
genewise output
Score 20.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002180_2.0  207 STMKEAIQNYIGSLNWGYR                               
                     ST+ + +  ++ +L+WGY+                               
                     STLHKYLVQHVNNLHWGYK                               
KE993833.1:subs66002 tatcatcgccgaacctgta                               
                     cctaaattaataataggaa                               
                     acatgcgggtactgcgata                               


//
>KE993833.1:subseq(8949,100077).pep
STLHKYLVQHVNNLHWGYK
//
>KE993833.1:subseq(8949,100077).[66002:66058].sp
TCAACCTTACATAAGTACCTGGTGCAGCATGTAAACAATCTGCACTGGGGATATAAA
//
KE993833.1:subseq(8949,100077)	GeneWise	match	66002	66058	20.43	+	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	66002	66058	0.00	+	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
//

genewise output
Score 1127.11 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002180_2.0    1 MPPTGEAREAARTRVQGLVERVPVVLFSKSFCPFCEK             
                     MPPTGEAREAARTRVQGLVERVPVVLFSKSFCPFCEK             
                     MPPTGEAREAARTRVQGLVERVPVVLFSKSFCPFCEK             
KE993833.1:sub-69340 accagggcgggcacgcgcggcgcggttaaattcttga             
                     tcccgacgaccgcgtagttagtcttttgagtgctgaa             
                     gccgaaagggcaggtattggacagcgccgcctgccag             


SPP00002180_2.0   38                        VRGLGGELKVSYEALELDLI       
                                            V+GL  ELKVSYEALELDLI       
                                            VKGLFTELKVSYEALELDLI       
KE993833.1:sub-69229 GTGAGAG  Intron 1   CAGgagctagcagttggcgcgca       
                     <0-----[69229:65663]-0>tagttcatatcaactatatt       
                                            gggccaaggctcacgggcca       


SPP00002180_2.0   58                           DGPLIQEVLLEMTGQKTVPNVFV 
                                               DGPLIQEVLLEMTGQKTVPNVFV 
                               D:D[gac]        DGPLIQEVLLEMTGQKTVPNVFV 
KE993833.1:sub-65602 GGTACAAG  Intron 2   CAGACggccacggccgaagcaagcagtg 
                      <1-----[65601:63795]-1>  agcttaatttatcgaactcattt 
                                               tgtccggtgggggagaagccgtc 


SPP00002180_2.0   82 NKTHVGGCDKTIQ                       QLLAASTAPSPAP 
                     NKTHVGGCDKT+Q                       QLLA STAPSPAP 
                     NKTHVGGCDKTMQ                       QLLATSTAPSPAP 
KE993833.1:sub-63723 aaacgggtgaaacGTAAGGC  Intron 3   CAGcccgatagctcgc 
                     aacatgggaacta<0-----[63684:62665]-0>attcccccccccc 
                     cgtcgactcgggg                       agggccgccacaa 


SPP00002180_2.0  108 PVEDTDAVRHSYEYDLIVIGGGSGGLAASK                    
                     PVEDTDAV HSYEYDLIVIGGGSGGLAASK                    
                     PVEDTDAVHHSYEYDLIVIGGGSGGLAASK                    
KE993833.1:sub-62625 cgggagggccttgtgcagagggtggcggta                    
                     ctaacactaacaaaattttgggcggtccca                    
                     gggcgcagccccaccctccggccggctccg                    


SPP00002180_2.0  138                        EAAKLGKKVMVLDFVQPTPLGTSW   
                                            EAAKLGKKVMVLDFVQPTPLGTSW   
                                            EAAKLGKKVMVLDFVQPTPLGTSW   
KE993833.1:sub-62535 GCAAGAG  Intron 4   CAGgggacgaagagcgtgccaccgatt   
                     <0-----[62535:58188]-0>accatgaattttattaccctgccg   
                                            ggcgccggggggctgggcggcaag   


SPP00002180_2.0  162                           LGGTCVNVGCIPKKLMHQAALLG 
                                               LGGTCVNVGCIPKKLMHQAALLG 
                               G:G[ggc]        LGGTCVNVGCIPKKLMHQAALLG 
KE993833.1:sub-58115 GGTGAGCC  Intron 5   CAGGCcggatgaggtacaacaccggtcg 
                      <1-----[58114:57824]-1>  tggcgtatggtcaattaaccttg 
                                               gtcgtgcgcccgggggcggtgac 


SPP00002180_2.0  186 HALSDSRKFGWEYDQQ                          THNWSTM 
                     HALSDSRKFGWEYDQQ                          THNW+TM 
                     HALSDSRKFGWEYDQQ          V:V[gtg]        THNWNTM 
KE993833.1:sub-57752 cgctgtcatgtgtgccGGTGCGTT  Intron 6   CAGTGacataaa 
                     actcacgatggaaaaa <1-----[57703:57274]-1>  caagact 
                     cgcccgcgtcggccga                          tccgccg 


SPP00002180_2.0  210 KEAIQNYIGSLNWGYRVALRDHAVSYVNAFGTFTDAHAIK          
                     KEAIQNYIGSLNWGYRVALRDH VSYVNAFGTFTDAH IK          
                     KEAIQNYIGSLNWGYRVALRDHTVSYVNAFGTFTDAHTIK          
KE993833.1:sub-57250 aggacatagtcatgtcggccgcagatgagtgataggcaaa          
                     aactaaatgctaggagtctgaactgatactgctcacacta          
                     gaccgcctcgccgcccgagccttgccccacacccccctcg          


SPP00002180_2.0  250                        ATNKRGKETQHTAETFILAMGERPRY 
                                            ATNKRGKETQHTAETFILAMGERPRY 
                                            ATNKRGKETQHTAETFILAMGERPRY 
KE993833.1:sub-57130 GTACGCA  Intron 7   TAGgaaacgagaccaggatacgaggccct 
                     <0-----[57130:56612]-0>ccaaggaacaaccactttctgagcga 
                                            cccgccgacgcacgaccccggaaggc 


SPP00002180_2.0  276 LGIPGDKEFCIT                          DDLFSLPYCPG 
                     LGIPGDKEFCIT                          DD+FSLPYCPG 
                     LGIPGDKEFCIT           S:S[agc]       DDVFSLPYCPG 
KE993833.1:sub-56533 cgacggagttaaAGGTGTGGC  Intron 8   CAGCgggttccttcg 
                     tgtcgaaatgtc  <2-----[56495:51401]-2> aattctcagcg 
                     gccaacggtccc                          ccccgagcctc 


SPP00002180_2.0  300 KTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQQMAELAGDYM 
                     KTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQQMAELAGDYM 
                     KTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQQMAELAGDYM 
KE993833.1:sub-51366 aacggggatggcgtggttggcgcggagagctacccgtgccaggtgggta 
                     actttgcgatctagcgttcgtgtatctttgctttggtaaatcatcgaat 
                     gcgggccccggggccccggggggcgtgggcccggaattgggcagcaccg 


SPP00002180_2.0  349 EKHGVKFIRQFVPTK                       VEQLEAGTPGR 
                     EKHGVKFIRQFVPTK                       VEQLEAGTPGR 
                     EKHGVKFIRQFVPTK                       VEQLEAGTPGR 
KE993833.1:sub-51219 gacggatacctgcaaGTAGGGC  Intron 9   TAGggccgggacgc 
                     aaagtattgattcca<0-----[51174:50364]-0>taatacgccgg 
                     gacgcgcccgcgccg                       tgatgcccccc 


SPP00002180_2.0  375 LKVHAKATEGSELYEGEFNT                       VLIAVG 
                     LKVHAKATEGSELYEGEFNT                       VLIAVG 
                     LKVHAKATEGSELYEGEFNT                       VLIAVG 
KE993833.1:sub-50330 cagcgagaggtgctgggtaaGTGAGTC  Intron 10  TAGgcaggg 
                     tatacaccagcataagatac<0-----[50270:50078]-0>tttctg 
                     cgctggcggcgggcgcgccg                       ggccgg 


SPP00002180_2.0  401 RDACTSNIGLDVVGVKVDE                          TGKV 
                     RDACTSNIGLDVVGVKVDE                          TGKV 
                     RDACTSNIGLDVVGVKVDE           R:R[agg]       TGKV 
KE993833.1:sub-50059 aggtataagcgggggagggAGGTAGCCC  Intron 11  CAGGagag 
                     gacgccatgtattgtataa  <2-----[50000:49752]-2> cgat 
                     acccgcccggcgtggggtg                          gcgg 


SPP00002180_2.0  425 PVNDVEQTNVPHVYAIGDILQGKLELTPIAIQAGRLLAQRLYGGGTTK  
                     PVNDVEQTNVPHVYAIGDILQGKLELTPIAIQAGRLLA RLYGGGTTK  
                     PVNDVEQTNVPHVYAIGDILQGKLELTPIAIQAGRLLAHRLYGGGTTK  
KE993833.1:sub-49738 cgagggcaagccgtgaggaccgacgcacagacggcccgccctgggaaa  
                     ctaataacatcatactgattagatatcctctacggttcagtagggcca  
                     ggccggggcggctcaccccggcgggcgccccgtcgggccgccgccccg  


SPP00002180_2.0  473                        CDYVNVCTTVFTPLEYGCCGLSEERA 
                                            CDYVNVCTTVFTPLEYGCCGLSEERA 
                                            CDYVNVCTTVFTPLEYGCCGLSEERA 
KE993833.1:sub-49594 GTACCCA  Intron 12  CAGtgtgagtaagtaccgtgttgctggag 
                     <0-----[49594:48720]-0>gaatatgccttcctaaggggtcaagc 
                                            tctgcgcccgcgccgccccccagggc 


SPP00002180_2.0  499 IELLGGDNIE                       VFHSNFWPLEWTVAGG 
                     +ELLG DNIE                       VFHSNFWPLEWTVAGG 
                     FELLGEDNIE                       VFHSNFWPLEWTVAGG 
KE993833.1:sub-48641 tgtcgggaagGTGACAC  Intron 13  TAGgtcaattccgtagggg 
                     tattgaaata<0-----[48611:48330]-0>ttagatgctagctcgg 
                     caggaacccg                       ccccccgggggtgctt 


SPP00002180_2.0  525 DNNSCYAKILCNKADKAR                       DRVVGFHV 
                     DNNSCYAKILCNKADKAR                       DRVVGFHV 
                     DNNSCYAKILCNKADKAR                       DRVVGFHV 
KE993833.1:sub-48281 gaaattgaactaaggagcGTGCCCA  Intron 14  CAGgcgggtcg 
                     aaaggacattgaacaacg<0-----[48227:47902]-0>agttgtat 
                     tccccccgcctcgtcgat                       cggggccg 


SPP00002180_2.0  551 LGPNAGEITQGFGVAMKCGLTKAQLDDTIGIHPTCAEV            
                     LGPNAGEITQG+GVAMKCGLTKAQLDDTIGIHPTCAEV            
                     LGPNAGEITQGYGVAMKCGLTKAQLDDTIGIHPTCAEV            
KE993833.1:sub-47877 cgcagggaacgtgggaatgcaagccggaagaccatggg            
                     tgcacgatcagagtctaggtcacataactgtaccgcat            
                     tcccctgtcgccttcggcccagcggcccccccgcccgc            


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a R in phase 2 intron
>KE993833.1:subseq(8949,100077).pep
MPPTGEAREAARTRVQGLVERVPVVLFSKSFCPFCEKVKGLFTELKVSYEALELDLIDDG
PLIQEVLLEMTGQKTVPNVFVNKTHVGGCDKTMQQLLATSTAPSPAPPVEDTDAVHHSYE
YDLIVIGGGSGGLAASKEAAKLGKKVMVLDFVQPTPLGTSWGLGGTCVNVGCIPKKLMHQ
AALLGHALSDSRKFGWEYDQQVTHNWNTMKEAIQNYIGSLNWGYRVALRDHTVSYVNAFG
TFTDAHTIKATNKRGKETQHTAETFILAMGERPRYLGIPGDKEFCITSDDVFSLPYCPGK
TLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQQMAELAGDYMEKHGVKFIRQFV
PTKVEQLEAGTPGRLKVHAKATEGSELYEGEFNTVLIAVGRDACTSNIGLDVVGVKVDER
TGKVPVNDVEQTNVPHVYAIGDILQGKLELTPIAIQAGRLLAHRLYGGGTTKCDYVNVCT
TVFTPLEYGCCGLSEERAFELLGEDNIEVFHSNFWPLEWTVAGGDNNSCYAKILCNKADK
ARDRVVGFHVLGPNAGEITQGYGVAMKCGLTKAQLDDTIGIHPTCAEV
//
>KE993833.1:subseq(8949,100077).[69340:47762].sp
ATGCCCCCCACGGGAGAAGCACGGGAGGCGGCCCGAACGCGGGTTCAAGGTCTTGTGGAG
CGAGTCCCAGTGGTCTTGTTCAGCAAGAGCTTCTGTCCGTTCTGCGAAAAGGTGAAGGGG
CTCTTCACAGAACTGAAGGTCTCTTACGAAGCCCTGGAGCTGGACCTCATAGACGATGGG
CCTCTCATCCAGGAGGTTCTGCTGGAGATGACGGGACAGAAAACAGTGCCCAACGTGTTT
GTCAACAAGACTCACGTGGGAGGCTGTGACAAGACGATGCAGCAACTGCTGGCGACCTCC
ACGGCCCCCTCACCCGCACCACCGGTGGAGGACACGGACGCAGTGCACCACTCCTACGAA
TACGACCTCATTGTCATCGGGGGGGGCTCCGGGGGGCTCGCTGCCTCCAAGGAGGCGGCC
AAGCTCGGCAAGAAGGTGATGGTGCTGGACTTTGTGCAGCCGACCCCGCTGGGCACATCA
TGGGGCCTGGGTGGCACGTGTGTGAACGTGGGCTGCATCCCGAAGAAGCTGATGCACCAG
GCGGCTTTGCTAGGCCACGCGCTCTCCGACTCGCGCAAGTTTGGCTGGGAGTACGACCAG
CAAGTGACTCACAACTGGAACACCATGAAGGAAGCCATCCAGAACTACATTGGCTCGCTC
AACTGGGGCTACCGCGTGGCACTGCGCGACCATACTGTGAGCTACGTCAACGCATTCGGA
ACCTTCACCGACGCCCACACTATCAAGGCCACCAACAAGCGCGGCAAGGAAACCCAGCAC
ACAGCCGAGACATTCATCCTCGCCATGGGGGAACGACCGCGGTACCTGGGCATCCCAGGA
GACAAGGAGTTTTGCATCACCAGCGACGACGTCTTCTCGCTACCGTACTGCCCTGGCAAG
ACCCTGGTGGTGGGCGCCAGCTACGTGGCGCTGGAGTGCGCCGGCTTCTTGGCGGGGCTG
GGGCTGGACGTGACTGTGATGGTGCGCTCCATCCTGCTGCGAGGATTTGATCAGCAGATG
GCCGAATTGGCCGGAGACTACATGGAGAAACACGGGGTCAAGTTCATCCGCCAGTTCGTG
CCCACCAAGGTTGAGCAACTTGAGGCCGGCACCCCCGGCCGCCTCAAGGTCCATGCGAAG
GCCACGGAGGGCTCGGAGCTGTACGAGGGCGAGTTCAACACGGTGCTGATCGCCGTGGGG
AGAGACGCCTGCACGTCCAACATCGGGCTGGACGTGGTTGGGGTGAAGGTGGATGAGAGG
ACGGGCAAGGTGCCGGTGAACGACGTGGAGCAGACGAACGTGCCGCACGTTTACGCAATC
GGCGACATCCTGCAGGGCAAGCTGGAGCTCACGCCCATCGCCATCCAGGCTGGCCGGCTG
CTGGCCCACCGGCTCTACGGGGGCGGCACCACCAAGTGTGACTATGTGAACGTGTGCACC
ACCGTGTTCACGCCCCTCGAGTACGGCTGCTGCGGCCTCTCAGAGGAGAGGGCCTTCGAA
TTGCTGGGAGAAGACAACATCGAGGTCTTCCACAGCAACTTCTGGCCGCTGGAGTGGACT
GTGGCCGGTGGTGATAACAACAGCTGCTACGCCAAGATCCTCTGTAACAAGGCTGACAAG
GCACGTGACCGGGTGGTGGGGTTCCACGTGCTTGGCCCCAACGCCGGTGAGATTACCCAG
GGCTACGGTGTTGCCATGAAGTGCGGCCTCACAAAGGCCCAGCTGGACGACACCATCGGC
ATCCACCCGACCTGCGCCGAGGTC
//
KE993833.1:subseq(8949,100077)	GeneWise	match	69340	47764	1127.11	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	69340	69230	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	69229	65663	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	65662	65602	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	65601	63795	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	63794	63685	0.00	-	2	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	63684	62665	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	62664	62536	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	62535	58188	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	58187	58115	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	58114	57824	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	57823	57704	0.00	-	2	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	57703	57274	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	57273	57131	0.00	-	2	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	57130	56612	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	56611	56496	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	56495	51401	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	51400	51175	0.00	-	1	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	51174	50364	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	50363	50271	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	50270	50078	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	50077	50001	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	50000	49752	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	49751	49595	0.00	-	1	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	49594	48720	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	48719	48612	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	48611	48330	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	48329	48228	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	intron	48227	47902	0.00	-	.	KE993833.1:subseq(8949,100077)-genewise-prediction-1
KE993833.1:subseq(8949,100077)	GeneWise	cds	47901	47764	0.00	-	0	KE993833.1:subseq(8949,100077)-genewise-prediction-1
//
