCE 
                                                L     SS L L+ STP AS E 
                               P:G[ggg]        PL-----SSDLCLVGSTPTASYE 
KE799186.1:sub-17218 GGTAAGTA  Intron 2   AAGGGcc     tagctcggtacagatg 
                      <1-----[17217:15170]-1>  ct     cgatgttgcccccgaa 
                                               cc     ctcgtcagatttcccg 


SPP00000079_2.0  144 EEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLG              
                     EEELPPDPSEETLTIEARFQPLLPE+MTKSKDGFLG              
                     EEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLG              
KE799186.1:sub-15113 gggcccgcaggacaaggctcccccgtaaaaaggtcg              
                     aaatccacgaactctacgtacttcactcagaagttg              
                     ggaactcccagaccaacacgtgcggtgcgcacgcag              


SPP00000079_2.0  180                        VSRLALSGLRNWTAAASPSAVFATRH 
                                            VSRLALSGLR+W  AASPSAVFA RH 
                                            VSRLALSGLRSWMTAASPSAVFAPRH 
KE799186.1:sub-15005 GTGAGTT  Intron 3   CAGgtccgctgccataaggtcaggtgccc 
                     <0-----[15005:12366]-0>tcgtctcgtgggtcccccgcttccga 
                                            cccgcgcccccggcacgatcgttccc 


SPP00000079_2.0  206 FQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKE     
                     F+PFLPP GQ ELGEPWWIIPSELS+FTGYLSNNRFYPPPPKGKE     
                     FRPFLPPRGQVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKE     
KE799186.1:sub-12287 tcctccccgcggcggcttaacagcagtagtctaacttccccagag     
                     tgcttccggatatgacggttcgatgttcgatcaagtaccccagaa     
                     cgccttggcgggacgcggccctggtcctctgccccccaagcgcgg     


SPP00000079_2.0  250                        VIIHRLLSMFHPRPFVKTRFAPQGAV 
                                            +IIH+LLSMFHPRPFVKTRFAPQGAV 
                                            IIIHKLLSMFHPRPFVKTRFAPQGAV 
KE799186.1:sub-12152 GTGAGGA  Intron 4   CAGaaacaccaatcccctgaactgccggg 
                     <0-----[12152:11951]-0>tttaattgttacgcttacgtccagct 
                                            ccccgcgcgccgaccggcctttagac 


SPP00000079_2.0  276 ACLTAISDFYYTVMF                          IHAEFQLS 
                     ACLTAISDFYYTVMF                          IHAEFQLS 
                     ACLTAISDFYYTVMF           R:R[cga]       IHAEFQLS 
KE799186.1:sub-11872 gtcagaagtttagatCGGTGAGTG  Intron 5   CAGAacggtcca 
                     cgtcctgataacttt  <2-----[11825:11324]-2> tacatatg 
                     ccgtccccccctggc                          cccgcgcc 


SPP00000079_2.0  300 EPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH             
                     EPPDFPFWFSP QFTGHIILSKDATHVRDFRLFVPNH             
                     EPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFVPNH             
KE799186.1:sub-11298 gccgtcttttcgctagcaactaggacgcgtcctgcac             
                     accatctgtccgatcgatttcaaccatgatgtttcaa             
                     ggcctccgcgtcgccccccccataccctccgtcgccc             


SPP00000079_2.0  337                           SLNVDMEWLYGASESSNMEVDIG 
                                               SLNVDMEWLYGASESSNMEVDIG 
                                R:R[agg]       SLNVDMEWLYGASESSNMEVDIG 
KE799186.1:sub-11187 AGGTGGGAG  Intron 6   CAGGtcaggagtctggagaaaagggag 
                       <2-----[11185: 9678]-2> ctatatagtagcgaggatatatg 
                                               tgtgcggggtgctgcccgagccc 


SPP00000079_2.0  361 YIPQ                       MELEATGPSVPSVILDEDGSMI 
                     YIPQ                       MELEATGPS+PSVILDEDG+MI 
                     YIPQ                       MELEATGPSIPSVILDEDGNMI 
KE799186.1:subs-9607 taccGTAAGAG  Intron 7   CAGagcggagctactgacggggaaa 
                     atca<0-----[9595 : 9470]-0>tataccgcctcctttaaagatt 
                     cacg                       ggggcaccaactgcgcgtccgc 


SPP00000079_2.0  387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
                     DS LPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
                     DSRLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
KE799186.1:subs-9403 gaccctggccctgtggaatccgcatggggcccgggatctaa         
                     aggtccgactatttaatagaaatggaaccggtatctactaa         
                     ccggcgggccgtgtgacggggggcgggtcgcgagcgcccgg         


SPP00000079_2.0  428                        VSYLPFTEAFDRAKAENKLVHSILLW 
                                            V+YLPFTEAFD+AKA+NKLVHSILLW 
                                            VTYLPFTEAFDQAKAKNKLVHSILLW 
KE799186.1:subs-9280 GTGAGGC  Intron 8   CAGgatcctaggtgcgagaaacgctacct 
                     <0-----[9280 : 8949]-0>tcatctcactaacacaaattactttg 
                                            cccgaccgcccacgcgcgggcgcggg 


SPP00000079_2.0  454 GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX          G:G[ggt]        SGRTLRETVLESSP 
KE799186.1:subs-8870 ggcggctttGGTGAGGG  Intron 9   CAGGTtgcaccgagcgatc 
                     gctaaacgg <1-----[8842 : 7780]-1>  cggctgacttagcc 
                     gcgccgcca                          agatcggtcgatgc 


SPP00000079_2.0  478 ILTLLNESFISTWSLVKELEELQ                       NNQ 
                     ILTLLNESFISTWSLVKELE+LQ                       +NQ 
                     ILTLLNESFISTWSLVKELEDLQ                       SNQ 
KE799186.1:subs-7735 acaccagataaattcgagcggccGTGAGTG  Intron 10  TAGaac 
                     ttcttaagttgcgcttaataata<0-----[7666 : 7585]-0>gaa 
                     ccccctgcctccgcagggggcgg                       ccg 


SPP00000079_2.0  504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV                   
                     EN SH+KLA LHLEKYSFPVEMMICLPNGTV                   
                     ENPSHKKLADLHLEKYSFPVEMMICLPNGTV                   
KE799186.1:subs-7575 gactcaacggcccgatatcggaaattcagag                   
                     aaccaaatcatataaagtctatttgtcagct                   
                     gcaccgggtcgcgggccccggggccgttctg                   


SPP00000079_2.0  535                        VHHINANYFLDITSVKPEEIESNLFS 
                                            VHHINANYFLDITS+KPE+IE+N+FS 
                                            VHHINANYFLDITSMKPEDIENNVFS 
KE799186.1:subs-7482 GTAGGAC  Intron 11  CAGgccaagatttgaataacggagaagta 
                     <0-----[7482 : 6472]-0>taatacaattatcctacaataaattg 
                                            cccccccccgccccggtgccgctccc 


SPP00000079_2.0  561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQ                     
                     FSSTFEDPSTATYMQFLKEGLRRGLPLLQ                     
                     FSSTFEDPSTATYMQFLKEGLRRGLPLLQ                     
KE799186.1:subs-6393 tttatggctagatactcaggcccgccccc                     
                     tccctaacccccatattaagtgggtctta                     
                     catctacgcgcccggcgggctatcgcccg                     


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>KE799186.1:subseq(32418,19036).pep
SKQESALKALGTEGLFLFSSLDTDQDMYISPEEFRPISEKLTDMCQYFSGSQFCHESRQV
GPLSSDLCLVGSTPTASYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLA
LSGLRSWMTAASPSAVFAPRHFRPFLPPRGQVELGEPWWIIPSELSVFTGYLSNNRFYPP
PPKGKEIIIHKLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPD
FPFWFSPGQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIP
QMELEATGPSIPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMY
PFKKVTYLPFTEAFDQAKAKNKLVHSILLWGALDDQSCXGSGRTLRETVLESSPILTLLN
ESFISTWSLVKELEDLQSNQENPSHKKLADLHLEKYSFPVEMMICLPNGTVVHHINANYF
LDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQ
//
>KE799186.1:subseq(32418,19036).[18409:6305].sp
TCTAAGCAGGAGTCAGCGCTGAAGGCCCTGGGGACAGAAGGCCTCTTCCTCTTCTCTTCC
TTGGACACGGACCAGGATATGTACATCAGCCCTGAGGAGTTCAGGCCCATCTCTGAGAAG
CTGACAGACATGTGTCAGTATTTCAGTGGCAGTCAGTTCTGTCATGAAAGCAGACAGGTA
GGGCCCCTCTCCAGTGACCTGTGTCTCGTAGGGTCAACTCCTACTGCCAGCTACGAGGAG
GAGGAACTACCCCCTGACCCCAGCGAAGAGACACTCACCATAGAAGCCCGATTCCAGCCT
CTGCTCCCGGAGTCTATGACCAAGAGCAAAGACGGGTTCCTAGGGGTCTCCCGCCTGGCC
CTGTCCGGCCTCCGCAGCTGGATGACCGCAGCCTCGCCAAGTGCCGTGTTTGCTCCCCGC
CACTTCCGGCCCTTCCTTCCTCCGCGGGGCCAGGTGGAGCTAGGCGAGCCCTGGTGGATC
ATCCCCAGTGAGCTGAGTGTCTTCACTGGCTATCTGTCCAACAACCGCTTCTACCCACCA
CCGCCCAAGGGCAAGGAGATCATCATCCACAAGCTCCTGAGCATGTTCCACCCGCGACCC
TTCGTGAAGACCCGCTTTGCTCCTCAAGGGGCAGTCGCCTGCCTGACTGCCATCAGCGAC
TTCTACTACACTGTGATGTTCCGAATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCCGAC
TTTCCCTTCTGGTTCTCGCCTGGCCAGTTCACCGGCCACATCATCCTCTCCAAAGATGCA
ACCCACGTCCGTGACTTCCGGCTTTTCGTGCCCAACCACAGGTCTCTGAATGTGGACATG
GAGTGGCTGTATGGGGCCAGTGAGAGCAGCAACATGGAAGTGGACATCGGCTACATACCC
CAGATGGAGCTGGAGGCCACAGGCCCCTCAATACCCTCTGTGATCCTGGACGAGGATGGC
AACATGATCGACAGCCGGCTGCCCTCGGGGGAGCCCCTCCAGTTTGTGTTTGAGGAAATC
AAGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCTGCCCGGCGCCTGGAAGTGGCCATGTAC
CCCTTCAAGAAGGTCACCTACCTGCCATTCACCGAGGCCTTCGACCAAGCCAAGGCCAAG
AACAAGCTGGTGCACTCGATCCTGCTGTGGGGGGCCCTGGACGACCAGTCCTGCTGAGGT
TCAGGGCGAACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCCATCCTCACCCTCCTCAAT
GAGAGCTTCATTAGCACCTGGTCCCTAGTGAAGGAGCTGGAGGACCTGCAGAGCAACCAG
GAGAACCCATCCCACAAGAAGCTGGCTGACCTGCACCTGGAGAAGTACAGCTTCCCCGTG
GAGATGATGATCTGCTTGCCTAATGGCACTGTGGTCCACCACATCAACGCCAACTACTTC
TTGGACATCACCTCCATGAAGCCTGAGGACATCGAGAACAATGTCTTCAGCTTCTCATCT
ACCTTTGAAGACCCGTCCACGGCCACCTACATGCAGTTCCTGAAGGAGGGCCTTCGACGT
GGCCTGCCCCTCCTCCAG
//
KE799186.1:subseq(32418,19036)	GeneWise	match	18409	6307	956.35	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	18409	18283	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	18282	17272	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	17271	17218	0.00	-	2	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	17217	15170	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	15169	15006	0.00	-	2	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	15005	12366	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	12365	12153	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	12152	11951	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	11950	11826	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	11825	11324	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	11323	11186	0.00	-	1	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	11185	9678	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	9677	9596	0.00	-	1	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	9595	9470	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	9469	9281	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	9280	8949	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	8948	8843	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	8842	7780	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	7779	7667	0.00	-	2	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	7666	7585	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	7584	7483	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	intron	7482	6472	0.00	-	.	KE799186.1:subseq(32418,19036)-genewise-prediction-1
KE799186.1:subseq(32418,19036)	GeneWise	cds	6471	6307	0.00	-	0	KE799186.1:subseq(32418,19036)-genewise-prediction-1
//
