
genewise output
Score 20.95 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0   78 VNYTQLVDLHARYAECGLR                               
                     VN+TQ +    R AEC LR                               
                     VNHTQHIGRAGRRAECSLR                               
AWHC01282061.1  2732 gacaccagcggccggtatc                               
                     taacaatggcgggcaggtg                               
                     acctgtcgtataatgttat                               


//
>AWHC01282061.1.pep
VNHTQHIGRAGRRAECSLR
//
>AWHC01282061.1.[2732:2788].sp
GTAAACCACACTCAGCATATCGGGCGTGCAGGTCGACGAGCTGAGTGTAGTTTACGT
//
AWHC01282061.1	GeneWise	match	2732	2788	20.95	+	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	2732	2788	0.00	+	0	AWHC01282061.1-genewise-prediction-1
//

genewise output
Score 303.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0   28 MCASRDDWRCARSMHEFSAKDIDGHMVNLDKY                  
                     +CASR+DWRCARSMHEFSAKDIDG MVNLDKY                  
                     QCASREDWRCARSMHEFSAKDIDGRMVNLDKY                  
AWHC01282061.1 -3027 ctgtcggtctgctacgttgagaggcagacgat                  
                     agccgaagggcgctaatccaataggttataaa                  
                     gtgctacgcttgcgtgcacgcccgcgtcgcgc                  


SPP00000026_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKT+VNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTDVNYTQL 
AWHC01282061.1 -2931 CGGTGGGTA  Intron 1   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[2929 : 2839]-2> gttgttcatccaggacataacat 
                                               ccgcccctgcgaacaccacctgc 


SPP00000026_2.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFG+Q                       E 
                     VDLHARYAECGLRILAFPCNQFGRQ                       E 
AWHC01282061.1 -2768 ggccgctggtgtcacgtctactgacGTGCGTG  Intron 2   CAGg 
                     tatacgacaggtgttctcgaatgga<0-----[2693 : 2567]-0>a 
                     ccgccattgttagcgcctccgcggg                       g 


SPP00000026_2.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PG+N EIKEFAAGYNVKFD+FSKICVNGDDAHPLWKWMKIQPKG+G+LG 
                     PGTNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKIQPKGRGMLG 
AWHC01282061.1 -2563 cgaaggaagtgggtagatgttaaatgaggggccctataaaccagcgacg 
                     cgcacataatccgaatatattgatgtagaacactgagtatacagggttg 
                     agtttgcagccccttcactgccgctccgttccgggaggacgcgggcgga 


SPP00000026_2.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
AWHC01282061.1 -2416 AAGTGAGTG  Intron 3   TAGTgaatataa                
                       <2-----[2414 : 2319]-2> ctagatca                
                                               tcggcccg                


SPP00000026_2.0  168                        FLIDKNGCVVKRYGPMEEPLV      
                                            FLIDKNGCVVKRYGPMEEPLV      
                                            FLIDKNGCVVKRYGPMEEPLV      
AWHC01282061.1 -2293 GTAGGTG  Intron 4   CAGtcagaagtggactgcaggccg      
                     <0-----[2293 : 2196]-0>tttaaaggttagagctaactt      
                                            cgtcgtccgggcctcgagcga      


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>AWHC01282061.1.pep
QCASREDWRCARSMHEFSAKDIDGRMVNLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLH
ARYAECGLRILAFPCNQFGRQEPGTNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWM
KIQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLV
//
>AWHC01282061.1.[3027:2131].sp
CAGTGTGCGTCCCGTGAAGACTGGCGCTGTGCTCGGTCCATGCATGAGTTCTCAGCCAAG
GACATCGACGGGCGCATGGTTAACCTGGACAAGTACCGGGGCTTCGTGTGCATCGTCACC
AATGTGGCCTCGCAATGAGGCAAAACCGACGTAAACTACACTCAGCTCGTCGACCTGCAC
GCCCGATATGCTGAGTGTGGTTTACGGATCCTGGCCTTCCCTTGCAACCAGTTCGGGAGG
CAGGAGCCAGGGACTAATGCTGAGATCAAAGAGTTCGCCGCCGGCTATAATGTCAAATTC
GATTTGTTCAGCAAGATCTGTGTCAACGGGGATGATGCCCACCCGCTGTGGAAATGGATG
AAAATCCAGCCCAAGGGGCGGGGCATGCTGGGAAATGCTATCAAGTGGAACTTCACCAAG
TTCCTGATTGACAAGAATGGCTGCGTGGTGAAGCGCTACGGTCCCATGGAAGAGCCCCTG
GTA
//
AWHC01282061.1	GeneWise	match	3027	2133	303.05	-	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	3027	2930	0.00	-	0	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	intron	2929	2839	0.00	-	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	2838	2694	0.00	-	1	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	intron	2693	2567	0.00	-	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	2566	2415	0.00	-	0	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	intron	2414	2319	0.00	-	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	2318	2294	0.00	-	1	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	intron	2293	2196	0.00	-	.	AWHC01282061.1-genewise-prediction-1
AWHC01282061.1	GeneWise	cds	2195	2133	0.00	-	0	AWHC01282061.1-genewise-prediction-1
//
