
genewise output
Score 395.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0    2 AGYEYVSPEQLAGFDKYK                       YSAVDTNP 
                     A + Y++ EQLAGFDKYK                       YSAVDTNP 
                     AEHAYITAEQLAGFDKYK                       YSAVDTNP 
KE993748.1:subs35281 ggcgtaaggccggtgataGTGAGCA  Intron 1   CAGtagggaac 
                     caacatccaatcgtaaaa<0-----[35335:39827]-0>agctacac 
                     ggcgccgcggcccccgcg                       cttgccca 


SPP00000074_2.0   28 LSLYVMHPFWNTIVK                       VFPTWLAPNLI 
                     LS+Y++HPFWN +VK                       +FP W+APNL+ 
                     LSVYILHPFWNFVVK                       LFPKWVAPNLL 
KE993748.1:subs39852 ctgtacccttatggaGTGAGTG  Intron 2   CAGctcatggcacc 
                     tctattactgattta<0-----[39897:41630]-0>ttcagtccatt 
                     gggccgcacgctgcg                       cccgggccccg 


SPP00000074_2.0   54 TFSGFLLVVFNFLLMAYFDPDFYAS                         
                     TFSGFLL+VFNF ++AY+D DFYAS                         
                     TFSGFLLLVFNFFILAYYDWDFYAS          A:G[ggt]       
KE993748.1:subs41664 attgtcccgtattatgttgtgttgtGGTAAAAA  Intron 3       
                     ctcgttttttattttcaaagatacc <1-----[41740:48705]    
                     ccgccggttttcccggtccgcccgt                         


SPP00000074_2.0   79      PGHKHVPDWVWIVV-GILNFVAYTLDGVDGKQARRTNSSTPLGE 
                             +H+P      + GI  FV    DG+DGKQARRT SSTPLGE 
                          VHCQHLPQQSDTAIRGIFVFVRSLTDGIDGKQARRTGSSTPLGE 
KE993748.1:subs48703 TAGGTgctcctccctgagacgatgtgctcaggaggacgccagtaactgg 
                     -1>  tagaatcaacacctggtttttgctcagtagaacggcgcgcctga 
                          tctgcgcagttgtaggctctgcgcacccccggggcgccccggag 


SPP00000074_2.0  123 LFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSH 
                     LFDHGLDSW+C++F  TVYSIFGRG TGVS+  +++LLWVVLFSFILSH 
                     LFDHGLDSWACLFFGSTVYSIFGRGQTGVSLATMHMLLWVVLFSFILSH 
KE993748.1:subs48840 ttgcgcgatgtcttgaagttatgcgcaggacgaacacctggctttactc 
                     ttaagtaggcgtttggctacttgggacgtgtcctatttgttttctttca 
                     gcccccccgccccccccccgcccccggcgccccgcggcgcgcccccgtc 


SPP00000074_2.0  172 WEKYNTGILFLPWGYDISQV                       TISFVY 
                     WEKYNTG+LFLPWGYDISQV                       TIS+VY 
                     WEKYNTGVLFLPWGYDISQV                       TISIVY 
KE993748.1:subs48987 tgataaggctcctgtgaacgGTAAGCC  Intron 4   CAGaatagt 
                     gaaaacgttttcggaatgat<0-----[49047:49999]-0>ctctta 
                     gggccgccccgcgcctccag                       ccctgc 


SPP00000074_2.0  198 IVTAVVGVEAWYEPFLFNFLYRDLFTAMII                    
                     IVTAVVGVEAW++ + F +LYRDLF  M++                    
                     IVTAVVGVEAWHQDLPFGLLYRDLFLFMLL                    
KE993748.1:subs50018 agagggggggtccgtctgcctcgttctacc                    
                     ttccttgtacgaaatctgttagattttttt                    
                     cgggggcggcgtgcgccagcctcacccggg                    


SPP00000074_2.0  228                           CALCVTLPMSLLNFF         
                                                A  VTLP+SL N+          
                               G:G[ggt]        GAFLVTLPQSLFNLH         
KE993748.1:subs50108 GGTGAGGG  Intron 5   TAGGTggttgatccattacc         
                      <1-----[50109:52745]-1>  gctttctcagttata         
                                               agtgccgcacgccgt         


SPP00000074_2.0  244                           SYKNNTLKLNSVYEAMVPLFSPC 
                                                          + + ++ +     
                                R:N[aat]       ----------ALLQTIILMGLAR 
KE993748.1:subs52793 AAGTGAGTT  Intron 6   CAGT          gtccaaatagcgc 
                       <2-----[52795:59810]-2>           cttacttttgtcg 
                                                         aagaacaggatta 


SPP00000074_2.0  268 LLFILSTAWILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTR 
                     LL  L  + I+ S S+IL    RV+  +     A   C+LIVCQMSSTR 
                     LLCGLYPSTIVDSGSNILLFVYRVL-CLPRHCRAREQCKLIVCQMSSTR 
KE993748.1:subs59851 tctgttctaaggtgaaacttgtcgt tcccctcgcgctacagtcaaaac 
                     ttggtacccttacggatttttagtt gtcgaggcgaagatttgatggcg 
                     gtttgcacacgttcctcagttttcg tcgacctgcggcggcgcagccgc 


SPP00000074_2.0  317 CPTLNWLLVPLFLVV-LVVNLGVASYVESILLYTLTTAFTLAHIHYGVR 
                     C  LNWLL PL   V  V        VE+ +L+ +T   T AHIHYGV  
                     CQPLNWLLAPLACAVAFVATFQPKVEVETAVLFGMTALVTAAHIHYGVC 
KE993748.1:subs59995 tcccatccgccgtgggtggatccaggggaggctgaagcgaggcactggt 
                     gactagttcctcgctcttcctacatatacctttgtccttcccataagtg 
                     cgggcgctggggccggcggtcgggggcggcggtcgggcctcgcccccgc 


SPP00000074_2.0  365 V                       VKQLSSHFQIYPFSLRKPNSD     
                     V                       V+QL  HF I  FSL KPNSD     
                     V                       VRQLCRHFGIRAFSLTKPNSD     
KE993748.1:subs60142 gGTAAGTG  Intron 7   CAGgacctcctgacgttcaacaag     
                     t<0-----[60145:62499]-0>tgatggatgtgctctcacaga     
                     g                       ggggcactccatcgcggaccc     


//
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a N in phase 2 intron
>KE993748.1:subseq(139344,100122).pep
AEHAYITAEQLAGFDKYKYSAVDTNPLSVYILHPFWNFVVKLFPKWVAPNLLTFSGFLLL
VFNFFILAYYDWDFYASGVHCQHLPQQSDTAIRGIFVFVRSLTDGIDGKQARRTGSSTPL
GELFDHGLDSWACLFFGSTVYSIFGRGQTGVSLATMHMLLWVVLFSFILSHWEKYNTGVL
FLPWGYDISQVTISIVYIVTAVVGVEAWHQDLPFGLLYRDLFLFMLLGGAFLVTLPQSLF
NLHNALLQTIILMGLARLLCGLYPSTIVDSGSNILLFVYRVLCLPRHCRAREQCKLIVCQ
MSSTRCQPLNWLLAPLACAVAFVATFQPKVEVETAVLFGMTALVTAAHIHYGVCVVRQLC
RHFGIRAFSLTKPNSD
//
>KE993748.1:subseq(139344,100122).[35281:62562].sp
GCGGAGCACGCGTACATCACGGCCGAGCAGCTCGCCGGCTTCGACAAGTACAAGTACAGT
GCTGTGGACACCAACCCACTGTCGGTGTACATCCTGCACCCATTCTGGAACTTTGTGGTC
AAGCTCTTCCCCAAGTGGGTGGCCCCCAACCTCCTGACCTTCTCGGGCTTCCTGCTGCTT
GTTTTTAATTTCTTCATCTTGGCGTATTACGACTGGGACTTCTACGCGTCTGGTGTTCAC
TGTCAGCACTTGCCCCAACAGTCTGATACGGCTATACGGGGGATCTTTGTCTTTGTGCGC
TCGCTCACAGACGGCATCGACGGCAAGCAGGCGCGGCGCACGGGCTCCAGCACCCCGTTG
GGAGAGTTGTTCGACCACGGCCTCGACAGCTGGGCCTGCCTCTTCTTCGGCAGCACCGTC
TACTCGATCTTCGGCCGCGGCCAGACGGGCGTGAGCCTCGCCACCATGCACATGCTGCTC
TGGGTCGTGCTCTTCTCCTTCATCCTGTCTCACTGGGAGAAGTACAACACGGGCGTCCTC
TTCCTGCCCTGGGGCTACGATATCAGCCAAGTGACCATCTCCATTGTGTACATCGTGACG
GCGGTGGTGGGCGTGGAGGCCTGGCATCAGGACTTGCCCTTCGGACTGCTCTACCGTGAC
TTATTCCTCTTCATGCTGCTGGGTGGAGCGTTTTTGGTCACCTTGCCCCAAAGCTTGTTC
AACCTGCATAATGCATTACTGCAAACAATCATATTGATGGGACTTGCTCGATTGCTTTGT
GGTTTGTACCCATCCACAATCGTGGATTCTGGCAGCAATATCCTATTGTTTGTTTATCGT
GTCTTGTGTCTCCCGCGACACTGCCGTGCGCGCGAGCAGTGCAAGCTGATCGTGTGCCAA
ATGAGCAGCACGCGCTGCCAGCCGCTGAACTGGCTCCTTGCGCCGCTGGCGTGCGCCGTG
GCGTTCGTGGCGACTTTCCAGCCGAAGGTGGAGGTCGAGACGGCCGTGCTGTTTGGCATG
ACGGCGCTCGTCACTGCCGCGCACATCCACTACGGCGTGTGCGTGGTGAGGCAGCTGTGC
CGACACTTTGGCATCCGAGCTTTCTCGCTCACGAAGCCAAACAGCGAC
//
KE993748.1:subseq(139344,100122)	GeneWise	match	35281	62562	403.99	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	35281	35334	0.00	+	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	35335	39827	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	39828	39896	0.00	+	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	39897	41630	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	41631	41739	0.00	+	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	41740	48705	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	48706	49046	0.00	+	2	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	49047	49999	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	50000	50108	0.00	+	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	50109	52745	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	52746	52794	0.00	+	2	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	52795	59810	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	59811	60144	0.00	+	1	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	intron	60145	62499	0.00	+	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	62500	62562	0.00	+	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
//

genewise output
Score 20.62 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0  303 STCQLIVCQMSSTRCPTL                                
                     S C +++C  S+ R PT+                                
                     SPCSILICVASTNRLPTV                                
KE993748.1:sub-84164 tcttacatggtaaatcag                                
                     ccgctttgtcccagtcct                                
                     gccattttttcgcaacgg                                


//
>KE993748.1:subseq(139344,100122).pep
SPCSILICVASTNRLPTV
//
>KE993748.1:subseq(139344,100122).[84164:84109].sp
TCGCCCTGCTCAATTCTTATTTGTGTTGCTTCCACGAACAGATTACCCACGGTG
//
KE993748.1:subseq(139344,100122)	GeneWise	match	84164	84111	20.62	-	.	KE993748.1:subseq(139344,100122)-genewise-prediction-1
KE993748.1:subseq(139344,100122)	GeneWise	cds	84164	84111	0.00	-	0	KE993748.1:subseq(139344,100122)-genewise-prediction-1
//
