
genewise output
Score 22.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000092_2.0   11 LSLCLSLCLCLC                                      
                     L LC +LC+C+C                                      
                     LCLCFTLCVCVC                                      
KE993720.1:subs82064 ttcttattgtgt                                      
                     tgtgtctgtgtg                                      
                     gctttggctttc                                      


//
>KE993720.1:subseq(2135235,100098).pep
LCLCFTLCVCVC
//
>KE993720.1:subseq(2135235,100098).[82064:82099].sp
TTGTGCCTTTGTTTTACGTTGTGCGTTTGTGTTTGC
//
KE993720.1:subseq(2135235,100098)	GeneWise	match	82064	82099	22.82	+	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	82064	82099	0.00	+	0	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
//

genewise output
Score 169.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000092_2.0   22 CLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE   
                     CL  A+ +A   SC+D + C+V F+++ELRK+L+PL++HVTQEKGTE   
                     CLPCAVPTA---SCKDTRTCRVNFAEEELRKKLSPLEFHVTQEKGTE   
KE993720.1:sub-50131 tcctggcag   ttagaaatcgatggggccaataccgtcgacgagag   
                     gtcgctccc   cgaacgcggtatcaaatgaatgctatatcaaagca   
                     cgcctgcat   gcgcggatccctggggccgagcctgccgcgggccg   


SPP00000092_2.0   69                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AF G++  HK  G Y CVVC  P 
                                S:P[cct]       AFTGKFAEHKGKGTYGCVVCQVP 
KE993720.1:sub-49999 CCGTGAGTG  Intron 1   CAGTgtagatggcagagatgtggtcgc 
                       <2-----[49997:47734]-2> ctcgatcaaagagcaggttgatc 
                                               ccaggtggcgtaggccccccaga 


SPP00000092_2.0   93 LF                          SETKFDSGS             
                     LF                          S+ K+DSGS             
                     LF           K:T[aca]       SQAKYDSGS             
KE993720.1:sub-47663 ctACGTACGTT  Intron 2   TAGAtcgatgtgt             
                     tt  <2-----[47655:46521]-2> cacaaacgc             
                     cc                          aaagtttcc             


SPP00000092_2.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSF+++I++ A++ + D S+GM 
                               G:G[gga]        WPSFYNIISANAVSHSKDRSHGM 
KE993720.1:sub-46492 GGTATGTT  Intron 3   CAGGAtctttaaaagaggtctagctcga 
                      <1-----[46491:45496]-1>  gcctaattgcactcacaagcagt 
                                               gcgcctcatatgcgccactgtag 


SPP00000092_2.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HR E +C Q                       CGAHLGH+FDDGP PTG 
                     HRTEVTCGQ                       CGAHLGHVFDDGPPPTG 
KE993720.1:sub-45424 ccaggatgcGTGAGAG  Intron 4   CAGtggccgcgtgggcccag 
                     agcatcgga<0-----[45397:43501]-0>ggcatgattaagccccg 
                     catagaccg                       tgccgccgtccgaccag 


SPP00000092_2.0  155 KRYCINSAALSFTP-ADSSGTAE                           
                     KR+CINSA+L+F P A+  G AE                           
                     KRFCINSASLTFNPSAEEEGGAE                           
KE993720.1:sub-43449 acttaatgtcatacagggggggg                           
                     agtgtaccctctacgcaaaggca                           
                     accctcccggcccccagagtctg                           


//
Making a P in phase 2 intron
Making a T in phase 2 intron
Making a G in phase 1 intron
>KE993720.1:subseq(2135235,100098).pep
CLPCAVPTASCKDTRTCRVNFAEEELRKKLSPLEFHVTQEKGTEPAFTGKFAEHKGKGTY
GCVVCQVPLFTSQAKYDSGSGWPSFYNIISANAVSHSKDRSHGMHRTEVTCGQCGAHLGH
VFDDGPPPTGKRFCINSASLTFNPSAEEEGGAE
//
>KE993720.1:subseq(2135235,100098).[50131:43379].sp
TGCCTGCCCTGCGCTGTGCCCACAGCTTCGTGCAAGGACACGAGGACATGTCGCGTCAAC
TTTGCGGAGGAGGAGCTCCGCAAGAAATTGAGCCCCCTTGAGTTCCACGTGACCCAGGAG
AAGGGCACCGAGCCTGCCTTCACAGGGAAGTTTGCGGAGCACAAGGGTAAAGGGACGTAC
GGCTGCGTCGTCTGCCAAGTGCCACTCTTCACATCACAAGCAAAGTATGATTCTGGCTCC
GGATGGCCCTCGTTCTACAATATCATAAGTGCAAATGCGGTCTCGCACTCCAAAGACCGT
TCGCATGGAATGCACCGAACTGAAGTGACATGCGGCCAGTGTGGGGCCCACCTGGGCCAC
GTGTTTGACGACGGGCCACCCCCCACAGGGAAACGCTTCTGCATTAACTCCGCCTCGCTG
ACCTTCAACCCCAGCGCAGAGGAAGAGGGTGGCGCTGAG
//
KE993720.1:subseq(2135235,100098)	GeneWise	match	50131	43381	171.43	-	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	50131	49998	0.00	-	0	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	intron	49997	47734	0.00	-	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	47733	47656	0.00	-	1	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	intron	47655	46521	0.00	-	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	46520	46492	0.00	-	1	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	intron	46491	45496	0.00	-	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	45495	45398	0.00	-	2	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	intron	45397	43501	0.00	-	.	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
KE993720.1:subseq(2135235,100098)	GeneWise	cds	43500	43381	0.00	-	0	KE993720.1:subseq(2135235,100098)-genewise-prediction-1
//
