
genewise output
Score 232.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000054_2.0  477 VSVGAVPVLSKECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPK 
                     V   + P+  KE   G   +       PHNPLDSSAP +K+GK+RE P+ 
                     VGTASAPLPKKETLLGSSKKSGRGGPAPHNPLDSSAPAVKRGKERETPR 
KE993822.1:subs49919 ggagtgcccaagaccgttaaagcggcgccaccgtagcggacgagcgacc 
                     tgccccctcaaacttgccaagggggcccaactacgccctaggaagaccg 
                     tcacacggtgagcggctcggtgcgttgaccggcgccgcggccggcgagc 


SPP00000054_2.0  526 AKKPTSLKK                       IILKERQERKQR--LQE 
                     AKKPT+LKK                       +ILKER+ERK+R   +E 
                     AKKPTTLKK                       VILKEREERKRRRLCEE 
KE993822.1:subs50066 gaacaacaaGTGAGGG  Intron 1   AAGgacagcggaaaccttgg 
                     caaccctaa<0-----[50093:50678]-0>tttaagaagagggtgaa 
                     cgacagggg                       gcgggcggggggtgcgg 


SPP00000054_2.0  550 NAV-------SPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDE---LI 
                       +       SPA  +D  +D    G D+   +++  G EG DE      
                     RGLVYVPGGDSPASDADARKDEGGEGKDEGKAESKDEGGEGKDEGGEGK 
KE993822.1:subs50730 cgcgtgcgggtcgaggggcaggggggagggaggaaggggggagggggga 
                     ggttatcggacccgacacgaaaggagaaagacagaaaggagaaaggaga 
                     accgcgccccggtctccgcgtgtcgcgcgcgcgcgtgtcgcgtgtcgcg 


SPP00000054_2.0  589 STPSVEDKSE                          ---EPPGTELQRD 
                          E K E                                G E     
                     DEGKAEGKDE          -:A[gcc]        TDVDEDGRESPSP 
KE993822.1:subs50877 gggagggaggGGTGGCGA  Intron 2   TAGCCaggggggcgtctc 
                     aagacagaaa <1-----[50908:52083]-1>  cataaaggacccc 
                     cgcgcgcgta                          gcgtgtgcgcgtc 


SPP00000054_2.0  609 TEASHLAPNHTTFPKIHSRRFR                          Y 
                        + L P     PKIHSRRFR                          Y 
                     VVRAELPP---PGPKIHSRRFR           D:D[gac]       Y 
KE993822.1:subs52125 ggaggccc   cgcaacacctcGAGTAAGCG  Intron 3   CAGCt 
                     ttgcatcc   cgcatagggtg  <2-----[52184:54904]-2> a 
                     cgaagcgg   accgtcccccc                          c 


SPP00000054_2.0  633 CSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVL 
                     C+Q+LS+E+D C + +L ELVRFQ+R++++DP +A+ KRRLV+GLREV  
                     CNQVLSREIDQCASAMLLELVRFQERLFERDPERARRKRRLVMGLREVT 
KE993822.1:subs54909 tacgcacgagctgagaccgcgctcgcctgcgcgcgccacccgagccgga 
                     gaattggataagcgctttattgtaagttagacagcggaggtttgtgatc 
                     ccgggctgacgcccgggggcgccggcgcgcccgctccgccccgccgggc 


SPP00000054_2.0  682 KHLKLKKLKCVIISPNCEKIQSK                           
                     KHL+L+KL+ +IISPNCEKIQ+K                           
                     KHLRLRKLRALIISPNCEKIQAK          G:G[ggc]         
KE993822.1:subs55056 acccccaccgcaatcatgaacgaGGTCGGCA  Intron 4   CAGGC 
                     aatgtgatgctttccagaataca <1-----[55126:56424]-1>   
                     gcgcgcggtgcccgcccggcgca                           


SPP00000054_2.0  706 GLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDG 
                     GLD+ L T+I  A EQ++PFVFALNRKALG  LNK VPVSVVG+F Y G 
                     GLDEALQTVIALASEQSVPFVFALNRKALGHCLNKKVPVSVVGVFHYGG 
KE993822.1:subs56427 gcgggccagagcgagcagctgtgcacagcgctcaaagcgaggggtctgg 
                     gtaactacttctcgaagtctttctagactgagtaaatctgttgttaagg 
                     agcgcggggtgcccggccttgcgcccgggcccccggccgcggggccccc 


SPP00000054_2.0  755 AQ                       DQFHKMVELTVAARQAYKTMLENV 
                     A+                         F ++V LT  AR AY+ M+ ++ 
                     AE                       THFQRLVALTEEARSAYRDMVSSL 
KE993822.1:subs56574 ggGTGATCT  Intron 5   CAGactcccggcagggctgtcgagatc 
                     ca<0-----[56580:57473]-0>catagttctcaacgccagattgct 
                     cg                       gctgggggagggtctccccgccag 


SPP00000054_2.0  781 QQELVG                                            
                     QQ+  G                                            
                     QQQEAG                                            
KE993822.1:subs57546 cccggg                                            
                     aaaacg                                            
                     gggggc                                            


//
Making a A in phase 1 intron
Making a D in phase 2 intron
Making a G in phase 1 intron
>KE993822.1:subseq(693546,100104).pep
VGTASAPLPKKETLLGSSKKSGRGGPAPHNPLDSSAPAVKRGKERETPRAKKPTTLKKVI
LKEREERKRRRLCEERGLVYVPGGDSPASDADARKDEGGEGKDEGKAESKDEGGEGKDEG
GEGKDEGKAEGKDEATDVDEDGRESPSPVVRAELPPPGPKIHSRRFRDYCNQVLSREIDQ
CASAMLLELVRFQERLFERDPERARRKRRLVMGLREVTKHLRLRKLRALIISPNCEKIQA
KGGLDEALQTVIALASEQSVPFVFALNRKALGHCLNKKVPVSVVGVFHYGGAETHFQRLV
ALTEEARSAYRDMVSSLQQQEAG
//
>KE993822.1:subseq(693546,100104).[49919:57563].sp
GTTGGCACAGCCTCAGCCCCGCTGCCTAAGAAAGAGACCCTGCTGGGCTCTTCCAAGAAG
AGTGGGCGCGGGGGTCCTGCGCCACACAACCCGCTGGACTCGAGCGCCCCGGCCGTGAAG
CGCGGCAAGGAGCGCGAGACACCGCGCGCCAAGAAACCCACAACGCTGAAGAAGGTGATC
CTGAAGGAGCGCGAGGAGAGGAAGAGGCGGCGTTTGTGCGAGGAGCGAGGCCTCGTGTAC
GTGCCCGGCGGCGACTCGCCGGCTAGCGATGCCGACGCGCGCAAGGATGAGGGTGGCGAG
GGCAAGGACGAGGGCAAGGCCGAGAGCAAGGATGAGGGTGGCGAGGGCAAGGATGAGGGT
GGCGAGGGCAAGGACGAGGGCAAGGCCGAGGGCAAGGATGAAGCCACGGACGTGGATGAG
GATGGGCGCGAGTCCCCGTCTCCCGTCGTGAGAGCAGAGCTCCCGCCGCCAGGCCCCAAG
ATTCACAGCCGCCGCTTCCGCGACTACTGCAACCAGGTGCTGAGCCGTGAGATAGACCAG
TGCGCCAGCGCGATGCTGCTGGAGCTCGTGCGCTTCCAGGAGCGCCTGTTCGAGCGCGAC
CCCGAGCGCGCTCGCCGCAAGCGCCGCCTCGTCATGGGCCTCCGGGAGGTGACCAAGCAC
CTGCGCCTGCGCAAGCTGCGTGCGCTCATCATCTCGCCCAACTGCGAGAAGATCCAGGCC
AAAGGCGGACTGGACGAGGCCCTGCAGACGGTGATTGCGCTCGCCAGCGAGCAGAGCGTC
CCTTTTGTGTTCGCGCTCAACCGCAAGGCGCTGGGCCACTGCCTCAACAAGAAGGTCCCC
GTGAGCGTGGTGGGGGTGTTCCACTACGGCGGCGCCGAGACGCACTTTCAGCGGCTGGTG
GCGCTAACGGAGGAGGCTCGCTCTGCCTACCGCGACATGGTCAGCTCACTGCAGCAGCAG
GAGGCGGGC
//
KE993822.1:subseq(693546,100104)	GeneWise	match	49919	57563	245.71	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	49919	50092	0.00	+	0	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	intron	50093	50678	0.00	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	50679	50907	0.00	+	0	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	intron	50908	52083	0.00	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	52084	52183	0.00	+	2	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	intron	52184	54904	0.00	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	54905	55125	0.00	+	1	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	intron	55126	56424	0.00	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	56425	56579	0.00	+	2	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	intron	56580	57473	0.00	+	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	57474	57563	0.00	+	0	KE993822.1:subseq(693546,100104)-genewise-prediction-1
//

genewise output
Score 23.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000054_2.0  184 YAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENN 
                     +   +LK +GY   T RK+  I   V     E  + T+ +P + G   N 
                     HVHQALKMNGYSNYTIRKA--ITPTVGKEPSEDRIKTITLPYIAGVTKN 
KE993822.1:sub-17638 cgccgcaaagttataacag  aacaggagctggcaaaaatctagggaaa 
                     ataactatagacaactgac  tccctgaaccaagtactctcatcgtcaa 
                     cacatcggtataccactat  ccactgaaatgcacacccgacaagccat 


SPP00000054_2.0  233 MSEIQK----QPKWGPVHSVSTDISLLREVV                   
                     +S+I      Q ++  VH +   I  +++V+                   
                     ISKIMSKHKIQVRFNTVHKIRDLIPSVKDVI                   
KE993822.1:sub-17497 ataaaaacaacgctaagcaacgcactgagga                   
                     tcattgaaatatgtactaatgattcctaatt                   
                     ccacgcacgcgtatcaatatttgcatggtgc                   


//
>KE993822.1:subseq(693546,100104).pep
HVHQALKMNGYSNYTIRKAITPTVGKEPSEDRIKTITLPYIAGVTKNISKIMSKHKIQVR
FNTVHKIRDLIPSVKDVI
//
>KE993822.1:subseq(693546,100104).[17638:17403].sp
CACGTACACCAAGCTCTCAAGATGAATGGATATTCAAACTACACAATCCGTAAAGCTATC
ACCCCAACCGTTGGGAAAGAACCATCTGAGGACCGAATCAAAACCATCACCTTGCCATAC
ATAGCAGGGGTCACCAAAAATATCTCCAAAATCATGAGCAAACACAAGATCCAGGTTCGA
TTTAACACAGTACATAAAATTCGTGATCTGATCCCATCTGTGAAGGATGTGATC
//
KE993822.1:subseq(693546,100104)	GeneWise	match	17638	17405	27.06	-	.	KE993822.1:subseq(693546,100104)-genewise-prediction-1
KE993822.1:subseq(693546,100104)	GeneWise	cds	17638	17405	0.00	-	0	KE993822.1:subseq(693546,100104)-genewise-prediction-1
//
