
genewise output
Score 17.91 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0  139 DAHPLWKWM                                         
                     D  PLW W+                                         
                     DTLPLWSWL                                         
KE993701.1:subs30066 gatcttttt                                         
                     actctgcgt                                         
                     cggtggggg                                         


//
>KE993701.1:subseq(1238345,100152).pep
DTLPLWSWL
//
>KE993701.1:subseq(1238345,100152).[30066:30092].sp
GACACGTTGCCTTTGTGGTCGTGGTTG
//
KE993701.1:subseq(1238345,100152)	GeneWise	match	30066	30092	17.91	+	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	30066	30092	0.00	+	0	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
//

genewise output
Score 182.15 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0   27 TMCASRDDWRCARSMHEFSAKDIDGHMVNLDKY                 
                     T+  S D W+ A+SM+EFSAKDIDG+ V+L+KY                 
                     TQAESADLWKDAKSMYEFSAKDIDGNEVSLEKY                 
KE993701.1:sub-52428 acggtggctaggaaatgttgagaggaggttgat                 
                     cacaccatgaacagtaatccaatagaatctaaa                 
                     tgcatgttgatggcgcgcgggcccgtagaaaac                 


SPP00000026_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                                 VCIV NVAS+XGKT VNYTQL 
                                R:K[aaa]       DHVCIVVNVASKXGKTAVNYTQL 
KE993701.1:sub-52329 AAGTGCGGG  Intron 1   CAGAgcgtaggaggtatgaaggatacc 
                       <2-----[52327:50148]-2> aatgtttatccaggacctaacat 
                                               cctccggcggggaggtcgcctgc 


SPP00000026_2.0   84 VDLHARYAEC-GLRILAFPCNQFGKQ                        
                       LH +YAE  GLRILAFPCNQFGKQ                        
                     AALHKQYAESHGLRILAFPCNQFGKQ                        
KE993701.1:sub-50077 ggccactggacgccacgtctactgacGTAGGGG  Intron 2   CAG 
                     cctaaaacagagtgttctcgaatgaa<0-----[49999:48792]-0> 
                     ttgcggctgcccccctcccccgtcgg                        


SPP00000026_2.0  109 EPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 
                     EPG++ EIKEF   YNV+FDMFSKI VN D AHPLWKW+K QP G+G L 
                     EPGTDAEIKEFVKKYNVEFDMFSKIDVNSDSAHPLWKWLKSQPNGRGTL 
KE993701.1:sub-48791 gcgagggaagtgaataggtgattaaggatgagccctatcaaccagagat 
                     acgcacataattaaaatatattcatatacagcactgagtagacagggct 
                     agcgcggaggtgggctggccgccacccctccgcaggggggcgcccgccg 


SPP00000026_2.0  158 G                          AIKWNFTK               
                                                AIKWNFTK               
                     Y           N:N[aat]       AIKWNFTK               
KE993701.1:sub-48644 tAAGTGCGTC  Intron 3   CAGTgaatataa               
                     a  <2-----[48639:47271]-2> ctagatca               
                     c                          acggctcg               


SPP00000026_2.0  168                        FLIDKNGCVVKRYGPMEEPLV      
                                            FLIDK+G VVKRYGP+++P+V      
                                            FLIDKHGQVVKRYGPVDDPVV      
KE993701.1:sub-47245 GTATGTT  Intron 4   CAGtcagacgcggactgcgggcgg      
                     <0-----[47245:46694]-0>tttaaagattagagctaactt      
                                            tcctgtaggcgaccagttcga      


//
Making a K in phase 2 intron
Making a N in phase 2 intron
>KE993701.1:subseq(1238345,100152).pep
TQAESADLWKDAKSMYEFSAKDIDGNEVSLEKYKDHVCIVVNVASKXGKTAVNYTQLAAL
HKQYAESHGLRILAFPCNQFGKQEPGTDAEIKEFVKKYNVEFDMFSKIDVNSDSAHPLWK
WLKSQPNGRGTLYNAIKWNFTKFLIDKHGQVVKRYGPVDDPVV
//
>KE993701.1:subseq(1238345,100152).[52428:46629].sp
ACTCAGGCCGAATCTGCGGATCTTTGGAAAGATGCGAAGAGCATGTACGAGTTCTCGGCG
AAGGACATCGACGGGAATGAAGTGTCATTAGAAAAATACAAAGACCACGTTTGCATCGTG
GTGAACGTGGCGTCGAAGTGAGGGAAGACTGCCGTGAACTACACTCAGCTCGCTGCTCTG
CACAAGCAGTACGCTGAGAGCCACGGCCTCCGCATCCTTGCCTTCCCCTGCAACCAGTTT
GGCAAGCAGGAACCGGGCACGGACGCGGAGATAAAGGAGTTTGTGAAGAAGTACAATGTG
GAGTTCGACATGTTCTCCAAAATCGACGTCAACTCTGACAGCGCGCACCCACTGTGGAAG
TGGCTGAAGAGCCAGCCCAACGGCAGGGGCACCTTGTACAATGCAATCAAGTGGAACTTT
ACCAAGTTTCTCATCGATAAGCATGGACAGGTGGTCAAGCGATACGGCCCAGTGGATGAT
CCCGTGGTA
//
KE993701.1:subseq(1238345,100152)	GeneWise	match	52428	46631	182.15	-	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	52428	52328	0.00	-	0	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	intron	52327	50148	0.00	-	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	50147	50000	0.00	-	1	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	intron	49999	48792	0.00	-	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	48791	48640	0.00	-	0	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	intron	48639	47271	0.00	-	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	47270	47246	0.00	-	1	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	intron	47245	46694	0.00	-	.	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
KE993701.1:subseq(1238345,100152)	GeneWise	cds	46693	46631	0.00	-	0	KE993701.1:subseq(1238345,100152)-genewise-prediction-1
//
