
genewise output
Score 14.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002295_2.0   92 IIDDPYMMG                                         
                     +++ PY++G                                         
                     VVESPYILG                                         
AWHC01215926.1  2089 gggtctatg                                         
                     ttaccattg                                         
                     ttatattga                                         


//
>AWHC01215926.1.pep
VVESPYILG
//
>AWHC01215926.1.[2089:2115].sp
GTTGTTGAATCTCCATATATTTTGGGA
//
AWHC01215926.1	GeneWise	match	2089	2115	14.85	+	.	AWHC01215926.1-genewise-prediction-1
AWHC01215926.1	GeneWise	cds	2089	2115	0.00	+	0	AWHC01215926.1-genewise-prediction-1
//

genewise output
Score 539.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002295_2.0    1 MSMRESLNLESYELDKIFHLTRFMELKGNGCKVPQDVLQELLESLQDNH 
                     MSM ESLNLESYELDKIF LTRFM+LKGNGCKVPQDVLQELLESLQDN+ 
                     MSMWESLNLESYELDKIFQLTRFMDLKGNGCKVPQDVLQELLESLQDNY 
AWHC01215926.1 -4037 atatgttacgatgtgaatccaatagtagagtagccggccgtcgttcgat 
                     tctgactatagaataattatcgttatagaggatcaattaattactaaaa 
                     gtgggcatgattagcgccgacacgtggctccagcatcggaggacaatcc 


SPP00002295_2.0   50 FQEDEQFWGAFMSRIGIRMDISVIPLKHHGLSSVQTMDYVYPIIDDPYM 
                     F EDEQFW AFMSR GIRMD SV PLKH GLS VQ  DYVYPIIDDPY  
                     FXEDEQFWKAFMSRTGIRMDTSVTPLKHRGLSFVQITDYVYPIIDDPYT 
AWHC01215926.1 -3890 ttgggcttagtataagaaagatgactaccgcttgcaagtgtcaaggcta 
                     taaaaatgacttcgcgtgtacctcctaaggtcttatcaatacttaacac 
                     caatggtgaatgagtctggtttcttggtttttttgcgtctttcttctcg 


SPP00002295_2.0   99 MGRIVCANV--LYTMGVGDGVTECDNMLKF-QIRNNMTNRERDKVMLLI 
                      GRIVCANV  L+TMG+GD VTEC+NMLK+  I N MTNRERDKVMLLI 
                     RGRIVCANVF!LHTMGMGDAVTECENMLKLLRISNKMTNRERDKVMLLI 
AWHC01215926.1 -3743 agaagtgagt1ccaagaggggagtgaacaccaaaaaaaaagagagacca 
                     gggttgcatt tactgtgactcagaattattgtgaatcagagaattttt 
                     gcgaatcttc ccaggggtacaatatgggctacttagccaagtaggcat 


SPP00002295_2.0  145 TQGFKDAAEEAGTSVVGGQTVLNPCIVLGGMATTVCQPNEFIVPDKAMP 
                     TQGF DAAEEA TSVVGG  VLNPCIVLGG+ATTV QPNEFIVPDKAMP 
                     TQGF!DAAEEAETSVVGGXKVLNPCIVLGGVATTVYQPNEFIVPDKAMP 
AWHC01215926.1 -3598 acgt5gggggggatggggtagtactagcggggaagtccagtagcgagac 
                     cagt accaacaccttgggattacgtttggtccctaacaatttcaactc 
                     agtt taaggaaatagtcaagacccttgaagtatccgttactgacaagt 


SPP00002295_2.0  194 EDVLVLTKPLEMQVAMAMHQCLDI-----------------LAEQEVMM 
                      DVLVLTKPLEMQVAMAMHQCLDI                  AE EVMM 
                     GDVLVLTKPLEMQVAMAMHQCLDIPEKWNEIKLVVTQVDVEFAEXEVMM 
AWHC01215926.1 -3449 gggcgcaaccgacggagacctcgacgatagaacggacggggtggtggaa 
                     gattttcactatatctctaagtatcaagaatatttcatatatcaaattt 
                     gtgcgcagcaggggcgcgcatgtttaagtatagggcaatggcagggggg 


SPP00002295_2.0  226 NMARFNRTDAGLIHIQAHTATNIPGLWNSGPPQNLAKQRRKKGSLVIHN 
                     NMAR+NR DAGL H++AHT  NI GLWNSG PQNLAKQ+RKK SLVIHN 
                     NMARLNRMDAGL!HVEAHTIANISGLWNSGSPQNLAKQQRKKESLVIHN 
AWHC01215926.1 -3302 aagacaaagggc5cgggcaagaatgctatgtccacgaccaaagttgaca 
                     atcgtagtacgt atacactcatcgtgacgccaatcaaagaaactttaa 
                     cgaggcagtaac caacctccccggtgttgaagcacaagagggcagtcc 


SPP00002295_2.0  275 LPVLAEMAVVSKACGNMFGLMHGDCPETSRDFLICLPC----        
                     LPVLAEMAVVSKACGNMFGLMHG CPETS DFLICLPC            
                     LPVLAEMAVVSKACGNMFGLMHGACPETSGDFLICLPCEQPL        
AWHC01215926.1 -3153 ccgcggagggaagtgaatgcacggtcgatggtcattctgccc        
                     tcttcatcttgacggattgttagcgcaccgatttgtcgaact        
                     cttgtggttgcgctacgtccgtgcctgaaactactactgaat        


SPP00002295_2.0  313                           EGNCTVKIIDKPQIIEVSPQVAT 
                                               +GN T +IIDKPQII+VSPQVAT 
                               R:E[gag]        KGNHTARIIDKPQIIKVSPQVAT 
AWHC01215926.1 -3027 GGTTCTGA  Intron 1   TAGAGagacagaaagaccaaagtccgga 
                      <1-----[3026 : 2959]-1>  agaaccgttaacattatccatcc 
                                               gcctacacacacgtcacaaggct 


SPP00002295_2.0  337 QNVNLTLGAIS                                       
                     QNVNLTLGA S                                       
                     QNVNLTLGATS                                       
AWHC01215926.1 -2887 cagacacggat                                       
                     aatatctgccc                                       
                     atgtcattctt                                       


//
Making a E in phase 1 intron
>AWHC01215926.1.pep
MSMWESLNLESYELDKIFQLTRFMDLKGNGCKVPQDVLQELLESLQDNYFXEDEQFWKAF
MSRTGIRMDTSVTPLKHRGLSFVQITDYVYPIIDDPYTRGRIVCANVFXLHTMGMGDAVT
ECENMLKLLRISNKMTNRERDKVMLLITQGFXDAAEEAETSVVGGXKVLNPCIVLGGVAT
TVYQPNEFIVPDKAMPGDVLVLTKPLEMQVAMAMHQCLDIPEKWNEIKLVVTQVDVEFAE
XEVMMNMARLNRMDAGLXHVEAHTIANISGLWNSGSPQNLAKQQRKKESLVIHNLPVLAE
MAVVSKACGNMFGLMHGACPETSGDFLICLPCEQPLEKGNHTARIIDKPQIIKVSPQVAT
QNVNLTLGATS
//
>AWHC01215926.1.[4037:3715].sp
ATGTCTATGTGGGAGTCCTTAAATCTGGAAAGTTATGAATTGGACAAGATCTTCCAGCTA
ACCAGATTCATGGATTTGAAGGGCAATGGCTGCAAAGTGCCCCAAGATGTCCTGCAGGAA
TTGCTGGAATCCTTACAAGATAACTACTTCTAAGAAGATGAGCAGTTTTGGAAAGCATTT
ATGTCAAGGACTGGCATTAGGATGGATACTTCTGTCACTCCTTTGAAGCATCGTGGTCTT
TCTTTTGTTCAGATCACGGATTACGTTTATCCTATCATTGATGACCCTTACACGAGGGGC
AGGATAGTATGTGCCAATGTT
>AWHC01215926.1.[3712:3585].sp
CTCCACACAATGGGGATGGGGGATGCAGTCACAGAATGTGAAAATATGCTGAAGCTCCTT
AGAATCAGTAATAAAATGACCAACAGAGAAAGGGATAAAGTGATGCTCCTAATTACACAG
GGTTTT
>AWHC01215926.1.[3581:3265].sp
GATGCAGCAGAGGAGGCAGAAACATCTGTAGTGGGTGGCTGAAAAGTGTTAAACCCCTGC
ATTGTTCTGGGAGGAGTGGCTACAACTGTCTACCAGCCTAATGAATTCATTGTGCCAGAC
AAAGCAATGCCTGGGGATGTGCTCGTGCTCACAAAGCCCCTAGAGATGCAGGTGGCCATG
GCCATGCACCAATGTCTGGATATTCCTGAAAAATGGAATGAAATTAAACTGGTGGTGACC
CAAGTAGATGTGGAGTTCGCAGAGTAGGAGGTGATGATGAACATGGCAAGGCTGAACAGA
ATGGATGCAGGACTC
>AWHC01215926.1.[3261:2853].sp
CACGTAGAAGCCCACACTATCGCCAACATCTCGGGGCTTTGGAATTCTGGGTCACCACAG
AACCTAGCCAAACAACAGAGAAAGAAGGAGTCCTTAGTGATTCACAACCTCCCTGTTCTG
GCTGAGATGGCTGTTGTGAGCAAGGCCTGTGGAAACATGTTTGGCCTCATGCATGGGGCC
TGCCCTGAGACATCAGGAGACTTTCTAATCTGTTTACCCTGTGAGCAACCACTTGAGAAG
GGCAACCATACAGCCAGAATCATAGACAAACCCCAGATTATCAAAGTCTCACCACAGGTG
GCCACTCAAAATGTGAATCTCACACTTGGTGCCACTTCT
//
AWHC01215926.1	GeneWise	match	4037	3717	199.29	-	.	AWHC01215926.1-genewise-prediction-1
AWHC01215926.1	GeneWise	cds	4037	3717	0.00	-	0	AWHC01215926.1-genewise-prediction-1
AWHC01215926.1	GeneWise	match	3712	3587	59.24	-	.	AWHC01215926.1-genewise-prediction-2
AWHC01215926.1	GeneWise	cds	3712	3587	0.00	-	0	AWHC01215926.1-genewise-prediction-2
AWHC01215926.1	GeneWise	match	3581	3267	118.60	-	.	AWHC01215926.1-genewise-prediction-3
AWHC01215926.1	GeneWise	cds	3581	3267	0.00	-	0	AWHC01215926.1-genewise-prediction-3
AWHC01215926.1	GeneWise	match	3261	2855	198.10	-	.	AWHC01215926.1-genewise-prediction-4
AWHC01215926.1	GeneWise	cds	3261	3027	0.00	-	0	AWHC01215926.1-genewise-prediction-4
AWHC01215926.1	GeneWise	intron	3026	2959	0.00	-	.	AWHC01215926.1-genewise-prediction-4
AWHC01215926.1	GeneWise	cds	2958	2855	0.00	-	2	AWHC01215926.1-genewise-prediction-4
//
