C4 Alignment:
------------
Query: SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) # Human (Homo sapiens)
Target: gi|397461694|gb|JH733807.1|:subseq(0,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-4487, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2302
Query range: 46 -> 698
Target range: 91172 -> 41281
47 : GlyArgAlaArgSerGluSerGluThrLeuGluArg >>>> Target Intron 1 > : 59
|||!!! !!.! ! !|||!!:|||! !:!!!:! 13684 bp
GlySerArgHisHisProSerAspThrTrpLysGln++
91172 : GGAAGCCGACACCATCCATCAGACACTTGGAAACAGgt...................... : 91134
60 : >>> SerProProGlnSerProGlyProGlyLysAlaGlyAspAlaProAsnArgArgS : 77
|||||| !:!!..!|||! !|||||| !.!|||! ! !|||..! !|||
++SerProAsnLysAspProAspProGlyGlyGlyGlyGlyTyrProGlyLeuArgV
91133 : ...agAGCCCTAACAAAGACCCAGACCCGGGTGGTGGAGGCGGTTACCCTGGCTTGCGGG : 77398
78 : erGlyHisValArgGlyAlaArgValLeuSerProProGly >>>> Target Intro : 91
! ! ! !!:!|||!.! !! !:!!! ! !!||| ! 2799 bp
alThrSerArgLysGlyValGlyGlnMet***AlaProGln+-
77397 : TGACCTCCAGGAAGGGGGTTGGCCAGATGTAGGCACCCCAGgg................. : 77354
92 : n 2 >>>> ArgArgAlaArgLeuSer >>>> Target Intron 3 >>>> Ser : 97
|||..! ! !:!!.!! 3291 bp !!
++ArgGluLysAlaValGly++ -+Pro
77353 : ........agAGGGAGAAGGCAGTGGGGgt.........................cgCCG : 71248
98 : ProGlyProSerArgSerSerGluAlaArgGluGluLeuArgArgHisLeuValGlyLeu : 117
||||||! !!!!||| ! !!!!: !!!!:! !|||!:!! !!.!:!! !..!|||
ProGlyGlnThrArgLeuProAsp---TrpAspGlyLeuLysLeuArgValArgSerLeu
71247 : CCGGGACAGACGCGGCTACCGGAC---TGGGACGGGCTGAAGCTGCGCGTGCGGTCGCTG : 71191
118 : IleGluArgSerArgValValIlePheSerLysSerTyrCysProHisSerThrArg > : 137
:!!! ! !||||||:!!:!!|||||||||||||||||||||:!!!!! !|||
ValGlySerHisArgValLeuValPheSerLysSerTyrCysProTyrCysLeuArg++
71190 : GTCGGTTCGCACCGCGTCCTGGTCTTCAGCAAGAGCTACTGCCCCTACTGCCTGCGGgt. : 71129
138 : >>> Target Intron 4 >>>> ValLysGluLeuPheSerSerLeuGlyValGluC : 148
12143 bp ||||||||||||||| !!|||:!!|||:!!|||!
++ValLysGluLeuPheArgSerMetGlyLeuGluT
71128 : ........................agGTGAAAGAACTTTTCCGTTCTATGGGACTAGAGT : 58955
149 : ysAsnValLeuGluLeuAspGlnVal{A} >>>> Target Intron 5 >>>> {s : 157
! !!!.!|||||||||||| !:!!{|} 1585 bp {|
yrTyrAlaLeuGluLeuAspValIle{A}++ ++{s
58954 : ATTATGCCTTGGAACTTGATGTAATT{G}gt.........................ag{A : 57342
158 : p}AspGlyAlaArgValGlnGluValLeuSerGluIleThrAsnGlnLysThrValProA : 177
|}|||||| !!!!!:!!|||:!!||||||! !|||!!:|||||||||!:!||||||||||
p}AspGlyProSerIleGlnGlnValLeuMetGluMetThrAsnGlnArgThrValProA
57341 : T}GATGGACCCAGTATTCAGCAAGTGTTAATGGAGATGACTAACCAAAGGACTGTGCCCA : 57283
178 : snIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln >>>> Tar : 194
||:!!||||||||| !..!|||||||||||||||||| !|||.!!|||
snValPheValAsnGlyThrHisValGlyGlyCysAspAlaThrLeuGln++
57282 : ATGTATTTGTGAACGGGACACATGTAGGTGGATGCGATGCAACTCTTCAGgt........ : 57230
195 : get Intron 6 >>>> AlaTyrGlnSerGlyLeuLeuGlnLysLeuLeu<-><-><- : 205
2112 bp |||||||||!:!|||! !|||||||||||||||
++AlaTyrGlnAsnGlySerLeuGlnLysLeuLeuGlySerGl
57229 : .................agGCTTACCAGAACGGCTCACTGCAGAAGCTTCTCGGGTCTGG : 55081
206 : >GlnGluAspLeuAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLe : 224
!!!:! ! !!||||||||||||||||||:!!|||||||||||||||||||||||
yThrAspValLysProTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLe
55080 : AACGGATGTAAAGCCATATGATTATGATCTCATTGTTATTGGTGGTGGCTCTGGTGGACT : 55021
225 : uSerCysAlaLys >>>> Target Intron 7 >>>> GluAlaAlaIleLeuGly : 234
|:!!|||:!!||| 1362 bp |||||||||! !||||||
uAlaCysSerLys++ ++GluAlaAlaThrLeuGly
55020 : TGCTTGTTCAAAGgt.........................agGAAGCTGCTACCTTAGGA : 53629
235 : LysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G} > : 253
|||||||||||||||||||||!:!|||||||||!!!|||..!||||||||||||{|}
LysLysValMetValLeuAspTyrValValProThrProSerGlyThrSerTrp{G}++
53628 : AAAAAAGTCATGGTGCTAGATTATGTTGTACCAACACCTTCGGGTACCTCCTGG{G}gt. : 53569
254 : >>> Target Intron 8 >>>> {ly}LeuGlyGlyThrCysValAsnValGlyCys : 263
1170 bp {||}||||||||||||||||||||||||||||||
++{ly}LeuGlyGlyThrCysValAsnValGlyCys
53568 : ........................ag{GA}CTTGGTGGTACTTGTGTCAACGTAGGCTGC : 52372
264 : IleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCysAspSerArg : 283
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
IleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuLysAspSerArg
52371 : ATTCCTAAGAAACTGATGCATCAAGCTGCGCTTTTGGGACAGGCCCTTAAGGATTCACGT : 52312
284 : LysPheGlyTrpGluTyrAsnGlnGln{V} >>>> Target Intron 9 >>>> { : 293
||||||||||||:!!|||:!!:!!|||{|} 1511 bp {
LysPheGlyTrpGlnTyrAspGluGln{V}++ ++{
52311 : AAATTTGGCTGGCAGTATGATGAGCAA{G}gt.........................ag{ : 50770
294 : al}ArgHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisIleSerSerLeuAsn : 312
||}!:!||||||||||||||||||..!:!!||||||||||||:!!|||.!!|||||||||
al}LysHisAsnTrpGluThrMetValGluAlaIleGlnAsnTyrIleGlySerLeuAsn
50769 : TT}AAACACAACTGGGAAACCATGGTAGAAGCAATTCAGAACTATATAGGCTCTCTAAAC : 50714
313 : TrpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyGlu : 332
||||||||||||:!!|||||||||||||||.!!|||.!!|||:!!|||:!!|||!.!|||
TrpGlyTyrArgValSerLeuArgGluLysThrValThrTyrLeuAsnAlaTyrAlaGlu
50713 : TGGGGCTACAGGGTGTCTTTAAGAGAGAAAACTGTCACATACCTCAACGCGTACGCAGAA : 50654
333 : PheValGluHisHisLysIleLys >>>> Target Intron 10 >>>> AlaThr : 342
|||:!!|||! ||||||:!!||| 2659 bp ||||||
PheIleGluProHisLysValLys++ ++AlaThr
50653 : TTTATTGAACCACATAAAGTAAAGgt..........................agGCAACA : 47965
343 : AsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGlu : 362
|||!:!||||||||||||||||||:!!||||||! !::!||||||:!!||||||||||||
AsnArgLysGlyGlnGluThrTyrHisThrAlaGluArgPheValLeuAlaThrGlyGlu
47964 : AATAGGAAAGGGCAAGAAACCTATCATACAGCAGAAAGATTTGTCCTAGCCACAGGGGAG : 47905
363 : ArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se} >>>> T : 379
|||||||||||||||||||||! ||||||||||||||||||||||||{||}
ArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCysIleThr{Se}++
47904 : AGGCCCCGATATTTGGGTATTCCTGGAGATAAAGAATACTGTATTACA{AG}gt...... : 47850
380 : arget Intron 11 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLy : 391
122 bp {|}|||||||||!! |||||||||||||||||||||||
++{r}AspAspLeuUnkSerLeuProTyrCysProGlyLy
47849 : ....................ag{T}GATGATCTCTTNTCCCTGCCTTACTGCCCTGGCAA : 47696
392 : sThrLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyPh : 411
||||||||||||||||||||||!! |||||||||||||||||||||||||||||||||.!
sThrLeuValValGlyAlaSerUnkValAlaLeuGluCysAlaGlyPheLeuAlaGlyIl
47695 : AACTCTTGTTGTGGGAGCGTCCTANGTGGCTCTGGAGTGTGCAGGGTTTCTTGCNGGCAT : 47636
412 : eGlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMe : 431
!||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||
eGlyLeuAspValSerValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMe
47635 : TGGTTTGGATGTGTCGGTTATGGTGCGCTCCATCCTTCTTCGAGGTTTTGATCAAGAAAT : 47576
432 : tAlaGluLysValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLysPheIl : 451
|||||||!:!:!!|||:!!:!!|||||| |||||||||||||||:!!|||!:!|||:!
tAlaGluArgIleGlyAlaHisMetGluThrHisGlyValLysPheIleArgArgPheVa
47575 : GGCAGAAAGAATAGGTGCTCATATGGAAACCCATGGTGTGAAATTCATCAGGAGATTTGT : 47516
452 : eProValMet >>>> Target Intron 12 >>>> ValGlnGlnLeuGluLysGl : 461
!|||:!!..! 265 bp :!!:!!::!|||||| ! ||
lProIleGln+- ++IleGluArgLeuGluAspGl
47515 : ACCTATTCAGgc..........................agATTGAAAGGCTGGAAGATGG : 47221
462 : ySerProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluThrIleGluGl : 481
|! !||||||!:!|||||||||:!!|||!:!||||||||||||:!!!!:! !.!!|||||
yMetProGlyArgLeuLysValValAlaArgSerThrGluGlySerAspIlePheGluGl
47220 : CATGCCTGGAAGACTGAAAGTGGTAGCAAGGTCTACTGAGGGATCAGACATTTTTGAAGG : 47161
482 : yValTyrAsnThr >>>> Target Intron 13 >>>> ValLeuLeuAlaIleGl : 491
|! !||||||||| 493 bp ||||||:!!||||||||
yGluTyrAsnThr++ ++ValLeuIleAlaIleGl
47160 : AGAGTATAACACTgt..........................agGTTTTGATAGCAATTGG : 46638
492 : yArgAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{L : 511
|||||||:!!|||||||||!!.|||||||||!!:||||||||||||!:!|||||||||{:
yArgAspAlaCysThrArgAsnIleGlyLeuAspLysIleGlyValArgIleAsnGlu{G
46637 : CCGTGATGCATGCACCAGAAACATTGGTTTGGATAAAATCGGGGTCAGAATCAATGAA{G : 46578
512 : y} >>>> Target Intron 14 >>>> {s}SerGlyLysIleProValAsnAspV : 520
!} 1662 bp {!}!:!|||||||||||||||!:!|||!
l}++ ++{u}AsnGlyLysIleProValSerAspG
46577 : A}gt..........................ag{G}AATGGAAAAATACCAGTAAGTGATG : 44889
521 : alGluGlnThrAsnValProTyrValTyrAlaValGlyAspIleLeuGluAspLysProG : 540
!||||||||||||||||||||||||||||||:!!||||||||||||!!:! |||! !|
luGluGlnThrAsnValProTyrValTyrAlaIleGlyAspIleLeuAspGlyLysLeuG
44888 : AAGAACAAACCAATGTGCCTTATGTCTATGCTATTGGAGATATCTTGGATGGAAAACTTG : 44829
541 : luLeuThrProValAlaIleGlnSerGlyLysLeuLeuAlaGlnArgLeuPheGlyAlaS : 560
|||||||||||||||||||||||:!!|||!:!|||||||||!::||||||!:!!.!!.!|
luLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaArgArgLeuTyrAlaGlyS
44828 : AACTGACCCCAGTTGCCATTCAGGCAGGCAGACTACTAGCTCGCAGACTTTATGCTGGTA : 44769
561 : erLeuGluLys >>>> Target Intron 15 >>>> CysAspTyrIleAsnValP : 570
||! ! !||| 261 bp |||||||||:!!|||||||
erSerIleLys++ ++CysAspTyrValAsnValP
44768 : GTTCTATAAAGgt..........................agTGTGATTATGTCAATGTAC : 44478
571 : roThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaI : 590
|||||||||||||||||||||||||||||||||||||||||||| !!|||||||||||||
roThrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuProGluGluLysAlaI
44477 : CAACTACAGTTTTTACTCCTTTGGAATATGGCTGTTGTGGACTGCCAGAAGAGAAAGCAA : 44418
591 : leGluValTyrLysLysGluAsnLeuGlu >>>> Target Intron 16 >>>> I : 600
||:!!! !||| !:!!.!.||||||||| 1308 bp :
leLysGluTyrGlyGluHisAsnLeuGlu++ ++V
44417 : TTAAAGAATATGGAGAGCATAACTTGGAGgt..........................agG : 43080
601 : leTyrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrC : 620
!!|||||||||||||||||||||||||||||||||||| !!..!|||!!:||||||||||
alTyrHisThrLeuPheTrpProLeuGluTrpThrValProAsnArgAspAsnAsnThrC
43079 : TTTATCACACTTTGTTCTGGCCACTTGAGTGGACAGTACCCAACAGAGACAACAATACTT : 43020
621 : ysTyrAlaLysIleIleCysAsnLysPheAspHis >>>> Target Intron 17 > : 632
||||||||||||||||||||||||||.!!! :!! 1196 bp
ysTyrAlaLysIleIleCysAsnLysLeuAlaAsn++
43019 : GTTATGCAAAGATTATATGCAACAAACTTGCAAATgt....................... : 42982
633 : >>> AspArgValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnG : 650
:!!||||||||||||||||||:!!|||||||||||||||||||||:!!|||||||
++AsnArgValIleGlyPheHisValLeuGlyProAsnAlaGlyGluIleThrGlnG
42981 : ...agAACCGTGTCATTGGATTTCATGTTCTTGGCCCCAATGCTGGTGAAATAACTCAAG : 41734
651 : lyPheAlaAlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyI : 670
||||||||||||||!!:||||||||||||||||||:!!||||||:!!!!:||||||||||
lyPheAlaAlaAlaIleLysCysGlyLeuThrLysGluLeuLeuAsnGluThrIleGlyI
41733 : GCTTTGCTGCAGCAATAAAATGTGGTCTGACAAAAGAACTGCTTAATGAAACGATTGGTA : 41674
671 : leHisProThrCysGlyGlu >>>> Target Intron 18 >>>> ValPheThrT : 680
||||||||||||||!.!||| 306 bp ||||||||||
leHisProThrCysAlaGlu++ ++ValPheThrT
41673 : TACATCCAACATGTGCAGAGgt..........................agGTGTTCACTA : 41338
681 : hrLeuGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCysUnkGly : 698
||:!!.!.||||||||||||||||||! !!!:|||||||||!..|||||| |||
hrMetAsnIleThrLysSerSerGlyGlnGluIleThrGlnSerGlyCys***Gly
41337 : CTATGAATATTACAAAATCTTCCGGACAAGAGATTACTCAGAGTGGCTGCTGAGGT : 41282
vulgar: SPP00000141_2.0 46 698 . gi|397461694|gb|JH733807.1|:subseq(0,100000) 91172 41281 - 2302 M 12 36 5 0 2 I 0 13680 3 0 2 M 32 96 5 0 2 I 0 2795 3 0 2 M 6 18 5 0 2 I 0 3287 3 0 2 M 9 27 G 1 0 M 30 90 5 0 2 I 0 12139 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1581 3 0 2 S 1 2 M 36 108 5 0 2 I 0 2108 3 0 2 M 11 33 G 0 9 M 24 72 5 0 2 I 0 1358 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1166 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 1507 3 0 2 S 1 2 M 47 141 5 0 2 I 0 2655 3 0 2 M 38 114 S 0 2 5 0 2 I 0 118 3 0 2 S 1 1 M 75 225 5 0 2 I 0 261 3 0 2 M 31 93 5 0 2 I 0 489 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1658 3 0 2 S 1 1 M 52 156 5 0 2 I 0 257 3 0 2 M 36 108 5 0 2 I 0 1304 3 0 2 M 32 96 5 0 2 I 0 1192 3 0 2 M 45 135 5 0 2 I 0 302 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local gene 41282 91172 2302 - . gene_id 1 ; sequence SPP00000141_2.0 ; gene_orientation +
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 91137 91172 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 91137 91172 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 91135 91136 . - . intron_id 1 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 77453 91136 . - . intron_id 1
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 77453 77454 . - . intron_id 0 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 77357 77452 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 77357 77452 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 77355 77356 . - . intron_id 2 ; splice_site "GG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 74558 77356 . - . intron_id 2
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 74558 74559 . - . intron_id 1 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 74540 74557 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 74540 74557 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 74538 74539 . - . intron_id 3 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 71249 74539 . - . intron_id 3
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 71249 71250 . - . intron_id 2 ; splice_site "CG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 71132 71248 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 71132 71248 . - . insertions 0 ; deletions 1
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 71130 71131 . - . intron_id 4 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 58989 71131 . - . intron_id 4
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 58989 58990 . - . intron_id 3 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 58928 58988 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 58928 58988 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 58926 58927 . - . intron_id 5 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 57343 58927 . - . intron_id 5
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 57343 57344 . - . intron_id 4 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 57233 57342 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 57233 57342 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 57231 57232 . - . intron_id 6 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 55121 57232 . - . intron_id 6
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 55121 55122 . - . intron_id 5 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 55007 55120 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 55007 55120 . - . insertions 9 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 55005 55006 . - . intron_id 7 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 53645 55006 . - . intron_id 7
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 53645 53646 . - . intron_id 6 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 53572 53644 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 53572 53644 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 53570 53571 . - . intron_id 8 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 52402 53571 . - . intron_id 8
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 52402 52403 . - . intron_id 7 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 52282 52401 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 52282 52401 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 52280 52281 . - . intron_id 9 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 50771 52281 . - . intron_id 9
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 50771 50772 . - . intron_id 8 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 50628 50770 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 50628 50770 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 50626 50627 . - . intron_id 10 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47969 50627 . - . intron_id 10
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47969 47970 . - . intron_id 9 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47853 47968 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47853 47968 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47851 47852 . - . intron_id 11 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47731 47852 . - . intron_id 11
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47731 47732 . - . intron_id 10 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47505 47730 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47505 47730 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47503 47504 . - . intron_id 12 ; splice_site "GC"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47240 47504 . - . intron_id 12
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47240 47241 . - . intron_id 11 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47147 47239 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47147 47239 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47145 47146 . - . intron_id 13 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 46654 47146 . - . intron_id 13
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 46654 46655 . - . intron_id 12 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 46577 46653 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 46577 46653 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 46575 46576 . - . intron_id 14 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 44915 46576 . - . intron_id 14
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 44915 44916 . - . intron_id 13 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 44758 44914 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 44758 44914 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 44756 44757 . - . intron_id 15 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 44497 44757 . - . intron_id 15
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 44497 44498 . - . intron_id 14 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 44389 44496 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 44389 44496 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 44387 44388 . - . intron_id 16 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 43081 44388 . - . intron_id 16
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 43081 43082 . - . intron_id 15 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 42985 43080 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 42985 43080 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 42983 42984 . - . intron_id 17 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 41789 42984 . - . intron_id 17
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 41789 41790 . - . intron_id 16 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 41654 41788 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 41654 41788 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 41652 41653 . - . intron_id 18 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 41348 41653 . - . intron_id 18
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 41348 41349 . - . intron_id 17 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 41282 41347 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 41282 41347 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local similarity 41282 91172 2302 - . alignment_id 1 ; Query SPP00000141_2.0 ; Align 91173 47 36 ; Align 77453 59 96 ; Align 74558 91 18 ; Align 71249 97 27 ; Align 71222 107 90 ; Align 58989 137 60 ; Align 57341 158 108 ; Align 55121 194 33 ; Align 55079 205 72 ; Align 53645 229 72 ; Align 52400 254 117 ; Align 50769 294 141 ; Align 47969 341 114 ; Align 47730 380 225 ; Align 47240 455 93 ; Align 46654 486 75 ; Align 44914 512 156 ; Align 44497 564 108 ; Align 43081 600 96 ; Align 41789 632 135 ; Align 41348 677 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis