
genewise output
Score 774.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0   19 KYSAVDTNPLSLYVMHPFWNTIVK                       VF 
                     +YSAVDTNPLSLY+MHPFWNT+VK                       VF 
                     QYSAVDTNPLSLYIMHPFWNTVVK                       VF 
AWHC01202482.1  1224 ctagggaacctctaaccttaaggaGTAAGAT  Intron 1   TAGgt 
                     aagctacactctattactgactta<0-----[1296 : 1776]-0>tt 
                     gcttgtctactgttgcgtgctaag                       at 


SPP00000074_2.0   45 PTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS                
                     PTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS                
                     PTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS                
AWHC01202482.1  1783 catcgcacaattgtccggtattcagttgcgttgt                
                     ccgtccattctcgttttttattttcatacatacc                
                     ttggtataaattctagtacttatgactttcttta                


SPP00000074_2.0   79                           PGHKHVPDWVWIVVGILNFVAYT 
                                               PGHKHVPDWVWIVVGILNFVAYT 
                               A:A[gca]        PGHKHVPDWVWIVVGILNFVAYT 
AWHC01202482.1  1885 GGTAAGAT  Intron 2   CAGCAcgcacgcgtgtagggacatggta 
                      <1-----[1886 : 2889]-1>  cgaaatcagtgtttgttattcac 
                                               atcgtatcgtgtagcccctacct 


SPP00000074_2.0  103 L                          GVDGKQARRTNSSTPLGELFDH 
                     L                          GVDGKQARRTNSSTPLGELFDH 
                     L          D:D[gat]        GVDGKQARRTNSSTPLGELFDH 
AWHC01202482.1  2961 cGGTAAGAA  Intron 3   CAGATggggacgcaaataactggctgc 
                     t <1-----[2965 : 6457]-1>  gtagaacggcacgcctgattaa 
                     a                          tgtaaaccactccccaggttct 


SPP00000074_2.0  127 GLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKY 
                     GLDSWSCVYFVVTVYSIFGRGS+GVSVFVLYLLLWVVLFSFILSHWEKY 
                     GLDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKY 
AWHC01202482.1  6526 gcgatttgttggagttatgcgttggagtgctccctggttttactctgat 
                     gtaggcgtatttctacttgggccgtgttttatttgttttctttcagaaa 
                     cgttgactcttatgtcctgaagttcttttttcgagttgttccgccgagt 


SPP00000074_2.0  176 NTGILFLPWGYDISQV                       TISFVYIVTA 
                     NTG+LFLPWGYDISQV                       TISFVYIVTA 
                     NTGVLFLPWGYDISQV                       TISFVYIVTA 
AWHC01202482.1  6673 aaggctcctgtgaacgGTAAGTA  Intron 4   CAGaattgtagag 
                     acgttttcggaatgat<0-----[6721 : 7747]-0>ctcttattcc 
                     cagttcgagatctcgg                       atttccagtg 


SPP00000074_2.0  202 VVGVEAWYEPFLFNFLYRDLFTAMII                        
                     +VGVEAWYEPFLFNFLYRDLFTAMII                        
                     IVGVEAWYEPFLFNFLYRDLFTAMII          G:G[ggt]      
AWHC01202482.1  7778 agggggttgctctatttagctagaaaGGTAAGAA  Intron 5      
                     ttgtacgaactttattagattccttt <1-----[7857 :14778]   
                     tgatgcgtatcgttcatacactagtt                        


SPP00000074_2.0  228      CALCVTLPMSLLNFF                          SYK 
                          CA+CVTLPMSLLNFF                          SYK 
                          CAICVTLPMSLLNFF           R:R[aga]       SYK 
AWHC01202482.1 14776 TAGGTtgatgaccaattattAGGTATGTG  Intron 6   CAGAata 
                     -1>  gctgtctctgttatt  <2-----[14828:16170]-2> gaa 
                          taatgttagtaactt                          cta 


SPP00000074_2.0  248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
                     NNTLK NSVYEA+VP+FSPCLLFILSTAWIL SPSDILE+HPRVFYFMV 
                     NNTLKHNSVYEALVPIFSPCLLFILSTAWILQSPSDILEIHPRVFYFMV 
AWHC01202482.1 16181 aaatacatgtggcgcattcttctattagtacctctgatgaccagtttag 
                     aactaaactaacttcttccgtttttcccgttacccattatacgttattt 
                     tccgactactatgtccttatgactgtaagccgctattagattaacctgt 


SPP00000074_2.0  297 GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
AWHC01202482.1 16328 gagtgaaaGTAAGAT  Intron 7   AAGtccagtcaaaactcatat 
                     gcctcagc<0-----[16352:17546]-0>gatttgatggcggcctag 
                     aactccca                       tggtttagctcgtatgtg 


SPP00000074_2.0  323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVV+VVNLGVASY+ESILLYTLT  FT+AHIHYGVRV       
                     LLVPLFLVVMVVNLGVASYIESILLYTLTIVFTMAHIHYGVRV       
AWHC01202482.1 17601 tcgccttggaggatgggttagaacctataagtaagcactggcg       
                     tttcttttttttatgtccatagtttactctttctcataagtgt       
                     ggttccgtcggacaatctttgcttgtaaattctgcccttaaag       


SPP00000074_2.0  366                        VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLG+E 
                                            VKQLSSHFQIYPFSLRKPNSDXLGIE 
AWHC01202482.1 17730 GTGAGTA  Intron 8   CAGgaccaactcatctttaacatgtcgag 
                     <0-----[17730:19931]-0>taatggatatactctgacacagtgta 
                                            agagccttgtcccaggaacataaaaa 


SPP00000074_2.0  392 EKNIGL                                            
                     EKNIGL                                            
                     EKNIGL                                            
AWHC01202482.1 20010 gaaagc                                            
                     aaatgt                                            
                     agctca                                            


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
>AWHC01202482.1.pep
QYSAVDTNPLSLYIMHPFWNTVVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS
APGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVV
TVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYNTGVLFLPWGYDISQVTISFVYI
VTAIVGVEAWYEPFLFNFLYRDLFTAMIIGCAICVTLPMSLLNFFRSYKNNTLKHNSVYE
ALVPIFSPCLLFILSTAWILQSPSDILEIHPRVFYFMVGTAFANSTCQLIVCQMSSTRCP
TLNWLLVPLFLVVMVVNLGVASYIESILLYTLTIVFTMAHIHYGVRVVKQLSSHFQIYPF
SLRKPNSDXLGIEEKNIGL
//
>AWHC01202482.1.[1224:20027].sp
CAGTACAGTGCTGTGGATACCAATCCACTCTCTCTGTATATTATGCACCCGTTTTGGAAC
ACTGTAGTAAAGGTATTTCCTACTTGGCTGGCTCCAAATCTAATAACATTTTCTGGCTTT
CTACTGGTTGTATTCAATTTTTTACTTATGGCATACTTTGATCCTGACTTTTATGCTTCA
GCACCAGGTCACAAGCATGTACCTGACTGGGTTTGGATTGTAGTGGGCATCCTCAACTTT
GTAGCCTACACTCTAGATGGTGTGGATGGAAAACAAGCCCGCAGAACCAATTCCAGCACC
CCCTTAGGGGAGCTTTTTGACCATGGCCTGGATAGTTGGTCATGCGTTTACTTTGTTGTA
ACTGTGTATTCCATCTTTGGGCGAGGATCGTCTGGTGTCAGTGTTTTTGTTCTTTATCTC
CTGCTATGGGTTGTTTTGTTTTCTTTCATCCTGTCCCACTGGGAAAAGTATAACACAGGG
GTTCTTTTCCTGCCATGGGGATATGACATTAGCCAGGTGACAATTTCTTTTGTCTACATA
GTGACTGCGATTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATAT
AGAGACCTATTCACTGCAATGATTATTGGTTGTGCAATATGTGTGACTCTTCCAATGAGT
TTATTAAACTTTTTTAGAAGCTATAAAAATAACACCTTGAAACACAATTCAGTCTATGAA
GCTCTGGTTCCCATCTTTTCTCCATGTTTGCTATTCATTTTGTCTACAGCATGGATCCTC
CAGTCCCCTTCAGATATTTTAGAGATACATCCTAGAGTATTCTACTTTATGGTTGGAACA
GCCTTTGCCAACAGCACATGTCAGCTGATTGTTTGTCAAATGAGCAGTACCCGGTGTCCA
ACTTTGAATTGGTTGCTGGTTCCTCTCTTCTTGGTTGTCATGGTGGTAAACTTAGGAGTT
GCCTCTTATATTGAGAGCATTCTTCTGTATACATTAACAATTGTTTTCACTATGGCCCAC
ATCCATTATGGAGTACGAGTGGTAAAGCAACTGAGCAGCCATTTTCAGATTTACCCCTTC
TCATTGAGGAAACCAAACTCAGATTGACTAGGAATAGAAGAAAAGAACATTGGCCTA
//
AWHC01202482.1	GeneWise	match	1224	20027	774.35	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	1224	1295	0.00	+	0	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	1296	1776	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	1777	1885	0.00	+	0	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	1886	2889	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	2890	2964	0.00	+	2	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	2965	6457	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	6458	6720	0.00	+	2	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	6721	7747	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	7748	7856	0.00	+	0	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	7857	14778	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	14779	14827	0.00	+	2	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	14828	16170	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	16171	16351	0.00	+	1	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	16352	17546	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	17547	17729	0.00	+	0	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	intron	17730	19931	0.00	+	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	19932	20027	0.00	+	0	AWHC01202482.1-genewise-prediction-1
//

genewise output
Score 17.97 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0  168 ILSHWEKYNTGILFLPWGYD                              
                     ++S W++ N  +++ P G D                              
                     VISPWQEKNPCVILFPVGQD                              
AWHC01202482.1 -6708 gatctcgaactgactcggcg                              
                     ttccgaaaacgttttctgaa                              
                     cacaggagccttatcagagt                              


//
>AWHC01202482.1.pep
VISPWQEKNPCVILFPVGQD
//
>AWHC01202482.1.[6708:6647].sp
GTCATATCCCCATGGCAGGAAAAGAACCCCTGTGTTATACTTTTCCCAGTGGGACAGGAT
//
AWHC01202482.1	GeneWise	match	6708	6649	17.97	-	.	AWHC01202482.1-genewise-prediction-1
AWHC01202482.1	GeneWise	cds	6708	6649	0.00	-	0	AWHC01202482.1-genewise-prediction-1
//
