
genewise output
Score 342.22 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0   10 LEPYMDENFISRAFATMGETVMSVKIIRNRLT                  
                     L+PYMDE F+  AFA++GE+V++VKIIRN+ T                  
                     LDPYMDETFVLNAFASQGESVVTVKIIRNKHT                  
KE994103.1:subs50024 cgctaggatgcagtgtcggaggagaaaaaaca                  
                     tacataactttactccagagttctattgaaac                  
                     gcacgcggtggcgtccgagtgccggccgcact                  


SPP00000146_2.0   42                           IPAGYCFVEFADLATAEKCLHKI 
                                                PAGYCFVEF+D ++AE+CLH++ 
                                G:G[ggc]       GPAGYCFVEFSDQSSAERCLHRL 
KE994103.1:subs50120 GGGTGAGCC  Intron 1   CAGCgcggtttggttgctaggctccac 
                       <2-----[50122:51869]-2> gccgagttatcaacgcaggtagt 
                                               cgtgcctggcgcggcgggcgcgc 


SPP00000146_2.0   66 NGKPLPGATP                       AKRFKLNYATYGKQPD 
                     NGK LPG+ P                        +RFKLNYAT+ KQPD 
                     NGKALPGSNP                       QRRFKLNYATHNKQPD 
KE994103.1:subs51940 agagccgtacGTCAGTG  Intron 2   CAGccatacatgacaaccg 
                     agactcgcac<0-----[51970:52346]-0>aggtataaccaaaaca 
                     tgggtcaccg                       aggtacccaaccgact 


SPP00000146_2.0   92 N                          PEYSLFVGDLTPDVDDGMLYEF 
                                                PE+S+FVGDL+ DV++  LY F 
                     G           S:R[cgc]       PEFSIFVGDLSADVENHHLYNF 
KE994103.1:subs52395 gCGGTAAGGA  Intron 3   CAGCcgttatgggctggggaccctat 
                     g  <2-----[52400:53561]-2> catctttgatccataaaataat 
                     a                          ggtcccgtcccgcggcccgccc 


SPP00000146_2.0  116 FVKVYPSCRGGKVVLDQTGVS                          GY 
                     F++ YPSC  GKV+ D +G+S                          GY 
                     FLQKYPSCMSGKVITDLSGIS           K:R[aga]       GY 
KE994103.1:subs53629 tccatcttatgagaagctgatAGGTGAGCG  Intron 4   CAGAgt 
                     ttaaaccgtcgattcatcgtc  <2-----[53694:54010]-2> ga 
                     cggatggcgccggcccggccg                          ac 


SPP00000146_2.0  140 GFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK             
                     GFV+F +E EQ+RAL E QGA GLG++P++LS+A PK             
                     GFVRFGEESEQRRALVEMQGASGLGNRPIKLSLATPK             
KE994103.1:subs54018 gtgctgggtgcaagcggacggtgcgaccaacacgaca             
                     gttgtgaacaaggcttatagccgtgagctatgtccca             
                     gtgttcgggggaggggggaagggtccaacgccctgcg             


SPP00000146_2.0  177                           ---ASRVKPVEYSQMYSYSYNQY 
                                                  A R +  EY Q   YSY QY 
                                -:S[agt]       ASGAGRSRQ-EYGQSQGYSYGQY 
KE994103.1:subs54129 AGGTGATCC  Intron 5   CAGTgagggatcc gtgcacgtatgct 
                       <2-----[54131:57695]-2> cggcggcga aagagagagagaa 
                                               ccttggtgg gcagcaccccggc 


SPP00000146_2.0  197 YQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ               
                     YQ Y NYY QWGYDQ TGSYSYS PQYGYTQS+MQ               
                     YQPYPNYYTQWGYDQYTGSYSYSMPQYGYTQSSMQ               
KE994103.1:subs57763 tcctcattactgtgctagatataacctgtacatac               
                     aacacaaacaggaaaacggagagtcaagacagcta               
                     cgccccccaggaccgcaacccccgtgtcccgccgg               


SPP00000146_2.0  232                        TYEEVGDDALE                
                                             YE++GDDALE                
                                            CYEDLGDDALE                
KE994103.1:subs57868 GTGTGTA  Intron 6   CAGttggcggggtg                
                     <0-----[57868:61999]-0>gaaatgaacta                
                                            ttattactcga                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               P P+LDV EAN E+MEQSEELY  
                               D:D[gac]        PEPKLDVDEANLELMEQSEELYH 
KE994103.1:subs62033 GGTTAGTT  Intron 7   CAGACcgcacgggggacgcagcaggctc 
                      <1-----[62034:64566]-1>  cacatataacatattaagaataa 
                                               cgcagcccaccgggggacaggcc 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPA                               
                     A+M CHWQPLD  +SE+ A                               
                     AIMACHWQPLDQPTSELAA                               
KE994103.1:subs64638 gaagtctcccgccatgcgg                               
                     cttcgagactaacccatcc                               
                     ccggccggtccgccggccc                               


//
Making a G in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a S in phase 2 intron
Making a D in phase 1 intron
>KE994103.1:subseq(219090,100122).pep
LDPYMDETFVLNAFASQGESVVTVKIIRNKHTGGPAGYCFVEFSDQSSAERCLHRLNGKA
LPGSNPQRRFKLNYATHNKQPDGRPEFSIFVGDLSADVENHHLYNFFLQKYPSCMSGKVI
TDLSGISRGYGFVRFGEESEQRRALVEMQGASGLGNRPIKLSLATPKSASGAGRSRQEYG
QSQGYSYGQYYQPYPNYYTQWGYDQYTGSYSYSMPQYGYTQSSMQCYEDLGDDALEDPEP
KLDVDEANLELMEQSEELYHAIMACHWQPLDQPTSELAA
//
>KE994103.1:subseq(219090,100122).[50024:64694].sp
CTGGACCCATACATGGACGAGACGTTTGTGCTGAACGCGTTTGCCTCCCAGGGAGAGAGT
GTGGTCACCGTGAAGATCATCAGGAACAAACACACTGGCGGCCCGGCTGGGTACTGCTTT
GTGGAGTTCTCGGACCAGTCGAGCGCGGAGCGGTGCCTGCACAGGCTCAATGGGAAGGCG
CTTCCCGGATCCAACCCGCAACGGAGGTTTAAACTCAACTACGCAACACACAACAAGCAA
CCCGATGGACGCCCGGAGTTTTCCATCTTCGTGGGTGACCTCTCCGCGGACGTGGAGAAC
CACCACCTGTACAACTTCTTCCTGCAGAAATATCCGTCGTGCATGTCCGGCAAGGTGATC
ACCGACCTGTCGGGCATCTCGAGAGGATACGGGTTTGTGCGTTTTGGCGAGGAGTCGGAG
CAGAGAAGGGCGCTGGTGGAGATGCAAGGAGCGTCGGGGCTTGGCAACCGACCAATCAAG
CTCAGCCTCGCTACGCCCAAGAGTGCCAGCGGTGCTGGGAGGTCTCGGCAGGAGTACGGA
CAGAGCCAAGGCTACAGCTACGGGCAGTACTACCAGCCCTACCCCAACTACTACACACAG
TGGGGATACGACCAGTACACAGGAAGCTACAGCTACAGCATGCCTCAGTATGGCTACACC
CAGAGCTCCATGCAGTGTTATGAAGATCTTGGAGACGATGCCTTGGAAGACCCCGAGCCC
AAACTGGACGTCGACGAAGCCAACCTGGAGCTGATGGAGCAAAGCGAAGAGCTGTACCAC
GCCATCATGGCGTGCCACTGGCAGCCTCTCGACCAGCCCACCTCGGAGCTCGCCGCC
//
KE994103.1:subseq(219090,100122)	GeneWise	match	50024	64694	344.22	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	50024	50121	0.00	+	0	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	50122	51869	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	51870	51969	0.00	+	1	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	51970	52346	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	52347	52399	0.00	+	0	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	52400	53561	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	53562	53693	0.00	+	1	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	53694	54010	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	54011	54130	0.00	+	1	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	54131	57695	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	57696	57867	0.00	+	1	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	57868	61999	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	62000	62033	0.00	+	0	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	intron	62034	64566	0.00	+	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	64567	64694	0.00	+	2	KE994103.1:subseq(219090,100122)-genewise-prediction-1
//

genewise output
Score 17.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0   14 MDENFISRAFATMGETVMSVKIIR                          
                     MD  FI+RAF   GE V  + + R                          
                     MDSLFITRAF---GEAVKKLSLAR                          
KE994103.1:sub-70968 agtctaacgt   ggggaattcgc                          
                     tactttcgct   gactaatctcg                          
                     gcatccgagc   cgaaagggtag                          


//
>KE994103.1:subseq(219090,100122).pep
MDSLFITRAFGEAVKKLSLAR
//
>KE994103.1:subseq(219090,100122).[70968:70904].sp
ATGGACTCACTTTTCATCACGCGAGCGTTCGGCGAGGCAGTAAAAAAGTTGTCGCTTGCA
CGG
//
KE994103.1:subseq(219090,100122)	GeneWise	match	70968	70906	19.80	-	.	KE994103.1:subseq(219090,100122)-genewise-prediction-1
KE994103.1:subseq(219090,100122)	GeneWise	cds	70968	70906	0.00	-	0	KE994103.1:subseq(219090,100122)-genewise-prediction-1
//
