Find start end points: [109,28790][695,58712] Score 285511
Recovering alignment: Alignment recovered14] Explicit read off77%%
genewise output
Score 823.81 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397461694|gb|JH733807.1|:subseq(0,100000) is longer than
allowed name block (15). Truncating
SPP00000141_2.0 110 LRRHLVGLIERSRVVIFSKSYCPHSTR
L+ + L+ RV++FSKSYCP+ R
LKLRVRSLVGSHRVLVFSKSYCPYCLR
gi|397461694|g-71212 caccgctcggtccgcgtaaattcttccGTGAGCG Intron 1
tatgtgcttgcagttttgagagcagtg<0-----[71131:58989]
gggcggggctgcccgcccgccccccgg
SPP00000141_2.0 137 VKELFSSLGVECNVLELDQV
VKELF S+G+E LELD +
VKELFRSMGLEYYALELDVI D:D[gat]
gi|397461694|g-58991 CAGgagctctagcgttgtgcggaGGTAAGTA Intron 2 CAGAT
-0>taattgctgtaaactatatt <1-----[58927:57343]-1>
gaatcttgaagttcgattat
SPP00000141_2.0 158 DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ
DG +Q+VL E+TNQ+TVPN+FVN HVGGCD T+Q
DGPSIQQVLMEMTNQRTVPNVFVNGTHVGGCDATLQ
gi|397461694|g-57340 ggcaaccgtagaaacaagcagtgagacgggtggacc
agcgtaatttatcaagctcatttagcatgggaccta
tacttgagagggtcagtgctatgcgatatactattg
SPP00000141_2.0 194 AYQSGLLQKLLQEDL---AYDYDLII
AYQ+G LQKLL YDYDLI+
AYQNGSLQKLLGSGTDVKPYDYDLIV
gi|397461694|g-57232 GTAACTT Intron 3 CAGgtcagtccaccgtgaggactgtgcag
<0-----[57232:55121]-0>caaagctaattgcgcatacaaaattt
tcgccagggtcgtagtagattttctt
SPP00000141_2.0 217 IGGGSGGLSCAK EAAILGKKVMVLDF
IGGGSGGL+C+K EAA LGKKVMVLD+
IGGGSGGLACSK EAATLGKKVMVLDY
gi|397461694|g-55042 agggtggcgttaGTATGTC Intron 4 CAGgggatgaagagcgt
tgggcggtcgca<0-----[55006:53645]-0>accctgaattttaa
tttcttatttag attcaaaacggatt
SPP00000141_2.0 243 VVPSPQGTSW LGGTCVNVGCIPK
VVP+P GTSW LGGTCVNVGCIPK
VVPTPSGTSW G:G[gga] LGGTCVNVGCIPK
gi|397461694|g-53602 ggcactgattGGTAAGGC Intron 5 CAGGAcggatgaggtaca
ttccccgccg <1-----[53571:52402]-1> tggcgtatggtca
taaatgtccg tttttccaccttg
SPP00000141_2.0 267 KLMHQAALLGQALCDSRKFGWEYNQQ
KLMHQAALLGQAL DSRKFGW+Y++Q
KLMHQAALLGQALKDSRKFGWQYDEQ V:V[gtt]
gi|397461694|g-52360 acaccggctgcgcagtcatgtctggcGGTTGGTA Intron 6
attaaccttgactaacgatggaaaaa <1-----[52281:50771]
aggtatgtgagctgtatatcggttga
SPP00000141_2.0 293 RHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHH
+HNWETM +AIQN+I SLNWGYR+SLREK V Y+N+Y EF+E H
KHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYLNAYAEFIEPH
gi|397461694|g-50773 CAGTTacatgaagggacatagtcatgtagttagaagatcagtggtagcc
-1> aaagacttactaaatgctaggagtctgaactcatacacattaca
accgacgaaatgctactacgccggtaagatcacccgcaattaat
SPP00000141_2.0 338 KIK ATNKKGQETYYTAAQFVIATGER
K+K ATN+KGQETY+TA +FV+ATGER
KVK ATNRKGQETYHTAERFVLATGER
gi|397461694|g-50636 agaGTATATG Intron 7 CAGgaaaagcgatcaggatgcgagga
ata<0-----[50627:47969]-0>ccagagaacaaccagtttccgag
aag aatgagaacttaaaatcacaggg
SPP00000141_2.0 364 PRYLGIQGDKEYCIT DDLFSLPY
PRYLGI GDKEYCIT DDL+SLPY
PRYLGIPGDKEYCIT S:S[agt] DDLxSLPY
gi|397461694|g-47899 ccttgacggagttaaAGGTGAGAT Intron 8 TAGTggcttcct
cgatgtcgaaaagtc <2-----[47852:47731]-2> aattctca
catgtttataactta ttcNcgtc
SPP00000141_2.0 388 CPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG
CPGKTLVVGAS+VALECAGFL+G+GLDV+VMVRSILLRGFDQEMAE++G
CPGKTLVVGASxVALECAGFLxGIGLDVSVMVRSILLRGFDQEMAERIG
gi|397461694|g-47705 tcgaacggggttggcgtggtcggagtggtgagctacccgtgcgaggaag
gcgactttgccatctagcgttcgtgtatctttgctttggtaaatcagtg
ctcatttgagcNgtggtagttNcttgtggtggcccttatttaagaaaat
SPP00000141_2.0 437 SYMEQHGVKFLRKFIPV-----MVQ
++ME HGVKF+R+F+P+ ++
AHMETHGVKFIRRFVPIQASAFVLR Q:L[ttg]
gi|397461694|g-47558 gcagacggataaatgcacgagtgtcTTGTTCGTT Intron 9
catacagtattggttctacgctttg <2-----[47481:47232]
ttgacttgaccgatattgatattat
SPP00000141_2.0 457 LEKGSPGKLKVLAKSTEGTETIEGVYNT
LE G PG+LKV+A+STEG++ +EG YNT
LEDGMPGRLKVVARSTEGSDIFEGEYNT
gi|397461694|g-47234 AAGGcgggacgacagggataggtgatgggtaa
-2> taagtcggtattcgccagcattagaaac
gatcgtaagagaagttgaacttaagtct
SPP00000141_2.0 486 VLLAIGRDSCTRKIGLEKIGVKINE
VL+AIGRD+CTR IGL+KIGV+INE
VLIAIGRDACTRNIGLDKIGVRINE
gi|397461694|g-47146 GTAAGCA Intron 10 TAGgtagagcggtaaaagtgaaggaaag
<0-----[47146:46654]-0>tttctggacgcgatgtaatgtgtaa
tgaatcttaccacttgtacgcacta
SPP00000141_2.0 511 SGKIPVNDVEQTNVPYVYAVGDI
+GKIPV+D EQTNVPYVYA+GDI
K:E[gag] NGKIPVSDEEQTNVPYVYAIGDI
gi|397461694|g-46578 GAGTGAGTA Intron 11 AAGGagaacgagggcaagctgtgagga
<2-----[46576:44915]-2> agatctgaaaacatcatactgat
taaaaattaaactgttctttatc
SPP00000141_2.0 535 LEDKPELTPVAIQSGKLLAQRLFGASLEK
L+ K ELTPVAIQ+G+LLA+RL+ S K
LDGKLELTPVAIQAGRLLARRLYAGSSIK
gi|397461694|g-44844 tggacgcacggacggaccgcactggataaGTAAGAT Intron 12
tagatatcctctacggttcggtacggcta<0-----[44757:44497]
gtaatagcatctgacaaatcattttttag
SPP00000141_2.0 564 CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLE
CDY+NVPTTVFTPLEYGCCGL EEKAI+ Y + NLE
CDYVNVPTTVFTPLEYGCCGLPEEKAIKEYGEHNLE
gi|397461694|g-44499 CAGtgtgagcaagtactgtgttgccggagaagtggcatg
-0>gaatatcccttcctaaggggtcaaactaaagaaata
tttctaatattttgatcttagaagaataatagtcgg
SPP00000141_2.0 600 IYHTLFWPLEWTVAGRENNTCYAKII
+YHTLFWPLEWTV R+NNTCYAKII
VYHTLFWPLEWTVPNRDNNTCYAKII
gi|397461694|g-44388 GTGAGAA Intron 13 TAGgtcatttccgtagcaagaaattgaaa
<0-----[44388:43081]-0>taacttgctagctcagaaacgacatt
ttctgcgatggaaccaccttttagta
SPP00000141_2.0 626 CNKFDH DRVIGFHILGPNAGEVTQGF
CNK+ + +RVIGFH+LGPNAGE+TQGF
CNKLAN NRVIGFHVLGPNAGEITQGF
gi|397461694|g-43002 taacgaGTACGTA Intron 14 AAGacgagtcgcgcagggaacgt
gaatca<0-----[42984:41789]-0>agttgtattgcacgatcagt
ccatat ctctattttcctttaatact
SPP00000141_2.0 652 AAAMKCGLTKQLLDDTIGIHPTCGE V
AAA+KCGLTK+LL++TIGIHPTC E V
AAAIKCGLTKELLNETIGIHPTCAE V
gi|397461694|g-41728 gggaatgcaagccagaagaccatggGTAAGGG Intron 15 CAGg
ccctaggtcaattaactgtaccgca<0-----[41653:41348]-0>t
taaaattgaaagttagttataatag g
SPP00000141_2.0 678 FTTLEITKSSGLDITQKGC
FTT+ ITKSSG +ITQ GC
FTTMNITKSSGQEITQSGC
gi|397461694|g-41344 taaaaaaattgcgaacagt
tcctatcaccgaatcaggg
cttgttaatcaagttgtcc
//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a L in phase 2 intron
Making a E in phase 2 intron
>gi|397461694|gb|JH733807.1|:subseq(0,100000).pep
LKLRVRSLVGSHRVLVFSKSYCPYCLRVKELFRSMGLEYYALELDVIDDGPSIQQVLMEM
TNQRTVPNVFVNGTHVGGCDATLQAYQNGSLQKLLGSGTDVKPYDYDLIVIGGGSGGLAC
SKEAATLGKKVMVLDYVVPTPSGTSWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRKFG
WQYDEQVKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYLNAYAEFIEPHKVKATNRKG
QETYHTAERFVLATGERPRYLGIPGDKEYCITSDDLxSLPYCPGKTLVVGASxVALECAG
FLxGIGLDVSVMVRSILLRGFDQEMAERIGAHMETHGVKFIRRFVPIQASAFVLRLLEDG
MPGRLKVVARSTEGSDIFEGEYNTVLIAIGRDACTRNIGLDKIGVRINEENGKIPVSDEE
QTNVPYVYAIGDILDGKLELTPVAIQAGRLLARRLYAGSSIKCDYVNVPTTVFTPLEYGC
CGLPEEKAIKEYGEHNLEVYHTLFWPLEWTVPNRDNNTCYAKIICNKLANNRVIGFHVLG
PNAGEITQGFAAAIKCGLTKELLNETIGIHPTCAEVFTTMNITKSSGQEITQSGC
//
>gi|397461694|gb|JH733807.1|:subseq(0,100000).[71212:41286].sp
CTGAAGCTGCGCGTGCGGTCGCTGGTCGGTTCGCACCGCGTCCTGGTCTTCAGCAAGAGC
TACTGCCCCTACTGCCTGCGGGTGAAAGAACTTTTCCGTTCTATGGGACTAGAGTATTAT
GCCTTGGAACTTGATGTAATTGATGATGGACCCAGTATTCAGCAAGTGTTAATGGAGATG
ACTAACCAAAGGACTGTGCCCAATGTATTTGTGAACGGGACACATGTAGGTGGATGCGAT
GCAACTCTTCAGGCTTACCAGAACGGCTCACTGCAGAAGCTTCTCGGGTCTGGAACGGAT
GTAAAGCCATATGATTATGATCTCATTGTTATTGGTGGTGGCTCTGGTGGACTTGCTTGT
TCAAAGGAAGCTGCTACCTTAGGAAAAAAAGTCATGGTGCTAGATTATGTTGTACCAACA
CCTTCGGGTACCTCCTGGGGACTTGGTGGTACTTGTGTCAACGTAGGCTGCATTCCTAAG
AAACTGATGCATCAAGCTGCGCTTTTGGGACAGGCCCTTAAGGATTCACGTAAATTTGGC
TGGCAGTATGATGAGCAAGTTAAACACAACTGGGAAACCATGGTAGAAGCAATTCAGAAC
TATATAGGCTCTCTAAACTGGGGCTACAGGGTGTCTTTAAGAGAGAAAACTGTCACATAC
CTCAACGCGTACGCAGAATTTATTGAACCACATAAAGTAAAGGCAACAAATAGGAAAGGG
CAAGAAACCTATCATACAGCAGAAAGATTTGTCCTAGCCACAGGGGAGAGGCCCCGATAT
TTGGGTATTCCTGGAGATAAAGAATACTGTATTACAAGTGATGATCTCTTNTCCCTGCCT
TACTGCCCTGGCAAAACTCTTGTTGTGGGAGCGTCCTANGTGGCTCTGGAGTGTGCAGGG
TTTCTTGCNGGCATTGGTTTGGATGTGTCGGTTATGGTGCGCTCCATCCTTCTTCGAGGT
TTTGATCAAGAAATGGCAGAAAGAATAGGTGCTCATATGGAAACCCATGGTGTGAAATTC
ATCAGGAGATTTGTACCTATTCAGGCAAGTGCATTTGTTTTACGTTTGCTGGAAGATGGC
ATGCCTGGAAGACTGAAAGTGGTAGCAAGGTCTACTGAGGGATCAGACATTTTTGAAGGA
GAGTATAACACTGTTTTGATAGCAATTGGCCGTGATGCATGCACCAGAAACATTGGTTTG
GATAAAATCGGGGTCAGAATCAATGAAGAGAATGGAAAAATACCAGTAAGTGATGAAGAA
CAAACCAATGTGCCTTATGTCTATGCTATTGGAGATATCTTGGATGGAAAACTTGAACTG
ACCCCAGTTGCCATTCAGGCAGGCAGACTACTAGCTCGCAGACTTTATGCTGGTAGTTCT
ATAAAGTGTGATTATGTCAATGTACCAACTACAGTTTTTACTCCTTTGGAATATGGCTGT
TGTGGACTGCCAGAAGAGAAAGCAATTAAAGAATATGGAGAGCATAACTTGGAGGTTTAT
CACACTTTGTTCTGGCCACTTGAGTGGACAGTACCCAACAGAGACAACAATACTTGTTAT
GCAAAGATTATATGCAACAAACTTGCAAATAACCGTGTCATTGGATTTCATGTTCTTGGC
CCCAATGCTGGTGAAATAACTCAAGGCTTTGCTGCAGCAATAAAATGTGGTCTGACAAAA
GAACTGCTTAATGAAACGATTGGTATACATCCAACATGTGCAGAGGTGTTCACTACTATG
AATATTACAAAATCTTCCGGACAAGAGATTACTCAGAGTGGCTGC
//
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise match 71212 41288 829.80 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 71212 71132 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 71131 58989 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 58988 58928 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 58927 57343 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 57342 57233 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 57232 55121 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 55120 55007 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 55006 53645 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 53644 53572 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 53571 52402 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 52401 52282 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 52281 50771 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 50770 50628 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 50627 47969 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47968 47853 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47852 47731 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47730 47482 0.00 - 1 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47481 47232 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47231 47147 0.00 - 1 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47146 46654 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 46653 46577 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 46576 44915 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 44914 44758 0.00 - 1 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 44757 44497 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 44496 44389 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 44388 43081 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 43080 42985 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 42984 41789 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 41788 41654 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 41653 41348 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 41347 41288 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
//