
genewise output
Score 20.59 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000114_2.0   36 ELPVLDARGQRVPFGALFR                               
                     E+P L+A G    +G LFR                               
                     EVPTLEALGLNPGYGCLFR                               
KE993697.1:subs85299 ggcacggcgtacgtgtctc                               
                     atcctactgtacgaggttg                               
                     gcaccgcgtgctgtgtttg                               


//
>KE993697.1:subseq(3625927,100131).pep
EVPTLEALGLNPGYGCLFR
//
>KE993697.1:subseq(3625927,100131).[85299:85355].sp
GAGGTCCCAACCCTCGAGGCCCTGGGTTTGAACCCTGGGTATGGGTGTCTTTTTCGG
//
KE993697.1:subseq(3625927,100131)	GeneWise	match	85299	85355	20.59	+	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	85299	85355	0.00	+	0	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
//

genewise output
Score 144.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000114_2.0   59 VVVFVRHFLCYICKEYVEDLAKIPRSFLQ                     
                     V V V+HFLCY C+EYV+DL++IP ++L+                     
                     VCVCVQHFLCYACQEYVQDLSRIPENLLE                     
KE993697.1:sub-53583 gtgtgccttttgtcgtgcgcacacgaccgGTGATAC  Intron 1    
                     tgtgtaattgacgaaataatggtcaatta<0-----[53496:51303] 
                     atgtagccgccatgattatctataattcg                     


SPP00000114_2.0   88    EANVTLIVIGQSSYHHIE                       PFCKL 
                        EANV L+VIGQS   HI+                        F +L 
                        EANVRLVVIGQSMPRHIK                       RFREL 
KE993697.1:sub-51305 TAGggagctggagctacccaaGTAAAAA  Intron 2   CAGctcgc 
                     -0>acatgttttgactcgata<0-----[51248:50718]-0>gtgat 
                        gacagggtttatgatttg                       actac 


SPP00000114_2.0  111 TGYSHEIYVDPEREIYKRLGMKRGEEIASS                    
                     TGY +E++VDP+R+IYK L +K GE+                        
                     TGYRYELFVDPDRDIYKALELKMGEDADKI                    
KE993697.1:sub-50702 agtatgctggcgcgatagcgcaagggggaa                    
                     cgagaatttacagataactatatgaacaat                    
                     gtcgcgatgcatactcgatacggagttcgc                    


SPP00000114_2.0  141                           QSPHIKSNLLSGSLQSLWRAVTG 
                                               +SPH+   L  G  + LWRA+   
                               G:Y[tat]        KSPHVHCGLWWGVARGLWRAMWS 
KE993697.1:sub-50612 TGTAAGTG  Intron 3   CAGATaaccgctgcttgggcgctagata 
                      <1-----[50611:50134]-1>  agcataggtgggtcggtggctgg 
                                               atctcccggggggtatggacggc 


SPP00000114_2.0  165 PLFDFQGDPAQQGGTLILGP                          NNI 
                       FDFQGDP QQGG L+LGP                            + 
                     ESFDFQGDPKQQGGALVLGP          G:G[gga]        GRV 
KE993697.1:sub-50062 gatgtcggcaccgggtgcgcGGTCAGAA  Intron 4   CAGGAgcg 
                     agtatagacaaaggctttgc <1-----[50001:47181]-1>  ggt 
                     atttcggcgaagatcagcga                          ccg 


SPP00000114_2.0  189 HFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV            
                      F HRD   LDH PIN +L + G+  V+FT+R  V HV            
                     LFSHRDEAVLDHTPINRLLAVAGIPPVDFTHRHMVKHV            
KE993697.1:sub-47169 cttccggggcgcacaacccggggaccggtacacagacg            
                     ttcagaacttaacctagttctcgtcctatcagattaat            
                     ccccccgtggtcgcccttcgccacccgccacacgcacg            


//
Making a Y in phase 1 intron
Making a G in phase 1 intron
>KE993697.1:subseq(3625927,100131).pep
VCVCVQHFLCYACQEYVQDLSRIPENLLEEANVRLVVIGQSMPRHIKRFRELTGYRYELF
VDPDRDIYKALELKMGEDADKIYKSPHVHCGLWWGVARGLWRAMWSESFDFQGDPKQQGG
ALVLGPGGRVLFSHRDEAVLDHTPINRLLAVAGIPPVDFTHRHMVKHV
//
>KE993697.1:subseq(3625927,100131).[53583:47054].sp
GTATGTGTGTGTGTACAGCACTTCTTGTGCTACGCATGTCAGGAATATGTTCAAGATCTC
AGTCGAATTCCAGAAAATCTTCTCGAGGAGGCAAACGTACGGTTGGTGGTTATTGGTCAA
TCTATGCCACGTCATATTAAGCGATTCCGTGAACTCACGGGTTACAGGTACGAGCTATTT
GTGGACCCAGATCGAGACATTTACAAGGCACTTGAACTCAAGATGGGAGAGGATGCTGAC
AAGATCTATAAAAGTCCCCATGTCCACTGCGGGCTGTGGTGGGGGGTGGCTCGAGGTCTG
TGGAGAGCCATGTGGAGCGAAAGTTTTGATTTCCAGGGGGACCCGAAACAACAGGGAGGT
GCCTTAGTGCTCGGGCCAGGAGGCCGCGTGCTCTTCTCCCACCGCGACGAGGCTGTGCTG
GATCACACGCCCATCAACCGTCTTCTCGCGGTCGCCGGAATCCCCCCCGTGGACTTCACA
CACAGACACATGGTCAAACACGTG
//
KE993697.1:subseq(3625927,100131)	GeneWise	match	53583	47056	144.98	-	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	53583	53497	0.00	-	0	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	intron	53496	51303	0.00	-	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	51302	51249	0.00	-	0	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	intron	51248	50718	0.00	-	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	50717	50612	0.00	-	0	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	intron	50611	50134	0.00	-	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	50133	50002	0.00	-	2	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	intron	50001	47181	0.00	-	.	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
KE993697.1:subseq(3625927,100131)	GeneWise	cds	47180	47056	0.00	-	2	KE993697.1:subseq(3625927,100131)-genewise-prediction-1
//
