_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-81
 Query name: gi|262050622|ref|NP_001159951.1| glutathione peroxidase 1 [Equus caballus]
 Query range: 17-201  (total 201)

 Target: /data/www-rg/seblastian_results/205229791/tempfiles/temptarget.fasta
 Chromosome: KK950679.1:subseq_320034,2818_ Strand: -
 Positions:
 -Exon 1  1633         1830
 -Exon 2  1000         1356

 Redox box: no

Query   FSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> ENAKNEEILNSLKYVRPG
        / |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   276bp    > ||||||||||||||||||
Target  WPARPLAGGEPLSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                ENAKNEEILNSLKYVRPG
        tcgcccggggctacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                gagaaggacatcatgccg
        gccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                aacaaaattactaatgcg
        gtgcggccggcgcgccgtcgggctgtaggcacagcgcccggcggggctgcccgcgcccgccgcgtg                gccgcagcgtccgccatc
                                      *                                                                     

Query   GGFEPNFTLFEKCEVNGAQAHPLFAFLREALPAPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALLTQGPSC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GGFEPNFTLFEKCEVNGAQAHPLFAFLREALPAPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALLTQGPSC
        ggtgcatactgatggaggcgccctgtccggccgcagggagcaagcataattcgtcagggtatgatcggcgggcgcatacctcaagagcgaggccacgcat
        ggtacatcttaagatagcacacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtcctatacatacttcagcgg
        cgcgcccactggcggttgggcgccccgggtgtcctccctgcgcctgcccgtagccctccgccggtggcgctgtgcgcccctaccttgcccacggcggcct
                                                                                                            

Query   A
        |
Target  A
        g
        c
        c
         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 47 ; UGA-SECIS: 509

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KK950679.1:subseq_320034,2818_ Strand = - Positions = 952 - 879
 Found by:  Infernal (score=38.11) Covels (score=27.08) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 1, 0
 Free Energy = -26.04

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..((((((((......{[[{((((((.((((......-..-----...))))))))))}]]}......-..))))))))..
 target  CUGGGGAUUUCAUCCAUGAUGGCGUUUCCUCUAAACA-UG-----CAUGAGGAACGCCUGAUGUUAAG-GAGAAUCCCCCG
                         ****            ^^^                       ****