
genewise output
Score 16.89 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0  142 WNFW                                              
                     WNFW                                              
                     WNFW                                              
KE813456.1:subs 4713 tatt                                              
                     gatg                                              
                     gtcg                                              


//
>KE813456.1:subseq(201,18340).pep
WNFW
//
>KE813456.1:subseq(201,18340).[4713:4724].sp
TGGAATTTCTGG
//
KE813456.1:subseq(201,18340)	GeneWise	match	4713	4724	16.89	+	.	KE813456.1:subseq(201,18340)-genewise-prediction-1
KE813456.1:subseq(201,18340)	GeneWise	cds	4713	4724	0.00	+	0	KE813456.1:subseq(201,18340)-genewise-prediction-1
//

genewise output
Score 322.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0   47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD 
                     VSLVVNVASECGFTDQHYR LQQLQRDLGPHHFNVLAFPCNQFGQQEPD 
                     VSLVVNVASECGFTDQHYRDLQQLQRDLGPHHFNVLAFPCNQFGQQEPD 
KE813456.1:sub-16745 gtcggaggagtgtagcctcgccccccgcgccctagcgtctactgccgcg 
                     tctttatcgaggtcaaaagataatagatgcaatattctcgaatgaaaca 
                     gcgggtgccgtccacgccacaagaggcgacccctgtcccccgtcaggtc 


SPP00000040_2.0   96 SNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA            
                     SN+EIESFARRTYSVSFPMFSK+AVTGTGAHPAFKYL             
                     SNREIESFARRTYSVSFPMFSKVAVTGTGAHPAFKYLI            
KE813456.1:sub-16598 aaagagatgccatagttcataagggagaggccgtatca            
                     gagatagtcggcagtctcttgatctcgcgcacctaatt            
                     ccggtgctcctcctctccgtcgcacccttcctccgcgc            


SPP00000040_2.0  134                           TSGKEPTWNFWKYLVAPDGKVVG 
                                               TSGKEPTWNFWKYLVAPDGKVV  
                               Q:Q[caa]        TSGKEPTWNFWKYLVAPDGKVVE 
KE813456.1:sub-16484 CGTGAGTT  Intron 1   TAGAAatgagcatattatcggcggaggg 
                      <1-----[16483:15158]-1>  ccgaaccgatgaattccagatta 
                                               ttgggccgccggcagcataggag 


SPP00000040_2.0  158 AWDPTVSVEEVRPQITALVRKLILLKREDL                    
                     AWDPT+SVEE+RPQITALVRKLIL KREDL                    
                     AWDPTISVEEIRPQITALVRKLILKKREDL                    
KE813456.1:sub-15086 gtgcaatgggaaccaagcgaacacaacggt                    
                     cgacctctaatgcatccttgatttaagaat                    
                     tgcataggggcgcgcaatgggcagggaaca                    


//
Making a Q in phase 1 intron
>KE813456.1:subseq(201,18340).pep
VSLVVNVASECGFTDQHYRDLQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNREIESFARR
TYSVSFPMFSKVAVTGTGAHPAFKYLIQTSGKEPTWNFWKYLVAPDGKVVEAWDPTISVE
EIRPQITALVRKLILKKREDL
//
>KE813456.1:subseq(201,18340).[16745:14995].sp
GTGTCCCTGGTGGTGAATGTGGCCAGCGAGTGTGGCTTCACAGACCAGCACTACCGAGAC
CTACAACAGCTACAGCGGGACCTGGGACCCCACCACTTCAATGTGCTTGCCTTCCCCTGC
AACCAGTTTGGCCAACAGGAGCCTGACAGCAACAGGGAGATTGAGAGCTTTGCCCGCCGT
ACCTACAGTGTCTCTTTCCCCATGTTTAGCAAGGTCGCAGTCACCGGCACTGGTGCCCAC
CCTGCCTTCAAGTACCTGATCCAAACTTCTGGGAAGGAGCCCACCTGGAACTTCTGGAAG
TACCTAGTGGCCCCAGATGGAAAGGTGGTAGAGGCTTGGGACCCAACTATATCGGTGGAG
GAGATCAGGCCCCAGATCACAGCACTTGTGAGGAAGCTCATACTGAAGAAGCGAGAAGAC
TTA
//
KE813456.1:subseq(201,18340)	GeneWise	match	16745	14997	322.60	-	.	KE813456.1:subseq(201,18340)-genewise-prediction-1
KE813456.1:subseq(201,18340)	GeneWise	cds	16745	16484	0.00	-	0	KE813456.1:subseq(201,18340)-genewise-prediction-1
KE813456.1:subseq(201,18340)	GeneWise	intron	16483	15158	0.00	-	.	KE813456.1:subseq(201,18340)-genewise-prediction-1
KE813456.1:subseq(201,18340)	GeneWise	cds	15157	14997	0.00	-	2	KE813456.1:subseq(201,18340)-genewise-prediction-1
//
