
genewise output
Score 177.94 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000076_2.0    2 VYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL               
                     +++S GQVLDSRSQSPWRLSLITDFFWGIAEFVVL               
                     LFLSIGQVLDSRSQSPWRLSLITDFFWGIAEFVVL               
KE785780.1:subs13713 ttttagcgtgacactctatttaagtttgaggtggt               
                     tttctgattagggaccggtcttcattggtcatttt               
                     acgtaaatgctgtgcagaaagaatctgaatgcgtg               


SPP00000076_2.0   37                           FKTLLQQDVKKRRSYGNSSDSRY 
                                               FKTLLQQDVKKRR YG+SSDSRY 
                                F:F[ttt]       FKTLLQQDVKKRRGYGSSSDSRY 
KE785780.1:subs13818 TTGTAAGTA  Intron 1   CAGTtaaccccggaaaagtgattgtat 
                       <2-----[13820:15016]-2> tacttaaataagggaggccacga 
                                               catgagatgagaaccacattcat 


SPP00000076_2.0   61 DDGR                          PPGNPPRRMGRINHLRGPS 
                     DDGR                          PPGNPPRRMGRINHLRGP+ 
                     DDGR           G:G[ggg]       PPGNPPRRMGRINHLRGPN 
KE785780.1:subs15087 gggaGGGTATAGT  Intron 2   TAGGccgaccaaagaaacccgca 
                     aagg  <2-----[15101:15750]-2> ccgaccggtggtaatggca 
                     ttaa                          caactcaagtatttgtttt 


SPP00000076_2.0   85 PPPMAGG                                           
                     PPPMAGG                                           
                     PPPMAGG                                           
KE785780.1:subs15809 cccaggg                                           
                     ccctcgg                                           
                     ttagtta                                           


//
Making a F in phase 2 intron
Making a G in phase 2 intron
>KE785780.1:subseq(5924,19901).pep
LFLSIGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRGYGSSSDSRYD
DGRGPPGNPPRRMGRINHLRGPNPPPMAGG
//
>KE785780.1:subseq(5924,19901).[13713:15829].sp
TTATTCTTGTCTATAGGACAAGTTTTGGACAGTCGGAGTCAGTCCCCATGGAGATTATCA
TTGATAACAGATTTCTTTTGGGGAATAGCTGAGTTCGTGGTTTTGTTTTTCAAAACTCTG
CTACAGCAAGATGTGAAAAAGAGAAGAGGCTACGGAAGCTCATCTGATTCCAGATATGAT
GATGGAAGAGGGCCCCCAGGAAACCCTCCCAGAAGAATGGGTAGAATTAATCATCTGCGT
GGTCCTAATCCTCCTCCAATGGCTGGTGGA
//
KE785780.1:subseq(5924,19901)	GeneWise	match	13713	15829	177.94	+	.	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	cds	13713	13819	0.00	+	0	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	intron	13820	15016	0.00	+	.	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	cds	15017	15100	0.00	+	1	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	intron	15101	15750	0.00	+	.	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	cds	15751	15829	0.00	+	1	KE785780.1:subseq(5924,19901)-genewise-prediction-1
//

genewise output
Score 24.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000076_2.0   77 INHLRGPSPPP                                       
                     +NHL  PSPPP                                       
                     VNHLASPSPPP                                       
KE785780.1:sub-10750 gaccgtctccc                                       
                     taatccccccc                                       
                     actttttcgtg                                       


//
>KE785780.1:subseq(5924,19901).pep
VNHLASPSPPP
//
>KE785780.1:subseq(5924,19901).[10750:10716].sp
GTAAACCATCTTGCTTCTCCTTCCCCGCCTCCG
//
KE785780.1:subseq(5924,19901)	GeneWise	match	10750	10718	24.07	-	.	KE785780.1:subseq(5924,19901)-genewise-prediction-1
KE785780.1:subseq(5924,19901)	GeneWise	cds	10750	10718	0.00	-	0	KE785780.1:subseq(5924,19901)-genewise-prediction-1
//
