
genewise output
Score 15.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_2.0  113 SEILPTLKYVRP                                      
                     S +L T+KY++P                                      
                     SLLLYTVKYIKP                                      
KE810295.1:subs26339 tccctagataac                                      
                     ctttactaatac                                      
                     tcctttaattat                                      


//
>KE810295.1:subseq(0,30140).pep
SLLLYTVKYIKP
//
>KE810295.1:subseq(0,30140).[26339:26374].sp
TCTCTCCTCCTTTATACTGTAAAATATATTAAACCT
//
KE810295.1:subseq(0,30140)	GeneWise	match	26339	26374	15.65	+	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	26339	26374	0.00	+	0	KE810295.1:subseq(0,30140)-genewise-prediction-1
//

genewise output
Score 417.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_2.0    1 MARLLQASCLLSLLLAGFVSQSRGQEKSK                     
                     MA LL+ASCLLSLLLAGFV  SRGQ KSK                     
                     MAWLLRASCLLSLLLAGFVPLSRGQ-KSK                     
KE810295.1:subs-7949 agtcccgttcctcccggtgccacgc ataGTGAGTG  Intron 1    
                     tcgttgccgttctttcgttctggga aca<0-----[7865 : 3180] 
                     gcggcgacctctgcgccccgacggg ggg                     


SPP00000021_2.0   30    MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                        +DCH G+SGTIY+YGALTIDG+EYIPFKQYAGKY+LFVNVA+YXGL 
                        VDCHAGMSGTIYDYGALTIDGQEYIPFKQYAGKYILFVNVATYXGL 
KE810295.1:subs-3182 CAGggtcggaagaatgtggcaaggcgtactactggatactgaggattgc 
                     -0>tagacgtggctaaagctctagaaatctaaacgaattttatccaggt 
                        gccttcgtccctccacccctggaccccggttcaccctccgcccacg 


SPP00000021_2.0   76 TGQYI                          LNALQEELAPFGLVILGF 
                     TGQYI                          LNALQEELAPFGLV+LGF 
                     TGQYI          E:E[gaa]        LNALQEELAPFGLVVLGF 
KE810295.1:subs-3041 agctaGGTAAGAG  Intron 2   CAGAAcagccggcgctgcggcgt 
                     cgaat <1-----[3025 : 1849]-1>  tactaaatcctgttttgt 
                     acgct                          gtaagagtaattgctgcc 


SPP00000021_2.0  100 PCNQFGKQEPGENSEILPTL                          YVR 
                     P NQFGKQEPG+NSEILP L                          YVR 
                     PSNQFGKQEPGDNSEILPGL           K:K[aag]       YVR 
KE810295.1:subs-1792 ctactgacgcggatgaccgcAAGTGAGTG  Intron 3   CAGGtga 
                     ccaatgaaacgaacattcgt  <2-----[1730 : 1297]-2> atg 
                     cccacaaggaaccggcatcc                          tga 


SPP00000021_2.0  124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
KE810295.1:subs-1286 cgggtgcatcctgagggaggagcattatca                    
                     cgggttcatattaagatagaaaaatactta                    
                     atgttcttcactgaatgcggagggccacgg                    


SPP00000021_2.0  154                        NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSC PTSELLG+ + LFWEPM+ HDI 
                                            NSCLPTSELLGSPNSLFWEPMRNHDI 
KE810295.1:subs-1196 GTGAGTG  Intron 4   TAGattccatgccgtcaacttgcaaacga 
                     <0-----[1196 :  793]-0>acgtcccattgccagttgactgaaat 
                                            cttcccggcgcatccccgacggctcc 


SPP00000021_2.0  180 RWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK   
                     RWNFEKFLVGPDGIPIMRWHHR TVSNVKMDIL+YMRRQAALGV+ K   
                     RWNFEKFLVGPDGIPIMRWHHRITVSNVKMDILAYMRRQAALGVRGK   
KE810295.1:subs -714 ctatgatcggcggacaactcccaagaagaagacgtaaccggcggaga   
                     ggataatttgcagtcttggaagtctgatatattcatggacctgtgga   
                     cgctggcggaaccaccgcgccgcgccccggccgccggggacggcggg   


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KE810295.1:subseq(0,30140).pep
MAWLLRASCLLSLLLAGFVPLSRGQKSKVDCHAGMSGTIYDYGALTIDGQEYIPFKQYAG
KYILFVNVATYXGLTGQYIELNALQEELAPFGLVVLGFPSNQFGKQEPGDNSEILPGLKY
VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCLPTSELLGSPNSLFWEPMRNHDIRW
NFEKFLVGPDGIPIMRWHHRITVSNVKMDILAYMRRQAALGVRGK
//
>KE810295.1:subseq(0,30140).[7949:572].sp
ATGGCCTGGCTGCTCCGGGCATCCTGCCTTCTCTCTCTGCTCCTGGCCGGCTTCGTCCCG
CTAAGCCGGGGGCAGAAGTCGAAGGTGGACTGCCATGCTGGCATGAGTGGCACCATCTAT
GACTACGGAGCCCTCACCATCGATGGGCAGGAATACATCCCCTTCAAGCAGTATGCTGGC
AAATACATCCTCTTTGTCAACGTGGCCACCTACTGAGGCCTGACAGGCCAGTACATTGAA
CTGAATGCACTACAGGAAGAGCTTGCACCATTTGGTCTGGTCGTTCTGGGCTTCCCCTCC
AACCAATTCGGAAAACAGGAGCCAGGAGACAACTCGGAGATCCTACCTGGCCTCAAGTAT
GTGAGACCAGGTGGGGGTTTTGTCCCTAATTTCCAACTCTTTGAGAAAGGAGATGTGAAC
GGGGAGAAAGAGCAGAAGTTCTACACATTCCTGAAGAACTCTTGTCTCCCCACCTCGGAG
CTCCTGGGCTCACCTAACAGCCTCTTCTGGGAACCCATGAGGAACCATGACATCCGCTGG
AACTTTGAGAAGTTCCTGGTGGGACCAGACGGCATACCCATCATGCGCTGGCACCACCGG
ATCACGGTCAGCAACGTCAAGATGGACATCCTGGCCTACATGAGGCGGCAGGCAGCCCTG
GGGGTCAGGGGGAAG
//
KE810295.1:subseq(0,30140)	GeneWise	match	7949	574	417.87	-	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	7949	7866	0.00	-	0	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	intron	7865	3180	0.00	-	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	3179	3026	0.00	-	0	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	intron	3025	1849	0.00	-	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	1848	1731	0.00	-	2	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	intron	1730	1297	0.00	-	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	1296	1197	0.00	-	1	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	intron	1196	793	0.00	-	.	KE810295.1:subseq(0,30140)-genewise-prediction-1
KE810295.1:subseq(0,30140)	GeneWise	cds	792	574	0.00	-	0	KE810295.1:subseq(0,30140)-genewise-prediction-1
//
