
genewise output
Score 179.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002303_2.0   25 AGGQKGVEVATVVIEH                          TSXRVYG 
                     AGGQKGVEVATVVIEH                          TSXRVYG 
                     AGGQKGVEVATVVIEH           C:C[tgc]       TSXRVYG 
KE809834.1:subs    1 gggcagggggaggagcTGGTGAGGG  Intron 1   TAGCaatcgtg 
                     cggaagtatcctttaa  <2-----[51   :  138]-2> cgggtag 
                     ttcggaggggcctcgt                          gtaaccg 


SPP00002303_2.0   49 RNAAALSQALRLEVPELPVEVNPAKPRRGSFEVTLLRPDGS         
                     RNAAALSQALRLE PELPVEVNPAKPRRGSFEVTLLRPDGS         
                     RNAAALSQALRLEAPELPVEVNPAKPRRGSFEVTLLRPDGS         
KE809834.1:subs  161 cagggcacgcccggcgccgggacgaccagatggaccccgga         
                     gaccctgactgtaccatctataccacggggtatcttgcagg         
                     cccgcgcgggcggcggtagagccggcggcccgggggcgccc         


SPP00002303_2.0   90                           AELWTGIKKGPPRKLKFPDPQEV 
                                               AELWTGIKKGPPRKLKFPDPQEV 
                               S:S[agt]        AELWTGIKKGPPRKLKFPDPQEV 
KE809834.1:subs  284 AGTGAGTG  Intron 2   CAGGTggctagaaagcccacatcgccgg 
                      <1-----[285  :  396]-1>  catgcgtaagccgatatcacaat 
                                               agcgtgtggacatacgctcgggg 


SPP00002303_2.0  114 VEELKKHLS                                         
                     VEELKK+LS                                         
                     VEELKKYLS                                         
KE809834.1:subs  468 gggcaatct                                         
                     taataaatc                                         
                     ggggggctg                                         


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>KE809834.1:subseq(0,30047).pep
AGGQKGVEVATVVIEHCTSXRVYGRNAAALSQALRLEAPELPVEVNPAKPRRGSFEVTLL
RPDGSSAELWTGIKKGPPRKLKFPDPQEVVEELKKYLS
//
>KE809834.1:subseq(0,30047).[1:494].sp
GCTGGTGGCCAGAAGGGAGTGGAGGTGGCGACCGTCGTTATCGAGCATTGCACGAGTTGA
CGAGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCGGAG
CTTCCAGTGGAAGTGAACCCCGCGAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTG
CGCCCGGACGGCAGCAGTGCAGAGCTCTGGACTGGGATTAAGAAGGGACCCCCACGTAAA
CTCAAGTTCCCTGACCCGCAGGAGGTGGTGGAGGAGCTGAAGAAGTACCTTTCG
//
KE809834.1:subseq(0,30047)	GeneWise	match	1	494	179.40	+	.	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	cds	1	50	0.00	+	0	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	intron	51	138	0.00	+	.	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	cds	139	284	0.00	+	1	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	intron	285	396	0.00	+	.	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	cds	397	494	0.00	+	2	KE809834.1:subseq(0,30047)-genewise-prediction-1
//

genewise output
Score 15.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002303_2.0   94 WTGIKKGPPRKLKFPDPQEVVEELKKHL                      
                     W  +  GPP +   P P  +++   +HL                      
                     WASVLPGPPLR-DSPGPSPMLDNDGRHL                      
KE809834.1:subs -102 tgtgccgcccc gtcgctcacgaggccc                      
                     gccttcgcctg accgcccttaaaggat                      
                     gcaattcctct ctatcaagctcctccc                      


//
>KE809834.1:subseq(0,30047).pep
WASVLPGPPLRDSPGPSPMLDNDGRHL
//
>KE809834.1:subseq(0,30047).[102:20].sp
TGGGCCTCAGTACTTCCTGGCCCCCCTCTCCGTGACTCTCCAGGTCCCTCACCAATGCTC
GATAACGACGGTCGCCACCTC
//
KE809834.1:subseq(0,30047)	GeneWise	match	102	22	15.46	-	.	KE809834.1:subseq(0,30047)-genewise-prediction-1
KE809834.1:subseq(0,30047)	GeneWise	cds	102	22	0.00	-	0	KE809834.1:subseq(0,30047)-genewise-prediction-1
//
