
genewise output
Score 19.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002930_2.0   15 RGCERGGRRRR                                       
                     RGC  GGR RR                                       
                     RGCRDGGRGRR                                       
KE993773.1:subs32807 cgtcgggcgac                                       
                     ggggagggggg                                       
                     acttttatcgc                                       


//
>KE993773.1:subseq(108049,100113).pep
RGCRDGGRGRR
//
>KE993773.1:subseq(108049,100113).[32807:32839].sp
CGAGGCTGTCGTGATGGTGGACGTGGCAGGCGC
//
KE993773.1:subseq(108049,100113)	GeneWise	match	32807	32839	19.74	+	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	32807	32839	0.00	+	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
//

genewise output
Score 758.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002930_2.0   37 LSRTQVCGILREELFQGDAFHQSDTHIFIIMGAS                
                     LS+  V  +LR+EL   + FH+ +TH+F+++GAS                
                     LSQADVMDLLRQELRDDEDFHEKETHFFVVLGAS                
KE993773.1:sub-67135 ctcgggagccccgccggggtcgagacttggcggt                
                     tcacattattgaatgaaaataaaacatttttgcc                
                     gcagcggccggggtaccgtccgggattctcgccg                


SPP00002930_2.0   71                        GDLAKKKIYPTI               
                                            GDLAKKKIYPT+               
                                            GDLAKKKIYPTL               
KE993773.1:sub-67033 GTTCGTT  Intron 1   CAGggcgaaaatcac               
                     <0-----[67033:57557]-0>gatcaaatacct               
                                            atgcggactgac               


SPP00002930_2.0   83                           WLFRDGLLPENTFIVGYARSRLT 
                                               WLFRDGLLP +T+++GYARS +T 
                                W:W[tgg]       WLFRDGLLPSDTYVIGYARSAIT 
KE993773.1:sub-57520 TGGTGAGTG  Intron 2   AAGGtctaggcccagatgagtgctgaa 
                       <2-----[57518:50115]-2> gttgagttcgacattgacgcctc 
                                               ggcgtggggccgcgcgcgccccc 


SPP00002930_2.0  107 VADIRKQSEPFFK                       ATPEEKLKLEDFF 
                     + DIR++  PF+K                           E+  LE FF 
                     MKDIRERCLPFLK                       VRAGEEEALEKFF 
KE993773.1:sub-50044 aagacgctcctcaGTGACGA  Intron 3   CAGgcggggggcgatt 
                     taatgaggtctta<0-----[50005:47035]-0>tgcgaaactaatt 
                     ggcccgccgccgg                       gagcggacgggcc 


SPP00002930_2.0  133 ARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTVYEAVT 
                      RN YV+GQYD    +++L + ++ L  G  +NRLFYLALPP+V+E+VT 
                     TRNIYVSGQYDVRQPFEKLAAQLDTLAHGRLSNRLFYLALPPSVFESVT 
KE993773.1:sub-46995 acaatgtgctggccctgacggccgacgcgcctaccttcgcccagtgtga 
                     cgatatcgaaatgactaatccatactcaggtcagttatctccgttactc 
                     cccccgacgccgagccggcccggcgcccccctccccccgggccccgcca 


SPP00002930_2.0  182 KNIHESCMSQ                          GWNRIIVEKPFGR 
                      N+  +CMS                           GWNR+IVEKPFGR 
                     SNVRSTCMST           I:T[acc]       GWNRVIVEKPFGR 
KE993773.1:sub-46848 tagctataaaACGTGAGTG  Intron 4   CAGCgtacgaggactgc 
                     catgccgtgc  <2-----[46816:46030]-2> ggagtttaactgg 
                     ccgccccgcc                          cgcggcggggtcc 


SPP00002930_2.0  206 DLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVL           
                     DLQSSD+LS H++ LF E+QIYRIDHYLGKEMVQNLMVL           
                     DLQSSDKLSQHLAQLFSEEQIYRIDHYLGKEMVQNLMVL           
KE993773.1:sub-45989 gccatgactcccgccttggcatcagctcgagagcacagc           
                     atagcaatcaatcattcaaatagtaaatgaattaatttt           
                     cggcgcgggacggggccgggcccccccgcgggggccggc           


SPP00002930_2.0  245                           FANRIFGPIWNRDNIACVILTFK 
                                               F NRIFGPIWNRDNIA V++TFK 
                                R:R[agg]       FGNRIFGPIWNRDNIASVVITFK 
KE993773.1:sub-45872 AGGTGAGCG  Intron 5   CAGGtgacatgcatacgaagtggaata 
                       <2-----[45870:44735]-2> tgagttgctgagaatcctttcta 
                                               tgcgcctttgcgcccggggcccg 


SPP00002930_2.0  269 EPFGTEGRGGYFDEFGII                          DVMQN 
                     EPFGTEGRGGYFDEFGII                          DVMQN 
                     EPFGTEGRGGYFDEFGII           R:R[agg]       DVMQN 
KE993773.1:sub-44664 gctgaggcggttggtgaaAGGTGGCTA  Intron 6   CAGGggaca 
                     actgcaggggataatgtt  <2-----[44608:43908]-2> attaa 
                     ggccaggtcacccgcccc                          cgggc 


SPP00002930_2.0  293 HLLQMLCLVAMEKPASTNSDDVRDEK                        
                     HLLQMLCLVAMEKP ST+SDDVR+EK                        
                     HLLQMLCLVAMEKPTSTSSDDVRNEK                        
KE993773.1:sub-43891 ccccactcggagacataatgggcagaGTGGGTC  Intron 7   CAG 
                     attattgttctaaccccgcaatgaaa<0-----[43813:43532]-0> 
                     cggaggcggcggaggcgcgcctccgg                        


SPP00002930_2.0  319 VKVLKCISEVQANNVVLGQYVGNPDGEGEATKG-YLDDPTVPRGSTTAT 
                     VKVLKC+ E+   +VVLGQYV  P   G   +G YLDDPTVP GS T T 
                     VKVLKCVPEILLEDVVLGQYVARPGSTGPGEEGGYLDDPTVPAGSVTPT 
KE993773.1:sub-43531 gagcatgcgatcggggcgctggccgaagcgggggttggcagcggtgaca 
                     tattagtcatttaatttgaatcgcggcgcgaaggataacctccgctccc 
                     gggcgcgggcgggcgggtgcgtgtccgtccggcccgcccggcgcccccc 


SPP00002930_2.0  367 FAAVVLYVENERWD                          VPFILRCGK 
                     FA+VVLYV+NERWD                          VPF+LRCGK 
                     FASVVLYVQNERWD          G:G[ggc]        VPFVLRCGK 
KE993773.1:sub-43384 tgtggctgcagctgGGTGAGCG  Intron 8   CAGGCgctgcctga 
                     tcctttataaagga <1-----[43341:42743]-1>  tctttggga 
                     cccggccggcgggc                          tgcggcccg 


SPP00002930_2.0  391 ALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKP 
                     ALNERKAE+RLQF D  GDIF +QCKRNELVIRVQPNEAVY KMMTKKP 
                     ALNERKAEMRLQFRDAPGDIFQRQCKRNELVIRVQPNEAVYMKMMTKKP 
KE993773.1:sub-42713 gcagcaggaccctcggcggatccctacagcgacgccagggtaaaaaaac 
                     ctaagacatgtatgaccgattagagagaatttgtacaactatattcaac 
                     tgcgcgcgggggcccggccccgagcgccgggccggccaaccggggcggc 


SPP00002930_2.0  440 GMFFNPEESELDLTYGNRYK                       NVKLPD 
                     GM F P+ESELDLTY +RY+                       +VKLPD 
                     GMHFAPDESELDLTYSSRYR                       DVKLPD 
KE993773.1:sub-42566 gactgcggtgcgcataactcGTGAGTG  Intron 9   CAGggaccg 
                     gtatccaacatatcagggag<0-----[42506:41868]-0>atatca 
                     cgcctccgggtcctcccccc                       cgagct 


SPP00002930_2.0  466 AYERLILDVFCGSQMHFVR                          DELR 
                     AYERLILDVFCGSQ+HFVR                          DEL+ 
                     AYERLILDVFCGSQIHFVR           S:S[agc]       DELK 
KE993773.1:sub-41849 gtgccacggttgacactgcAGGTAACGC  Intron 10  CAGCggca 
                     caagtttattgggatattg  <2-----[41790:41632]-2> aata 
                     tcgcccacgccgtgcctgc                          cgga 


SPP00002930_2.0  490 EAWRIFTPLLHQIELEKPKPIPYIYG                        
                     EAWRIFTPLL +IE EK KPIPY YG                        
                     EAWRIFTPLLDKIEKEKIKPIPYDYG           S:S[agc]     
KE993773.1:sub-41618 ggtaatacccgaagagaaacactgtgAGGTGCGTG  Intron 11    
                     acggttccttaataaaatactcaaag  <2-----[41538:40969]  
                     agggacttggcgtggggcactttccc                        


SPP00002930_2.0  516     RGPTEADELMKRVGFQYEGTYKWVNPHKL                 
                         RGP EAD+L+ RVGF+YEGTYKWV+PHKL                 
                         RGPKEADDLLSRVGFRYEGTYKWVSPHKL                 
KE993773.1:sub-40971 CAGCcgcaggggccaaggtctggatatgaccac                 
                     -2> ggcaacaattggtgtgaagcaagtgcaat                 
                         tacgggccgccaggtccgaccggcttcgc                 


//
Making a W in phase 2 intron
Making a T in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a S in phase 2 intron
>KE993773.1:subseq(108049,100113).pep
LSQADVMDLLRQELRDDEDFHEKETHFFVVLGASGDLAKKKIYPTLWWLFRDGLLPSDTY
VIGYARSAITMKDIRERCLPFLKVRAGEEEALEKFFTRNIYVSGQYDVRQPFEKLAAQLD
TLAHGRLSNRLFYLALPPSVFESVTSNVRSTCMSTTGWNRVIVEKPFGRDLQSSDKLSQH
LAQLFSEEQIYRIDHYLGKEMVQNLMVLRFGNRIFGPIWNRDNIASVVITFKEPFGTEGR
GGYFDEFGIIRDVMQNHLLQMLCLVAMEKPTSTSSDDVRNEKVKVLKCVPEILLEDVVLG
QYVARPGSTGPGEEGGYLDDPTVPAGSVTPTFASVVLYVQNERWDGVPFVLRCGKALNER
KAEMRLQFRDAPGDIFQRQCKRNELVIRVQPNEAVYMKMMTKKPGMHFAPDESELDLTYS
SRYRDVKLPDAYERLILDVFCGSQIHFVRSDELKEAWRIFTPLLDKIEKEKIKPIPYDYG
SRGPKEADDLLSRVGFRYEGTYKWVSPHKL
//
>KE993773.1:subseq(108049,100113).[67135:40879].sp
CTGTCCCAAGCGGACGTGATGGACCTCCTGCGGCAGGAGCTTCGAGACGACGAGGATTTC
CACGAGAAGGAGACACATTTTTTCGTTGTCCTGGGCGCCTCGGGAGATCTGGCCAAGAAG
AAAATCTATCCGACACTCTGGTGGCTGTTCAGGGATGGGCTGCTGCCGAGCGACACGTAC
GTGATCGGGTACGCGCGCTCCGCCATCACCATGAAGGACATCCGCGAGCGCTGCCTGCCC
TTCCTGAAGGTGCGAGCGGGCGAGGAGGAAGCCCTGGAGAAGTTCTTCACCCGCAACATC
TACGTGTCAGGCCAGTACGACGTGCGACAGCCCTTCGAGAAGCTCGCCGCCCAGCTGGAC
ACGCTCGCCCACGGCCGCCTCTCTAACCGCCTCTTCTACCTCGCGCTGCCGCCCAGCGTC
TTCGAGTCCGTCACATCCAACGTGCGCTCCACCTGCATGAGCACCACCGGCTGGAACCGG
GTGATCGTGGAGAAGCCGTTTGGCCGCGACCTGCAGAGCTCGGACAAGCTGTCGCAACAC
CTGGCGCAGCTGTTCTCCGAGGAGCAGATCTACCGCATCGACCACTACCTGGGCAAGGAG
ATGGTGCAGAACCTCATGGTGCTCAGGTTTGGGAACCGGATCTTCGGTCCTATTTGGAAC
CGGGACAACATCGCGTCGGTGGTGATCACCTTCAAGGAGCCGTTCGGCACAGAGGGGCGT
GGCGGATACTTCGACGAGTTCGGCATCATCAGGGACGTGATGCAGAACCACCTGCTGCAA
ATGCTGTGCCTGGTGGCCATGGAGAAACCGACGTCCACGAGCTCGGACGACGTTCGCAAC
GAGAAGGTGAAGGTGCTCAAGTGCGTGCCGGAGATCTTGCTGGAGGACGTGGTGCTGGGT
CAGTACGTGGCTCGGCCTGGCAGCACGGGTCCCGGCGAGGAGGGCGGCTACTTGGACGAC
CCCACGGTGCCCGCGGGCTCCGTCACCCCCACCTTCGCCTCCGTGGTGCTCTACGTGCAG
AACGAGCGGTGGGACGGCGTTCCGTTCGTGCTGCGCTGCGGCAAGGCTCTGAACGAGCGC
AAGGCCGAGATGCGGCTGCAGTTCCGCGACGCGCCGGGCGACATCTTCCAGCGACAGTGC
AAGCGCAACGAGCTGGTGATCCGCGTGCAGCCCAACGAAGCAGTCTACATGAAGATGATG
ACCAAGAAGCCCGGCATGCACTTCGCTCCCGACGAGTCGGAGCTTGACCTCACTTACAGC
AGCCGCTACCGCGACGTGAAACTGCCCGATGCTTACGAGCGCCTCATCCTAGACGTGTTC
TGCGGGAGTCAGATCCACTTTGTGCGCAGCGACGAGCTGAAAGAAGCGTGGAGGATATTC
ACTCCTCTGCTGGACAAGATTGAGAAGGAGAAGATCAAACCCATTCCTTATGACTACGGC
AGCCGTGGACCCAAGGAGGCGGACGACCTGCTCAGCAGAGTGGGGTTTCGCTACGAGGGA
ACCTACAAGTGGGTCAGTCCTCACAAGCTC
//
KE993773.1:subseq(108049,100113)	GeneWise	match	67135	40881	758.66	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	67135	67034	0.00	-	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	67033	57557	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	57556	57519	0.00	-	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	57518	50115	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	50114	50006	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	50005	47035	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	47034	46817	0.00	-	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	46816	46030	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	46029	45871	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	45870	44735	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	44734	44609	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	44608	43908	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	43907	43814	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	43813	43532	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	43531	43342	0.00	-	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	43341	42743	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	42742	42507	0.00	-	2	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	42506	41868	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	41867	41791	0.00	-	0	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	41790	41632	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	41631	41539	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	intron	41538	40969	0.00	-	.	KE993773.1:subseq(108049,100113)-genewise-prediction-1
KE993773.1:subseq(108049,100113)	GeneWise	cds	40968	40881	0.00	-	1	KE993773.1:subseq(108049,100113)-genewise-prediction-1
//
