TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) #
Human (Homo sapiens)
(698 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397461694|gb|JH733807.1| Alligator mississippiensis unplaced ... 134 3e-45
gi|397458791|gb|JH736710.1| Alligator mississippiensis unplaced ... 142 6e-32
gi|397459659|gb|JH735842.1| Alligator mississippiensis unplaced ... 89 7e-16
gi|397461104|gb|JH734397.1| Alligator mississippiensis unplaced ... 51 2e-04
gi|397463495|gb|JH732006.1| Alligator mississippiensis unplaced ... 47 0.003
gi|397463537|gb|JH731964.1| Alligator mississippiensis unplaced ... 42 0.14
gi|397458151|gb|JH737350.1| Alligator mississippiensis unplaced ... 40 0.40
gi|397460178|gb|JH735323.1| Alligator mississippiensis unplaced ... 40 0.52
gi|397463475|gb|JH732026.1| Alligator mississippiensis unplaced ... 39 0.68
gi|397461345|gb|JH734156.1| Alligator mississippiensis unplaced ... 39 1.2
gi|397455937|gb|JH739563.1| Alligator mississippiensis unplaced ... 38 2.0
gi|397463942|gb|JH731559.1| Alligator mississippiensis unplaced ... 38 2.0
gi|397463600|gb|JH731901.1| Alligator mississippiensis unplaced ... 37 2.6
gi|397461995|gb|JH733506.1| Alligator mississippiensis unplaced ... 37 3.4
gi|397460114|gb|JH735387.1| Alligator mississippiensis unplaced ... 36 5.7
gi|397460400|gb|JH735101.1| Alligator mississippiensis unplaced ... 36 5.7
gi|397462789|gb|JH732712.1| Alligator mississippiensis unplaced ... 36 5.7
gi|397463418|gb|JH732083.1| Alligator mississippiensis unplaced ... 36 5.7
gi|397458516|gb|JH736985.1| Alligator mississippiensis unplaced ... 36 7.5
gi|397459189|gb|JH736312.1| Alligator mississippiensis unplaced ... 36 7.5
gi|397458124|gb|JH737377.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397460449|gb|JH735052.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397460807|gb|JH734694.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397461058|gb|JH734443.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397462659|gb|JH732842.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397463565|gb|JH731936.1| Alligator mississippiensis unplaced ... 35 9.8
gi|397464141|gb|JH731360.1| Alligator mississippiensis unplaced ... 35 9.8
>gi|397461694|gb|JH733807.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4487, whole genome shotgun sequence
Length = 316803
Score = 134 bits (337), Expect(2) = 3e-45
Identities = 62/79 (78%), Positives = 73/79 (92%)
Frame = -2
Query: 375 YCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEK 434
+ + SDDL SLPYCPGKTLVVGAS VALECAGFLAG GLDV+VMVRSILLRGFDQEMAE+
Sbjct: 47744 FFLFSDDLXSLPYCPGKTLVVGASXVALECAGFLAGIGLDVSVMVRSILLRGFDQEMAER 47565
Query: 435 VGSYMEQHGVKFLRKFIPV 453
+G++ME HGVKF+R+F+P+
Sbjct: 47564 IGAHMETHGVKFIRRFVPI 47508
Score = 94.0 bits (232), Expect = 2e-17
Identities = 43/67 (64%), Positives = 54/67 (80%)
Frame = -3
Query: 629 FDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSG 688
F +RVIGFH+LGPNAGE+TQGFAAA+KCGLTK+LL++TIGIHPTC EV LE+ +
Sbjct: 41797 FFKNRVIGFHVLGPNAGEITQGFAAAIKCGLTKELLNETIGIHPTCAEVRGKLELQGRNS 41618
Query: 689 LDITQKG 695
L + +G
Sbjct: 41617 LSLNGEG 41597
Score = 82.8 bits (203), Expect = 5e-14
Identities = 34/48 (70%), Positives = 42/48 (87%)
Frame = -2
Query: 293 VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 340
V+HNWETM +AIQN+I SLNWGYR+SLREK V Y+N+Y EF+E HK+K
Sbjct: 50771 VKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYLNAYAEFIEPHKVK 50628
Score = 81.6 bits (200), Expect = 1e-13
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = -3
Query: 253 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 292
GLGGTCVNVGCIPKKLMHQAALLGQAL DSRKFGW+Y++Q
Sbjct: 52402 GLGGTCVNVGCIPKKLMHQAALLGQALKDSRKFGWQYDEQ 52283
Score = 78.2 bits (191), Expect = 1e-12
Identities = 36/51 (70%), Positives = 46/51 (90%)
Frame = -1
Query: 510 EKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 560
+++GKIPV+D EQTNVPYVYA+GDIL+ K ELTPVAIQ+G+LLA+RL+ S
Sbjct: 44919 KRNGKIPVSDEEQTNVPYVYAIGDILDGKLELTPVAIQAGRLLARRLYAGS 44767
Score = 73.6 bits (179), Expect(2) = 3e-45
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = -3
Query: 340 KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD 381
+ATN+KGQETY+TA +FV+ATGERPRYLGI GDKEYCIT D
Sbjct: 47971 QATNRKGQETYHTAERFVLATGERPRYLGIPGDKEYCITR*D 47846
Score = 71.2 bits (173), Expect = 2e-10
Identities = 37/71 (52%), Positives = 45/71 (63%)
Frame = -1
Query: 563 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYA 622
+CDY+NVPTTVFTPLEYGCCGL EEKAI+ Y + NLE+ W L + +C
Sbjct: 44499 QCDYVNVPTTVFTPLEYGCCGLPEEKAIKEYGEHNLEV---RIWRLCF-------QSCLN 44350
Query: 623 KIICNKFDHDR 633
I+ NK D R
Sbjct: 44349 FILINKVDCQR 44317
Score = 65.1 bits (157), Expect = 1e-08
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -1
Query: 600 IYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDR 633
+YHTLFWPLEWTV R+NNTCYAKIICNK + R
Sbjct: 43080 VYHTLFWPLEWTVPNRDNNTCYAKIICNKLANVR 42979
Score = 60.1 bits (144), Expect = 4e-07
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = -3
Query: 157 DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ 193
DDG +Q+VL E+TNQ+TVPN+FVN HVGGCD T Q
Sbjct: 57343 DDGPSIQQVLMEMTNQRTVPNVFVNGTHVGGCDATLQ 57233
Score = 50.8 bits (120), Expect = 2e-04
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 228 KEAAILGKKVMVLDFVVPSPQGTSWGLGG-TCVNVGCIPKKL 268
+EAA LGKKVMVLD+VVP+P GTSWG C+ + C+ K L
Sbjct: 53647 QEAATLGKKVMVLDYVVPTPSGTSWGKAQIICLELKCM*KDL 53522
Score = 47.0 bits (110), Expect = 0.003
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = -3
Query: 444 VKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 486
+ L I + +++LE G PG+LKV+A+STEG++ EG YNTV
Sbjct: 47272 ISLLNL*IYLQIERLEDGMPGRLKVVARSTEGSDIFEGEYNTV 47144
Score = 46.2 bits (108), Expect = 0.006
Identities = 20/26 (76%), Positives = 25/26 (96%)
Frame = -1
Query: 486 VLLAIGRDSCTRKIGLEKIGVKINEK 511
VL+AIGRD+CTR IGL+KIGV+INE+
Sbjct: 46653 VLIAIGRDACTRNIGLDKIGVRINEE 46576
Score = 36.6 bits (83), Expect = 4.4
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -3
Query: 676 EVFTTLEITKSSGLDITQKGCXG 698
+VFTT+ ITKSSG +ITQ GC G
Sbjct: 41350 QVFTTMNITKSSGQEITQSGC*G 41282
>gi|397458791|gb|JH736710.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-9279, whole genome shotgun sequence
Length = 567381
Score = 142 bits (358), Expect = 6e-32
Identities = 65/86 (75%), Positives = 77/86 (89%)
Frame = -1
Query: 375 YCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEK 434
+ + SDDLFSLPYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQEMA K
Sbjct: 446496 FILFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQEMANK 446317
Query: 435 VGSYMEQHGVKFLRKFIPVMVQQLEK 460
+G +ME+HG+KF+++F+P+ V L +
Sbjct: 446316 IGEHMEEHGIKFIKQFVPIKVSLLTR 446239
Score = 88.2 bits (217), Expect = 1e-15
Identities = 49/108 (45%), Positives = 56/108 (51%), Gaps = 43/108 (39%)
Frame = -2
Query: 228 KEAAILGKKVMVLDFVVPSPQGTSWG---------------------------------- 253
+EA KKVMVLD+V P+P GTSWG
Sbjct: 451478 QEAVKYDKKVMVLDYVTPTPLGTSWGNFLLITDIL*RGISYYMALQFYFGVVFIDT*NIL 451299
Query: 254 ---------LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 292
LGGTCVNVGCIPKKLMHQAALLGQAL DS KFGW++ ++
Sbjct: 451298 CLLSLLPQGLGGTCVNVGCIPKKLMHQAALLGQALKDSHKFGWQFTEE 451155
Score = 85.5 bits (210), Expect = 8e-15
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = -2
Query: 632 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 677
+R+IGFH+LGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP C EV
Sbjct: 433103 ERIIGFHVLGPNAGEVTQGFAAAIKCGLTKEKLDSTIGIHPVCAEV 432966
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/53 (71%), Positives = 48/53 (90%), Gaps = 1/53 (1%)
Frame = -2
Query: 511 KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLF-GASLE 562
+SGKIP ND EQTNVPY+YA+GD+LEDK ELTPVAIQ+G+LL +RL+ GA+L+
Sbjct: 440180 RSGKIPANDEEQTNVPYIYAIGDVLEDKLELTPVAIQAGRLLTRRLYAGATLK 440022
Score = 79.0 bits (193), Expect(2) = 1e-25
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = -2
Query: 293 VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKK 345
V+H+WETMT+A+QN+I SLNWGYR++LR+ V Y N+YGEFV H IK NK+
Sbjct: 449144 VKHSWETMTEAVQNYIGSLNWGYRVALRDNKVTYENAYGEFVGPHTIKVLNKQ 448986
Score = 63.5 bits (153), Expect = 3e-08
Identities = 24/38 (63%), Positives = 33/38 (86%)
Frame = -3
Query: 563 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600
+CDY+NVPTTVFTP+EYG CG SEE+A+E + + N+E+
Sbjct: 436741 QCDYVNVPTTVFTPMEYGACGFSEERALEKFGENNIEV 436628
Score = 63.2 bits (152), Expect(2) = 1e-25
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -1
Query: 341 ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 378
ATN KG+E YTA +F+IATGERPRYL I GDKEYCI+
Sbjct: 448878 ATNTKGKEKLYTAEKFIIATGERPRYLNIPGDKEYCIS 448765
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -2
Query: 599 EIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 631
++YH+ FWPLEWTV GR+NN CYAKIICN D+
Sbjct: 434801 QVYHSFFWPLEWTVPGRDNNKCYAKIICNIQDN 434703
Score = 53.1 bits (126), Expect = 5e-05
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = -1
Query: 455 VQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLA 489
V+Q+E+G+PGKLKV+AKST G++TIEG YNTV ++
Sbjct: 444171 VEQIEEGTPGKLKVIAKSTTGSQTIEGEYNTVSIS 444067
Score = 50.8 bits (120), Expect = 2e-04
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = -2
Query: 486 VLLAIGRDSCTRKIGLEKIGVKINEKSGKI 515
VLLA+GRD+CTRKIGL+K+GVKIN+K G I
Sbjct: 442073 VLLAVGRDACTRKIGLDKVGVKINKK*GYI 441984
>gi|397459659|gb|JH735842.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7838, whole genome shotgun sequence
Length = 1444372
Score = 89.0 bits (219), Expect = 7e-16
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +1
Query: 249 GTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNW 297
GTSWGLGGTCVNVGCIPKKLMHQAALLG AL D+R +GW +Q + H+W
Sbjct: 864322 GTSWGLGGTCVNVGCIPKKLMHQAALLGSALKDARHYGWNISQPIHHDW 864468
Score = 54.7 bits (130), Expect = 2e-05
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = +3
Query: 382 LFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQ 429
+FS Y L+ + V+LECAGFL G GLD TVMVRSI LRGFDQ
Sbjct: 873420 VFSRNYVTYGPLIGTSPDVSLECAGFLTGIGLDTTVMVRSIPLRGFDQ 873563
Score = 53.1 bits (126), Expect = 5e-05
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +1
Query: 485 TVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE 536
T L GR TR + LE +GVK+N ++GKI V+ E T+VP++YAVGDI E
Sbjct: 886942 TSLFP*GRVPDTRTLNLETVGVKMNSETGKIIVDASEATSVPHIYAVGDITE 887097
Score = 53.1 bits (126), Expect = 5e-05
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 567 INVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600
+ VPTTVFTPLEYGC GLSEEKA+ Y ++N E+
Sbjct: 893255 MQVPTTVFTPLEYGCVGLSEEKAVGRYGEDNTEV 893356
Score = 48.1 bits (113), Expect = 0.001
Identities = 23/43 (53%), Positives = 26/43 (60%)
Frame = +3
Query: 656 KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCXG 698
+CG T + T+GIHPT E T L ITK SGLD T GC G
Sbjct: 898968 RCGATYSQMMKTVGIHPTSAEEVTKLHITKRSGLDATVTGC*G 899096
Score = 45.8 bits (107), Expect = 0.007
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +1
Query: 430 EMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLA 489
+M+ V YME HG +FL+K IP V++L+ GKL+V K+ + + ++TV+ A
Sbjct: 876133 QMSSLVADYMESHGTRFLKKCIPTKVEELDS---GKLQVSWKNADVGKEETDSFDTVIWA 876303
Query: 490 IGR 492
+G+
Sbjct: 876304 VGK 876312
Score = 41.6 bits (96), Expect = 0.14
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +1
Query: 536 EDKPELTPVAIQSGKLLAQRLFGASLEKCDYINV 569
+ +PELTP AI +GKLLA+RLF S E DY +V
Sbjct: 892882 QGRPELTPTAIAAGKLLARRLFSQSSELMDYDSV 892983
Score = 41.6 bits (96), Expect = 0.14
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 623 KIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK 656
+++C + R++G H +GPNAGEV QGFA +K
Sbjct: 896753 QMVCLREKEQRLLGLHFIGPNAGEVIQGFALGIK 896854
Score = 38.5 bits (88), Expect = 1.2
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +2
Query: 296 NWETMTKAIQNHISSLNWGYRLSLREK 322
N TM +A+QN++ SLNWG+R+ L++K
Sbjct: 864800 NRSTMAQAVQNYVKSLNWGHRVQLQDK 864880
>gi|397461104|gb|JH734397.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5488, whole genome shotgun sequence
Length = 134241
Score = 50.8 bits (120), Expect = 2e-04
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +2
Query: 633 RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 681
+V+G H+ G E+ QGFA A+K G TK D+TI IHPT E TL
Sbjct: 104114 KVVGLHMQGLGCDEMLQGFAVAIKMGATKADFDNTIAIHPTSAEELVTL 104260
Score = 41.6 bits (96), Expect = 0.14
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 541 LTPVAIQSGKLLAQRLF-GASLEKCDYINVPTTVFTPLEYGCCGLSEEKA 589
L VAI +G+ LA RLF G K DY N+PT VF+ G GL+E K+
Sbjct: 89809 LLTVAIAAGRKLAHRLFEGKKDSKLDYSNIPTVVFSHPPIGTVGLTEGKS 89958
>gi|397463495|gb|JH732006.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1615, whole genome shotgun sequence
Length = 401117
Score = 47.0 bits (110), Expect = 0.003
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -3
Query: 123 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTV 175
VVIFSK+ C + K+LF + V +ELD +G+++QEVL ++T +TV
Sbjct: 44217 VVIFSKTTCSYCKMAKKLFQDMNVNYTAVELDMQRNGSQLQEVLQQMTGGRTV 44059
>gi|397463537|gb|JH731964.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1553, whole genome shotgun sequence
Length = 758294
Score = 41.6 bits (96), Expect = 0.14
Identities = 28/57 (49%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 47 GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGA---RVLSPPGRRARLSSPGP 100
GRA+S ER P G A RRS RG R SPPGRRARL SPGP
Sbjct: 505505 GRAKSRRAARERVPRALLGHAAAA---GRRSAQPRGRHRPRRASPPGRRARLPSPGP 505344
>gi|397458151|gb|JH737350.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-10358, whole genome shotgun sequence
Length = 424722
Score = 40.0 bits (92), Expect = 0.40
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = -1
Query: 44 SRPGRARSESETLERSPPQSPGPGKAG--------DAPNRRSGHVRGARVLSPPGRRARL 95
+RPG + R P + PG G AG AP RR R SP GRRAR
Sbjct: 156594 ARPGGRSAAPGAPSRGPARRPGRGAAGAGCSRRAAPAPGRRPAAPAPRRSRSPAGRRARA 156415
Query: 96 SSPGP 100
PGP
Sbjct: 156414 PGPGP 156400
>gi|397460178|gb|JH735323.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6974, whole genome shotgun sequence
Length = 389885
Score = 39.7 bits (91), Expect = 0.52
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 484 NTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVP 526
+ +L+ IGR T+ +GLE +GV+++ K G+IPVN QT +P
Sbjct: 16694 DVLLVCIGRRPFTKNLGLEDLGVELDNK-GRIPVNTRFQTKIP 16819
>gi|397463475|gb|JH732026.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1642, whole genome shotgun sequence
Length = 1366832
Score = 39.3 bits (90), Expect = 0.68
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 42 FVSRPGRARSESETLERSPPQSPGPGKAGDAP--NRRSGHVRGARVLSP-PGRRARLSSP 98
F + GRA +S T +P SPG G G AP RR+ RG L+P PG AR ++P
Sbjct: 343540 FSAPRGRAPHQSNTSPGAPSHSPGRGGEGGAPCLRRRASLRRGRPPLAPAPGAAARRTAP 343719
Query: 99 GP 100
P
Sbjct: 343720 PP 343725
>gi|397461345|gb|JH734156.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5100, whole genome shotgun sequence
Length = 1361428
Score = 38.5 bits (88), Expect = 1.2
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 43 VSRPGRA----RSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 98
V RPGRA R+ + T P +PGP +A R +G V G+ L P GR+ + S+
Sbjct: 405277 VGRPGRAERVGRAAAPTGGSERPGAPGPARAQRRGGREAGAVAGSAPLVPAGRKGQSSAG 405456
Query: 99 G 99
G
Sbjct: 405457 G 405459
>gi|397455937|gb|JH739563.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-14095, whole genome shotgun sequence
Length = 479013
Score = 37.7 bits (86), Expect = 2.0
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +3
Query: 47 GRARSESETLERSPPQSPGPGKAGDAPNRRS----GHVRG-ARVLSPPGRRARLSSPGP 100
GR R + PPQ PGP +AGD P R+ G RG AR PP RAR GP
Sbjct: 265941 GRRRVSAYVPPLLPPQLPGPCQAGDWPRPRARAGGGAQRGPARAQPPPQDRARGQMEGP 266117
>gi|397463942|gb|JH731559.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-932, whole genome shotgun sequence
Length = 1484842
Score = 37.7 bits (86), Expect = 2.0
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Frame = +1
Query: 46 PGRARSESETLERSPPQSPGP-----GKAGDAPNRRSG-----HVRGARVLSPPGRRAR 94
PGRARS S T SPP SP P + G A RR G AR S GRRAR
Sbjct: 411604 PGRARSRSRTARTSPPTSPAPPARPCPRPGGACWRRRGGAGTSRAASARGWSGSGRRAR 411780
>gi|397463600|gb|JH731901.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1442, whole genome shotgun sequence
Length = 799285
Score = 37.4 bits (85), Expect = 2.6
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -3
Query: 46 PGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVR 81
PGR +++S + PPQ PGPG AG P R +G R
Sbjct: 483650 PGRGKAQSPGTQHLPPQGPGPGPAG--PRRTAGGAR 483549
>gi|397461995|gb|JH733506.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-3994, whole genome shotgun sequence
Length = 188601
Score = 37.0 bits (84), Expect = 3.4
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 51 SESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
+ S T +P S G G+ G AP GHVRG R + PGR +R + GP
Sbjct: 139172 TRSRTNSPAPAPSAGRGRGGAAP----GHVRGHRAHAGPGRGSRPLTSGP 139309
>gi|397460114|gb|JH735387.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7078, whole genome shotgun sequence
Length = 1036343
Score = 36.2 bits (82), Expect = 5.7
Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 46 PGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR--LSSP 98
PG AR + ERSPP PGP P+ R G R V +PP R AR LSSP
Sbjct: 456965 PGAARQLCQA-ERSPPPPPGP------PSSRLGPWRALAVPAPPQRGARSLLSSP 457108
>gi|397460400|gb|JH735101.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6622, whole genome shotgun sequence
Length = 448371
Score = 36.2 bits (82), Expect = 5.7
Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Frame = +2
Query: 11 RGFARVVRVASEGSVR--RXXXXXXXXXXXAFRFVSRPGRARSESETLERSPPQSPGPGK 68
RG AR + V + R R A +F S PG T R P PGPG
Sbjct: 147698 RGSARALNVPEPDTSRPGRQDTHVLAPAVAALKFPSAPGLP--PRRTCPREPQPGPGPGA 147871
Query: 69 AGDAPNRRSGHV-----RGARVLSPPGRRARLSS 97
AP GHV GA S G R R S+
Sbjct: 147872 GPPAPRGHGGHVAPAAQEGAHSNSGAGTRPRRST 147973
Score = 35.4 bits (80), Expect = 9.8
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 43 VSRPGRARSESETL-ERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGR 91
++RP AR E R+PPQ P PG+ P R HVRG R SP R
Sbjct: 51518 LARPRTARPERRWEGPRAPPQRPHPGQVAAPPGR---HVRGLRGCSPRAR 51658
>gi|397462789|gb|JH732712.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2713, whole genome shotgun sequence
Length = 141252
Score = 36.2 bits (82), Expect = 5.7
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -2
Query: 44 SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVR-----GARVLSPPGRRAR 94
+R +R E + L R P SP P +GD P R G R G L PPG R R
Sbjct: 17831 NRRSTSRRE-KVLRRGPVPSPAPSPSGDIPTSRRGRGRPGRQAGRAALGPPGGRVR 17667
>gi|397463418|gb|JH732083.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1726, whole genome shotgun sequence
Length = 851351
Score = 36.2 bits (82), Expect = 5.7
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 43 VSRPGR-ARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
VSR R AR S PP PG G+ P+RR GAR P G RAR+ PGP
Sbjct: 134770 VSRQFRGARGSSSPAAGRPPHGPGGGEGSLPPSRRPRPGWGARTHLPFG-RARVLPPGP 134597
>gi|397458516|gb|JH736985.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-9760, whole genome shotgun sequence
Length = 89456
Score = 35.8 bits (81), Expect = 7.5
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Frame = -2
Query: 46 PGRARSESETLERSPPQSPGPGKAGDAPN-RRSGHVRGARVL-------SPPGRRAR-LS 96
PG+ RS R PP+SP PG P +R RG+R +PPGRR R L
Sbjct: 88144 PGKGRSGC----RPPPRSPSPGPEAARPGWQRVAAARGSRGKHGKCPRPAPPGRRGRSLR 87977
Query: 97 SPGP 100
PGP
Sbjct: 87976 PPGP 87965
>gi|397459189|gb|JH736312.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8616, whole genome shotgun sequence
Length = 658311
Score = 35.8 bits (81), Expect = 7.5
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = -3
Query: 43 VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
V+ P R R+ T R P++ GPG+AG RR +PPGR A + PGP
Sbjct: 48172 VTSPPRGRATCSTSHRGHPRA-GPGRAG----RRGRLSHAPEA*APPGRAAGAARPGP 48014
>gi|397458124|gb|JH737377.1| Alligator mississippiensis unplaced
genomic scaffold scaffold-10404, whole genome shotgun
sequence
Length = 625735
Score = 35.4 bits (80), Expect = 9.8
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -3
Query: 46 PGRARSESETLERSPPQSPGPGKAGDAPN----RRSGHVRGAR----VLSPPGRRAR-LS 96
PGR RS R PP+SPGP P +G RG R +PPGRR R L
Sbjct: 2231 PGRGRSGC----RRPPRSPGPAPEAAHPGWQRAAAAGGSRGKRGKCXCPAPPGRRGRLLR 2064
Query: 97 SPGP 100
PGP
Sbjct: 2063 LPGP 2052
>gi|397460449|gb|JH735052.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6543, whole genome shotgun sequence
Length = 659660
Score = 35.4 bits (80), Expect = 9.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 63 SPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
SP +G P R S G RVL+ PGRR R ++P P
Sbjct: 563069 SPSTAGSGPRPGRCSHTTGGLRVLAQPGRRLRAAAPSP 562956
>gi|397460807|gb|JH734694.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5973, whole genome shotgun sequence
Length = 319029
Score = 35.4 bits (80), Expect = 9.8
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 48 RARSESETLERSPPQS---PGPGKAGDA--PNRRSGHVRGARVLSPPGR 91
R R ESET R PP+S PG + G A P +G RVL+PP R
Sbjct: 248953 RRRRESETAPRRPPRSPAWPGSARLGSACGPQLHAGPPGSPRVLAPPQR 249099
>gi|397461058|gb|JH734443.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5558, whole genome shotgun sequence
Length = 376683
Score = 35.4 bits (80), Expect = 9.8
Identities = 25/57 (43%), Positives = 28/57 (49%)
Frame = +1
Query: 44 SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
S P +ARSE RSPP S PG G + S +RG L PGRR S P P
Sbjct: 310435 SCPAKARSERAGGHRSPPPSLEPGNFGGELVQGSHPLRGQAQL--PGRREVPSVPSP 310599
Score = 35.4 bits (80), Expect = 9.8
Identities = 25/57 (43%), Positives = 28/57 (49%)
Frame = +1
Query: 44 SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
S P +ARSE RSPP S PG G + S +RG L PGRR S P P
Sbjct: 312055 SCPAKARSERAGGHRSPPPSLEPGNFGGELVQGSHPLRGQAQL--PGRREVPSVPSP 312219
>gi|397462659|gb|JH732842.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2945, whole genome shotgun sequence
Length = 668557
Score = 35.4 bits (80), Expect = 9.8
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = -3
Query: 46 PGRARSESETLERSPPQSPGPGKAGDAPN-RRSGHVRGARVL-------SPPGRRARLSS 97
PGR RS R PP+SPGP P +R+ G+R +PPGRRARL
Sbjct: 484085 PGRGRSGY----RRPPRSPGPEPEAACPGWQRAAAAGGSRGKHGKCPRPAPPGRRARLLR 483918
Query: 98 P 98
P
Sbjct: 483917 P 483915
>gi|397463565|gb|JH731936.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1506, whole genome shotgun sequence
Length = 901028
Score = 35.4 bits (80), Expect = 9.8
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 59 SPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
S P +PGP +A P+R RG R + P AR SSPGP
Sbjct: 839803 SRPPTPGPWRASSPPHRLDSAPRGLRASALP---ARFSSPGP 839919
>gi|397464141|gb|JH731360.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-605, whole genome shotgun sequence
Length = 1011670
Score = 35.4 bits (80), Expect = 9.8
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = -2
Query: 60 PPQSPGPGKAGD--------APNRRSGHVRGARVLSPPGRRARLSSPGP 100
P Q+PGPG+AG AP+ R G + R L GR A +PGP
Sbjct: 67593 PRQAPGPGRAGPGWRWGGARAPSGRRGRPQPRRCLGLGGREAPREAPGP 67447
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,840,585,922
Number of Sequences: 14644
Number of extensions: 29586589
Number of successful extensions: 156085
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 1671
Number of HSP's that attempted gapping in prelim test: 129093
Number of HSP's gapped (non-prelim): 60576
length of query: 698
length of database: 724,747,747
effective HSP length: 137
effective length of query: 561
effective length of database: 722,741,519
effective search space: 405457992159
effective search space used: 405457992159
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)