Protein prediction
Predicted by: exonerate Blastx evalue: 2e-64
Query protein: gi|172045827|sp|Q91XR9.3|GPX42_MOUSE RecName: Full=Phospholipid hydroperoxide glutathione peroxidase, nuclear; AltName: Full=Glutathione peroxidase 4; Short=GPx-4; Short=GSHPx-4 [Mus musculus] >gi|14971095|gb|AAK74112.1|AF274027_1 phospholipid hydroperoxide glutathione peroxidase [Mus musculus]
Positions on query: 1-253 Query length: 253

Target name: KL201457.1:subseq_3495700,30212_
Positions on target: 15640-15888,15309-15403,15066-15210,14819-14970,13881-13905,13739-13798,13633-13662 Strand: -


  Query   MGRAAARKRGRCRQRGGSPRGRRRRGPGRQSPRKRPGPRR-RKARARRRRRARPRRMEPIPEPFNPGPLL
          ||| |/   |||| ||  | |||||   |||||||  ||| /|  || |/|  ||/||| |    |||  
  Target  MGREASGSPGRCRPRGRCPGGRRRRRLRRQSPRKRRSPRRKKKGHARGRKRPPPRQMEPAPS--TPGPPR
          agcggtgacgctaccgctcggcaccaccccaccaccacaaaaagcgcgcaacccccagcgct--acgccc
          tggaccggcggggcggggcgggggggtggagcgagggcggaaagacgggagcccgatacccc--ccgccg
          gccgcgcctgccaggcgttaccgctacacgtacgtccaagggactgagcggaatggggcgcc--ctgtcg
                                                                                
  
  Query   QEPPQYCNSSEFLGL <---Intron---> CASRDDWRCARSMHEFSAKDIDGHMVCLDKYR <---In
          //|||    /| ||| <   236bp    > |||||||||||||||||||||||||/|||||/ <    9
  Target  RDPPQCSTCAELLGL                CASRDDWRCARSMHEFSAKDIDGHMICLDKYK       
          cgccctaatggccgt                tgtcggtctgctacgttgagaggcaatcgata       
          gaccaggcgcattgt                gccgaagggcgctaatccaatagattgtaaaa       
          gctaacccccgcgcg                cattttgctgccgtacacgctcgcgtcatac        
                                                                                
  
  Query   tron---> GFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ <---Intron--
          8bp    > | ||||||||||||||/ |||||||||||||||||||||||||||||| <    95bp   
  Target           GHVCIVTNVASQUGKTEANYTQLVDLHARYAECGLRILAFPCNQFGRQ             
                   gcgtagaaggtctgaaggataccggtcgctggtgtcacgtctactgac             
                   gatgttcatccaggacacaacattatacgacaggtgttctcgaatgga             
                  gttgcccgcgctaacgaaacctgggcgcaccagttgccgtccccgccgg             
                               *                                                
  
  Query   -> EPGSNQEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGN <---Intron---> 
           > ||||||||||||||||||||||||||||||||||||||||||||||||||| <   913bp    > 
  Target     EPGSNQEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGN                
             gcgaacgaagtgggtagatgataaatgaggggccctataagccagagacga                
             acggaaataatccgaatatatagatgtagaacactgagtatacagggttga                
             gaattaacggtaccctcgttgccgctctcttccggggggacgcgcgcgta                t
                                                                                
  
  Query   AIKWNFTK <---Intron---> FLIDKNGCEVKRYGPMEEPQ <---Intron---> VIERDLPCYL
          |||||||| <    82bp    > |||||||| ||||||||||| <    76bp    > |||/||||||
  Target  AIKWNFTK                FLIDKNGCVVKRYGPMEEPQ                VIEKDLPCYL
          gaatataa                tcagaagtggactgcaggcc                gagagccttc
          ctagatca                tttaaaggttagagctaaca                ttaaatcgat
          ccggcttg                cctcgcccgggcctcgggtg                gcggcggctc