
genewise output
Score 21.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002283_2.0   61 FSTQYFWF                                          
                     FSTQY+W+                                          
                     FSTQYYWY                                          
KE815153.1     29964 ttactttt                                          
                     tccaaaga                                          
                     ctagttgc                                          


//
>KE815153.1.pep
FSTQYYWY
//
>KE815153.1.[29964:29987].sp
TTCTCTACACAGTATTATTGGTAC
//
KE815153.1	GeneWise	match	29964	29987	21.63	+	.	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	cds	29964	29987	0.00	+	0	KE815153.1-genewise-prediction-1
//

genewise output
Score 477.39 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002283_2.0    1 MELPWPGRWLKRLWVLLQVALHVAVGKVQLTLFPRRVKQNIVAMNRKNP 
                     MELPWP RWLKRLWVLLQVA+HVAVGKVQLTLFPRRVKQNIVAMNRKNP 
                     MELPWPRRWLKRLWVLLQVAVHVAVGKVQLTLFPRRVKQNIVAMNRKNP 
KE815153.1    -22549 agcctcactcaactgctcgggcggggagccactcaagacaaggaaaaac 
                     tatcgcgggtagtgtttatctatctgatatcttcggtaaattctagaac 
                     gggcgaagggggcgacgggcatgtacacagcgtcgacggccgcgcggct 


SPP00002283_2.0   50 HFSFDNWLPTLFSTQYFWFVLKVRWQQLEDTTKEGGLAPNCPVVCLSGQ 
                     HFSFDNWLP+LFSTQYFWFVLKVRWQQLEDTTKEGGLAPNCPVV LSGQ 
                     HFSFDNWLPSLFSTQYFWFVLKVRWQQLEDTTKEGGLAPNCPVVHLSGQ 
KE815153.1    -22402 ctttgatccactaacttttgcagctcccggaaagggcgcatcggcctgc 
                     atctaagtcgttgcaatgtttatggaataaccaaggtccagcttatcga 
                     ttctccgcacccccgtcgccggctggaggcatgagtgcacctgcccaag 


SPP00002283_2.0   99 RCNIWDFMQ                          KRPLVLNFGSCTXP 
                     +CNIWDFM+                           RPLVLNFGSCTXP 
                     KCNIWDFMK          G:G[ggc]        NRPLVLNFGSCTXP 
KE815153.1    -22255 ataatgtaaGGTCAGGA  Intron 1   CAGGCaactgcatgatatc 
                     agatgatta <1-----[22227:14770]-1>  agctttatgggcgc 
                     gcctgccga                          caagggttattcat 


SPP00002283_2.0  123 SFLLKFDQFKKLIEDFSSIADFLVIYIEEAHASGTERFPASTSSCPLFS 
                     SFLLKFDQFKKLIEDFSSIADFLVIYIEEAHASGTERFPA TS C LFS 
                     SFLLKFDQFKKLIEDFSSIADFLVIYIEEAHASGTERFPACTSLCSLFS 
KE815153.1    -14725 ttctatgctaacaggtataggtcgatagggcgtgagatcgtattttctt 
                     ctttataataattaatgctcattttataacaccgcagtccgcctgcttc 
                     attgatcacgattacttcaatttctctaaataataaactctctactctt 


SPP00002283_2.0  172 LKXXXQAA                          RMLLDRSPPVPVVVD 
                     L    +                             MLLDRSP  PVVVD 
                     LSPFLKVG          -:A[gcc]        YMLLDRSPQCPVVVD 
KE815153.1    -14578 ctctcaggGGTGGGGA  Intron 2   CAGCCtaccgaacctcgggg 
                     tccttatg <1-----[14553: 9313]-1>  atttaggcagcttta 
                     ccttcatg                          tggacaccgctgggc 


SPP00002283_2.0  195 TMKNQSSHLYAALHERLYVLQEGRILYK                      
                     TMKNQSSHLYAAL ERLYVLQEGRILYK                      
                     TMKNQSSHLYAALPERLYVLQEGRILYK                      
KE815153.1     -9265 aaaacaacctggccgactgccggaactaGTAGTAA  Intron 3     
                     ctaaaggatacctcagtattaaggttaa<0-----[9181 : 7312]  
                     aggcgcccccgagtggctgcggcgcccg                      


SPP00002283_2.0  223    GKPGPWNYHPEEVHAVLEKLHS                         
                        GKPGPWNYHPEEV AVLEKLH+                         
                        GKPGPWNYHPEEVRAVLEKLHN                         
KE815153.1     -7314 CAGgacgctatccgggcggcgacca                         
                     -0>gacgcgaaacaatgcttaataa                         
                        tatctgcttagattttgagcct                         


//
Making a G in phase 1 intron
Making a A in phase 1 intron
>KE815153.1.pep
MELPWPRRWLKRLWVLLQVAVHVAVGKVQLTLFPRRVKQNIVAMNRKNPHFSFDNWLPSL
FSTQYFWFVLKVRWQQLEDTTKEGGLAPNCPVVHLSGQKCNIWDFMKGNRPLVLNFGSCT
XPSFLLKFDQFKKLIEDFSSIADFLVIYIEEAHASGTERFPACTSLCSLFSLSPFLKVGA
YMLLDRSPQCPVVVDTMKNQSSHLYAALPERLYVLQEGRILYKGKPGPWNYHPEEVRAVL
EKLHN
//
>KE815153.1.[22549:7244].sp
ATGGAGCTGCCCTGGCCAAGACGGTGGCTGAAGAGGCTCTGGGTACTCTTGCAGGTGGCC
GTACATGTGGCTGTAGGCAAAGTCCAACTGACCCTGTTTCCCAGGAGAGTCAAGCAGAAC
ATCGTGGCCATGAACAGGAAGAACCCTCATTTTTCCTTTGACAACTGGCTCCCAAGCCTC
TTCAGCACCCAGTATTTCTGGTTCGTCCTGAAGGTCCGTTGGCAGCAACTGGAGGACACA
ACTAAGGAAGGGGGTCTGGCCCCAAACTGCCCTGTGGTCCACCTCTCAGGACAGAAGTGC
AACATTTGGGACTTCATGAAAGGCAACAGACCATTGGTGCTGAATTTTGGAAGTTGTACC
TGACCTTCATTTCTTTTGAAATTTGACCAATTCAAGAAACTTATTGAAGACTTTAGTTCC
ATAGCAGATTTTCTTGTCATTTACATTGAAGAAGCACATGCATCAGGTACAGAAAGATTC
CCTGCCTGTACCTCTTTATGCTCTCTCTTTTCTCTCTCCCCTTTTCTCAAAGTTGGGGCC
TATATGCTGCTAGACAGAAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGAAGAACCAG
AGCAGCCACCTCTACGCGGCACTGCCTGAGAGGCTCTATGTGCTCCAGGAGGGCAGGATC
CTCTACAAGGGTAAACCTGGCCCTTGGAACTATCATCCAGAGGAAGTTCGTGCTGTTCTG
GAAAAGCTCCACAAT
//
KE815153.1	GeneWise	match	22549	7246	477.39	-	.	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	cds	22549	22228	0.00	-	0	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	intron	22227	14770	0.00	-	.	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	cds	14769	14554	0.00	-	2	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	intron	14553	9313	0.00	-	.	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	cds	9312	9182	0.00	-	2	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	intron	9181	7312	0.00	-	.	KE815153.1-genewise-prediction-1
KE815153.1	GeneWise	cds	7311	7246	0.00	-	0	KE815153.1-genewise-prediction-1
//
