Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t SelW.1.subseq.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: SelW
        Target: KI537293.1:subseq(4065820,200074) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold123, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 389
   Query range: 0 -> 87
  Target range: 98074 -> 100258

      1 : MetAlaValAlaValArgValValTyr{Cy}  >>>> Target Intron 1 >>>> :     10
          |||!.!||| !!|||||||||||||||{||}           1512 bp         
          MetGlyValProValArgValValTyr{Cy}++                         
  98075 : ATGGGTGTTCCCGTCCGAGTCGTCTAT{TG}gt......................... :  98106

     11 :   {s}GlyAlaUnkGlyTyrLysSerLys  >>>> Target Intron 2 >>>>   :     19
            {|}||||||   |||||||||||||||            105 bp           
          ++{s}GlyAla***GlyTyrLysSerLys++                         ++
  98107 : ag{T}GGCGCTTGAGGCTACAAGTCCAAGgt.........................ag :  99744

     20 : TyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIle  >> :     37
          ||||||||||||||||||||||||||||||||||||||||||!.!|||||||||    
          TyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyHisLeuAspIle++  
  99745 : TATCTTCAGCTTAAGAAGAAGTTAGAAGATGAGTTCCCTGGACACCTGGACATCgt.. :  99802

     38 : >> Target Intron 3 >>>>  CysGlyGluGlyThrProGlnValThrGlyPhe :     47
                  200 bp           |||||||||||||||||||||||||||||||||
                                 ++CysGlyGluGlyThrProGlnValThrGlyPhe
  99803 : .......................agtgcgGCGAGGGGACGCCCCAGGTCACCGGTTTC : 100030

     48 : PheGluValLeuValAlaGlyLysLeuValHisSerLysLys  >>>> Target In :     62
          ||||||||||||||||||||||||||||||||||||||||||            106 
          PheGluValLeuValAlaGlyLysLeuValHisSerLysLys++              
 100031 : TTTGAAGTGTTGGTAGCGGGGAAGTTGGTTCACTCCAAGAAGgt.............. : 100077

     63 : tron 4 >>>>  GlyGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeu :     76
          bp           |||||||||||||||||||||||||||||||||||||||||||||
                     ++GlyGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeu
 100078 : ...........agggAGGTGATGGCTATGTGGACACGGAGAGCAAGTTTCTGAAGCTG : 100223

     77 : ValAlaAlaIleLysAlaAlaLeuAlaGlnAla :     87
          ||||||||||||||||||!.!||||||||||||
          ValAlaAlaIleLysAlaValLeuAlaGlnAla
 100224 : GTGGCCGCCATCAAAGCCGTTTTGGCTCAGGCC : 100258

vulgar: SelW 0 87 . KI537293.1:subseq(4065820,200074) 98074 100258 + 389 M 9 27 S 0 2 5 0 2 I 0 1508 3 0 2 S 1 1 M 8 24 5 0 2 I 0 101 3 0 2 M 18 54 5 0 2 I 0 196 3 0 2 M 25 75 5 0 2 I 0 102 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	gene	98075	100258	389	+	.	gene_id 1 ; sequence SelW ; gene_orientation +
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	cds	98075	98103	.	+	.	
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	exon	98075	98103	.	+	.	insertions 0 ; deletions 0
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice5	98104	98105	.	+	.	intron_id 1 ; splice_site "GT"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	intron	98104	99615	.	+	.	intron_id 1
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice3	99614	99615	.	+	.	intron_id 0 ; splice_site "AG"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	cds	99616	99640	.	+	.	
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	exon	99616	99640	.	+	.	insertions 0 ; deletions 0
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice5	99641	99642	.	+	.	intron_id 2 ; splice_site "GT"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	intron	99641	99745	.	+	.	intron_id 2
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice3	99744	99745	.	+	.	intron_id 1 ; splice_site "AG"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	cds	99746	99799	.	+	.	
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	exon	99746	99799	.	+	.	insertions 0 ; deletions 0
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice5	99800	99801	.	+	.	intron_id 3 ; splice_site "GT"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	intron	99800	99999	.	+	.	intron_id 3
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice3	99998	99999	.	+	.	intron_id 2 ; splice_site "ag"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	cds	100000	100074	.	+	.	
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	exon	100000	100074	.	+	.	insertions 0 ; deletions 0
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice5	100075	100076	.	+	.	intron_id 4 ; splice_site "GT"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	intron	100075	100180	.	+	.	intron_id 4
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	splice3	100179	100180	.	+	.	intron_id 3 ; splice_site "ag"
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	cds	100181	100258	.	+	.	
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	exon	100181	100258	.	+	.	insertions 0 ; deletions 0
KI537293.1:subseq(4065820,200074)	exonerate:protein2genome:local	similarity	98075	100258	389	+	.	alignment_id 1 ; Query SelW ; Align 98075 1 27 ; Align 99617 11 24 ; Align 99746 19 54 ; Align 100000 37 75 ; Align 100181 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
