C4 Alignment:
------------
Query: SPP00000138_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Human (Homo sapiens)
Target: gi|397458791|gb|JH736710.1|:subseq(380000,120000) Alligator mississippiensis unplaced genomic scaffold scaffold-9279, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1266
Query range: 8 -> 524
Target range: 112107 -> 47676
9 : ArgGlyLeuGlyGlyArgPheArgTrpArgThrGlnAlaValAlaGlyGlyValArgG : 28
|||||| !||||||!.! !:! !!.!!:!!!.! !::!|||!.!!.! !!|
ArgGlyAlaGlyGlyHisGlyGlnLeuGlyAlaGluGlyGlnSerGlyAlaAlaGlyG
112107 : CGCGGGGCCGGGGGCCATGGGCAGCTCGGTGCGGAAGGGCAGAGCGGTGCAGCAGGCG : 112050
29 : lyAlaAlaArgGlyAla{Al} >>>> Target Intron 1 >>>> {a}Ala : 36
||||||||! ! !::!{ } 22530 bp {!} !
lyAlaAlaProProSer{Ar}++ ++{g}Gln++
112049 : GAGCCGCCCCGCCGAGC{AG}gt.........................ag{G}CAGgt : 89496
37 : >>>> Target Intron 2 >>>> GlyGlnArgAspTyrAspLeuLeuValValG : 46
13055 bp ! !... !||||||||||||:!!|||:!!|
++GluSerTyrAspTyrAspLeuIleValIleG
89495 : .........................agGAGTCCTATGACTATGACCTAATTGTCATTG : 76411
47 : lyGlyGlySerGlyGlyLeuAlaCysAlaLys >>>> Target Intron 3 >>> : 57
|||||||||||||||||||||||..!|||||| 4903 bp
lyGlyGlySerGlyGlyLeuAlaAlaAlaLys++
76410 : GAGGGGGATCTGGAGGTCTGGCTGCTGCCAAGgt........................ : 76376
58 : > GluAlaAlaGlnLeuGlyArgLysValAlaValValAspTyrValGluProSerP : 75
||||||!.!:!!! !! !!:!|||||| !|||:!!||||||||| |||!!!|
++GluAlaValLysTyrAspLysLysValMetValLeuAspTyrValThrProThrP
76375 : .agGAGGCTGTCAAGTATGATAAGAAAGTGATGGTGCTGGACTATGTGACTCCTACTC : 71421
76 : roGlnGlyThrArgTrp{G} >>>> Target Intron 4 >>>> {ly}LeuGl : 83
||! !|||||| !|||{|} 129 bp {||}|||||
roLeuGlyThrSerTrp{G}++ ++{ly}LeuGl
71420 : CTCTGGGAACTTCATGG{G}gt.........................ag{GT}CTCGG : 71268
84 : yGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeu : 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
yGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeu
71267 : AGGAACATGTGTAAATGTGGGCTGTATACCTAAAAAATTGATGCACCAGGCAGCTTTG : 71211
103 : LeuGlyGlyLeuIleGlnAspAlaProAsnTyrGlyTrpGluValAlaGlnPro{V} : 121
|||||| ! !:!!:!!|||:!!! !!!.!:!||||||:!! !!.!!:!! !{|}
LeuGlyGlnAlaLeuLysAspSerHisLysPheGlyTrpGlnPheThrGluGlu{V}+
71210 : CTGGGACAAGCCTTAAAAGATTCCCACAAATTTGGATGGCAGTTTACAGAAGAA{G}g : 71153
122 : >>>> Target Intron 5 >>>> {al}ProHisAspTrpArgLysMetAlaGl : 130
2010 bp {||} !|||..!|||..!! |||.!!||
+ ++{al}LysHisSerTrpGluThrMetThrGl
71152 : t.........................ag{TC}AAACACAGCTGGGAGACTATGACAGA : 69117
131 : uAlaValGlnAsnHisValLysSerLeuAsnTrpGlyHisArgValGlnLeuGlnAsp : 149
|||||||||||||:!!:!! !|||||||||||||||:!!|||||| |||::!|||
uAlaValGlnAsnTyrIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgAsp
69116 : AGCTGTTCAGAATTATATTGGGTCACTAAACTGGGGTTATAGAGTCGCTTTGAGAGAC : 69060
150 : ArgLysValLysTyrPheAsnIleLysAlaSerPheValAspGluHisThrValCys : 169
!.!||||||! !||| ||| ! ! !.!..!||||||! !||||||:!!
AsnLysValThrTyrGluAsnAlaTyrGlyGluPheValGlyProHisThrIleLys+
69059 : AACAAGGTCACATATGAGAATGCATATGGAGAGTTTGTTGGGCCGCACACTATTAAGg : 69000
170 : >>>> Target Intron 6 >>>> GlyValAlaLysGlyGlyLysGluIleLeu : 178
122 bp !.!..! !! ! !|||||||||! !|||
+ ++AlaThrAsnThrLysGlyLysGluLysLeu
68999 : t.........................agGCAACAAATACAAAAGGGAAAGAGAAACTG : 68851
179 : LeuSerAlaAspHisIleIleIleAlaThrGlyGlyArgProArgTyrProThrHisI : 198
! !!!!|||!!: ! .!!|||||||||||||||! !|||||||||||| !:!!|
TyrThrAlaGluLysPheIleIleAlaThrGlyGluArgProArgTyr---LeuAsnI
68850 : TACACAGCAGAGAAATTTATTATTGCCACTGGTGAAAGGCCACGCTAC---TTGAATA : 68794
199 : leGluGlyAlaLeuGluTyrGlyIleThr{Se} >>>> Target Intron 7 >> : 208
|| |||! ! !|||||| !!|||!:!{||} 2280 bp
leProGlyAspLysGluTyrCysIleSer{Se}++
68793 : TCCCTGGAGACAAGGAATACTGCATTAGC{AG}gt....................... : 68760
209 : >> {r}AspAspIlePheTrpLeuLysGluSerProGlyLysThrLeuValValGly : 225
{|}||||||:!:|||! ||| ! !!!||||||||||||||||||||||||
++{r}AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGly
68759 : ..ag{T}GACGATCTGTTCTCCCTGCCTTACTGTCCAGGAAAAACCCTGGTAGTTGGA : 66433
226 : AlaSerTyrValAlaLeuGluCysAlaGlyPheLeuThrGlyIleGlyLeuAspThrT : 245
||||||||||||||||||||||||||||||||||||.!!|||||||||||||||..!|
AlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValT
66432 : GCTTCCTATGTTGCCCTTGAATGTGCTGGATTTCTTGCGGGGATTGGTTTAGATGTAA : 66373
246 : hrIleMetMetArgSerIleProLeuArgGlyPheAspGlnGlnMetSerSerMetVa : 264
||:!!|||:!!|||||||||! !||||||||||||||||||:!!|||:!!!:!! :!
hrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMetAlaAsnLysIl
66372 : CTGTAATGGTGCGATCCATTCTTTTAAGAGGGTTTGACCAGGAAATGGCAAACAAAAT : 66316
265 : lIleGluHisMetAlaSerHisGlyThrArgPheLeuArgGlyCysAlaProSerArg : 283
! !|||||||||! !..!||||||! !!:!|||:!!!:! !! !!.!|||! !!:!
eGlyGluHisMetGluGluHisGlyIleLysPheIleLysGlnPheValProIleLys
66315 : TGGAGAACACATGGAAGAACATGGGATCAAGTTTATTAAGCAGTTTGTGCCAATTAAG : 66259
284 : >>>> Target Intron 8 >>>> ValArgArgLeuProAspGlyGlnLeuGl : 293
2094 bp :!!..!..! ! !! !|||:!!|||:!
++ ++IleGluGluGlyThrProGlyLysLeuLy
66258 : gt.........................agATTGAAGAAGGAACTCCTGGAAAATTGAA : 64135
294 : nValThrTrpGluAspSerThrThrGlyLysGluAspThrGlyThrPheAspThr > : 312
!|||! ! :!!..!!!!||| !.!!:!! ! ! !||| !!:!:!!|||
sValIleAlaLysSerThrThrGlySerGlnThrIleGluGlyGluTyrAsnThr++
64134 : AGTTATAGCTAAATCCACAACTGGCAGTCAGACAATTGAAGGAGAATACAACACTgt. : 64076
313 : >>> Target Intron 9 >>>> ValLeuTrpAlaIleGlyArgValProAspTh : 322
2005 bp |||||| |||:!:||||||! ! !! !||
++ValLeuLeuAlaValGlyArgAspAlaCysTh
64075 : ........................agGTGTTGCTAGCAGTGGGAAGGGATGCATGCAC : 62043
323 : rArgSerLeuAsnLeuGluLysAlaGlyValAspThrSerPro{As} >>>> Targ : 337
||||!.!:!!..!|||!!:|||!.!|||||| ! ! !!:! !{ !}
rArgLysIleGlyLeuAspLysValGlyValLysIleAsnLys{Ly}++
62042 : AAGGAAAATTGGCTTGGACAAAGTCGGAGTGAAGATCAATAAA{AA}gt......... : 61994
338 : et Intron 10 >>>> {p}ThrGlnLysIleLeuValAspSerArgGluAlaThr : 349
1818 bp { }:!! !||||||! !!.!:!!..!..!||| !|||
++{s}SerGlyLysIleProAlaAsnAspGluGluGlnThr
61993 : .................ag{A}TCAGGAAAAATTCCTGCCAATGATGAGGAGCAGACT : 60144
350 : SerValProHisIleTyrAlaIleGlyAspValValGluGlyArgProGluLeuThrP : 369
!:!||||||:!!|||||||||||||||||||||:!!|||! !!:!! !||||||||||
AsnValProTyrIleTyrAlaIleGlyAspValLeuGluAspLysLeuGluLeuThrP
60143 : AATGTCCCTTACATCTATGCCATTGGAGATGTGTTGGAGGACAAGCTGGAACTCACAC : 60084
370 : roIleAlaIleMetAlaGlyArgLeuLeuValGlnArgLeuPheGlyGlySerSerAs : 388
||:!!||||||...|||||||||||||||..!!:!||||||!:!!.!|||:!!!!!
roValAlaIleGlnAlaGlyArgLeuLeuThrArgArgLeuTyrAlaGlyAlaThrLe
60083 : CAGTAGCAATCCAAGCAGGGAGACTGTTGACTCGGAGGCTTTATGCTGGAGCAACCTT : 60027
389 : pLeu >>>> Target Intron 11 >>>> MetAspTyrAspAsnValProThr : 397
! 3283 bp ||||||! ||||||||||||
uLys++ ++CysAspTyrValAsnValProThr
60026 : AAAAgt..........................agTGTGACTATGTGAATGTTCCAACT : 56717
398 : ThrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluGluAlaValA : 417
|||||||||||||||:!!|||||||||..! !|||!!!|||||||||..!|||:!!!
ThrValPheThrProMetGluTyrGlyAlaCysGlyPheSerGluGluArgAlaLeuG
56716 : ACCGTGTTCACTCCAATGGAATATGGAGCCTGTGGATTTTCAGAAGAGAGAGCTTTGG : 56657
418 : laArgHisGlyGlnGluHisValGlu >>>> Target Intron 12 >>>> Va : 426
!!:! !|||:!!.!.:!!:!!||| 1832 bp ||
luLysPheGlyGluAsnAsnIleGlu++ ++Va
56656 : AGAAATTTGGGGAGAATAATATTGAGgt..........................agGT : 54798
427 : lTyrHisAlaHisTyrLysProLeuGluPheThrValAlaGlyArgAspAlaSerGln : 445
|||||||::! !!:! !|||||||||!::|||||| !!||||||||| !!:!:!!
lTyrHisSerPhePheTrpProLeuGluTrpThrValProGlyArgAspAsnAsnLys
54797 : ATACCATAGTTTTTTCTGGCCACTGGAGTGGACAGTCCCAGGCAGAGACAACAACAAA : 54741
446 : CysTyrValLysMetValCysLeuArgGluProPro >>>> Target Intron 1 : 458
||||||!.!|||!!::!!||| !! !:!! ! ! 1599 bp
CysTyrAlaLysIleIleCysAsnIleGlnAspAsn++
54740 : TGCTATGCAAAGATAATTTGCAATATTCAAGATAACgt.................... : 54700
459 : 3 >>>> GlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValTh : 474
:!! !:!!:!!|||!!!||| ! ||||||||||||||||||||||||||
++GluArgIleIleGlyPheHisValLeuGlyProAsnAlaGlyGluValTh
54699 : ......agGAGAGAATTATTGGGTTCCATGTGCTTGGTCCAAATGCTGGAGAAGTTAC : 53055
475 : rGlnGlyPheAlaLeuGlyIleLysCysGlyAlaSerTyrAlaGlnValMetArgThr : 493
||||||||||||| !!.!|||||||||||| !!!! ! ! !:!!:!! !!!|||
rGlnGlyPheAlaAlaAlaIleLysCysGlyLeuThrLysGluLysLeuAspSerThr
53054 : CCAGGGGTTTGCAGCTGCTATCAAGTGTGGACTGACAAAAGAGAAGTTGGACAGCACA : 52998
494 : ValGlyIleHisProThrCysSerGlu >>>> Target Intron 14 >>>> G : 503
:!!||||||||||||..!|||:!!||| 5226 bp
IleGlyIleHisProValCysAlaGlu++ ++I
52997 : ATAGGAATTCATCCAGTCTGTGCAGAGgt..........................agA : 47742
504 : luValValLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGlyCy : 522
! !!..!! ||| !:!:!!!|||||||||||| !:!! !..! !:!!|||||
lePheThrThrLeuSerValThrLysArgSerGlyGlyAsnValValGlnSerGlyCy
47741 : TATTCACCACCCTATCAGTGACAAAGCGTTCTGGTGGAAATGTCGTTCAATCTGGATG : 47685
523 : sUnkGly : 524
| |||
s***Gly
47684 : CTGAGGT : 47677
vulgar: SPP00000138_2.0 8 524 . gi|397458791|gb|JH736710.1|:subseq(380000,120000) 112107 47676 - 1266 M 25 75 S 0 2 5 0 2 I 0 22526 3 0 2 S 1 1 M 1 3 5 0 2 I 0 13051 3 0 2 M 21 63 5 0 2 I 0 4899 3 0 2 M 24 72 S 0 1 5 0 2 I 0 125 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 2006 3 0 2 S 1 2 M 47 141 5 0 2 I 0 118 3 0 2 M 26 78 G 1 0 M 12 36 S 0 2 5 0 2 I 0 2276 3 0 2 S 1 1 M 75 225 5 0 2 I 0 2090 3 0 2 M 28 84 5 0 2 I 0 2001 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1814 3 0 2 S 1 1 M 52 156 5 0 2 I 0 3279 3 0 2 M 36 108 5 0 2 I 0 1828 3 0 2 M 32 96 5 0 2 I 0 1595 3 0 2 M 45 135 5 0 2 I 0 5222 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local gene 47677 112107 1266 - . gene_id 1 ; sequence SPP00000138_2.0 ; gene_orientation +
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 112031 112107 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 112031 112107 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 112029 112030 . - . intron_id 1 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 89501 112030 . - . intron_id 1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 89501 89502 . - . intron_id 0 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 89497 89500 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 89497 89500 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 89495 89496 . - . intron_id 2 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 76442 89496 . - . intron_id 2
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 76442 76443 . - . intron_id 1 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 76379 76441 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 76379 76441 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 76377 76378 . - . intron_id 3 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 71476 76378 . - . intron_id 3
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 71476 71477 . - . intron_id 2 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 71403 71475 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 71403 71475 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 71401 71402 . - . intron_id 4 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 71274 71402 . - . intron_id 4
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 71274 71275 . - . intron_id 3 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 71154 71273 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 71154 71273 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 71152 71153 . - . intron_id 5 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 69144 71153 . - . intron_id 5
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 69144 69145 . - . intron_id 4 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 69001 69143 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 69001 69143 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 68999 69000 . - . intron_id 6 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 68879 69000 . - . intron_id 6
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 68879 68880 . - . intron_id 5 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 68763 68878 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 68763 68878 . - . insertions 0 ; deletions 1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 68761 68762 . - . intron_id 7 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 66483 68762 . - . intron_id 7
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 66483 66484 . - . intron_id 6 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 66257 66482 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 66257 66482 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 66255 66256 . - . intron_id 8 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 64163 66256 . - . intron_id 8
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 64163 64164 . - . intron_id 7 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 64079 64162 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 64079 64162 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 64077 64078 . - . intron_id 9 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 62074 64078 . - . intron_id 9
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 62074 62075 . - . intron_id 8 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 61997 62073 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 61997 62073 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 61995 61996 . - . intron_id 10 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 60179 61996 . - . intron_id 10
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 60179 60180 . - . intron_id 9 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 60022 60178 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 60022 60178 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 60020 60021 . - . intron_id 11 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 56739 60021 . - . intron_id 11
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 56739 56740 . - . intron_id 10 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 56631 56738 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 56631 56738 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 56629 56630 . - . intron_id 12 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 54799 56630 . - . intron_id 12
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 54799 54800 . - . intron_id 11 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 54703 54798 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 54703 54798 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 54701 54702 . - . intron_id 13 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 53104 54702 . - . intron_id 13
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 53104 53105 . - . intron_id 12 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 52969 53103 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 52969 53103 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice5 52967 52968 . - . intron_id 14 ; splice_site "GT"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local intron 47743 52968 . - . intron_id 14
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local splice3 47743 47744 . - . intron_id 13 ; splice_site "AG"
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local cds 47677 47742 . - .
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local exon 47677 47742 . - . insertions 0 ; deletions 0
gi|397458791|gb|JH736710.1|:subseq(380000,120000) exonerate:protein2genome:local similarity 47677 112107 1266 - . alignment_id 1 ; Query SPP00000138_2.0 ; Align 112108 9 75 ; Align 89500 35 3 ; Align 76442 36 63 ; Align 71476 57 72 ; Align 71272 82 117 ; Align 69142 122 141 ; Align 68879 169 78 ; Align 68801 196 36 ; Align 66482 209 225 ; Align 64163 284 84 ; Align 62074 312 75 ; Align 60178 338 156 ; Align 56739 390 108 ; Align 54799 426 96 ; Align 53104 458 135 ; Align 47743 503 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis