------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KI537994.1:subseq_4481670,201286_ Strand = - Positions = 99434 - 99358
 Found by:  Infernal (score=31.12) Covels (score=23.53)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -16.81

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCCCUCUAAACCCCUUUAAGGACUGGGAGAGGCAGAGCAAGCC-C-CAGAGCCCAG
                         ****            ^^^                       ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KI537994.1:subseq_4481670,201286_ Strand = - Positions = 152230 - 152159
 Found by:  Infernal (score=13.73) Covels (score=8.21)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -6.01

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..([{({(((--....([[((((((([{(...................)}])))))))]])..--.--)))})}])..
 target  CUCACGACCA--CCUGUGAAGUUCUUAUCCCAAACCUCACUUGUCACAGUGGGGAACUGAGGC--A--UGGACAGGUG
                         ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = KI537994.1:subseq_4481670,201286_ Strand = - Positions = 161879 - 161805
 Found by:  Infernal (score=10.08)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.06

         ..(((((((........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ....((((((.......([[({(((((((((------............)))))))))})]])......-..))))))....
 target  UCUCUUGCUGCUUCUUUUGAAUGAACUGACA------ACGUCCAGCACAUGUCAGUUUCUGAGGGUCAU-CACGGCAAAUAA
                          ****                                      ****                   

