Find start end points: [38,43570][501,67031] Score 139888
Recovering alignment: Alignment recovered] Explicit read offe 67%
genewise output
Score 403.63 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397458791|gb|JH736710.1|:subseq(380000,120000) is longer than
allowed name block (15). Truncating
SPP00000138_2.0 39 DYDLLVVGGGSGGLACAK EAAQLGRK
DYDL+V+GGGSGGLA AK EA + +K
DYDLIVIGGGSGGLAAAK EAVKYDKK
gi|397458791|g-76432 gtgcagagggtggcgggaGTATGAC Intron 1 CAGgggatgaa
aaattttgggcggtccca<0-----[76378:71476]-0>actaaaaa
ctcatctagatatgttcg gtcgttga
SPP00000138_2.0 65 VAVVDYVEPSPQGTRW LGGTCVN
V V+DYV P+P GT W LGGTCVN
VMVLDYVTPTPLGTSW G:G[ggt] LGGTCVN
gi|397458791|g-71451 gagcgtgacaccgattGGTAATTT Intron 2 AAGGTcggatga
ttttaatcccctgccg <1-----[71402:71274]-1> tggcgta
ggggctgttttgatag caaatat
SPP00000138_2.0 89 VGCIPKKLMHQAALLGGLIQDAPNYGWEVAQP
VGCIPKKLMHQAALLG ++D+ +GW+ +
VGCIPKKLMHQAALLGQALKDSHKFGWQFTEE
gi|397458791|g-71250 ggtacaataccggtcgcgtagtcatgtctagg
tggtcaattaaccttgactaacaatggatcaa
gctataaggcgatggaacaatccataggtaaa
SPP00000138_2.0 121 PHDWRKMAEAVQNHVKSLNWGHR
H W M EAVQN++ SLNWG+R
V:V[gtc] KHSWETMTEAVQNYIGSLNWGYR
gi|397458791|g-71154 GGTATGGA Intron 3 CAGTCacatgaaagggcatagtcatgta
<1-----[71153:69144]-1> aaggactcactaaatgctaggag
accggtgaattgtttgaacgtta
SPP00000138_2.0 145 VQLQDRKVKYFNIKASFVDEHTVC GV
V L+D KV Y N FV HT+
VALRDNKVTYENAYGEFVGPHTIK AT
gi|397458791|g-69072 ggtagaagatgagtggtggccaaaGTACTGA Intron 4 TAGga
tctgaaatcaaacagattgcacta<0-----[69000:68879]-0>cc
ctgaccgcatgtatagttggcttg aa
SPP00000138_2.0 171 AKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGIT
GKE L +A+ +IIATG RPRY +I G EY I+
NTKGKEKLYTAEKFIIATGERPRY-LNIPGDKEYCIS
gi|397458791|g-68872 aaagagactaggataagaggacct taacggagttaa
acagaaataccaatttccgagcga tatcgaaaagtg
taagagagcaagatttcttagacc gtctacgacctc
SPP00000138_2.0 208 DDIFWLKESPGKTLVVGASYVAL
DD+F L PGKTLVVGASYVAL
S:S[agt] DDLFSLPYCPGKTLVVGASYVAL
gi|397458791|g-68764 AGGTAAAAT Intron 5 CAGTggcttccttcgaacggggttggc
<2-----[68762:66483]-2> aattctcagcgactttgccatct
ctgccgtctaaacgatatcttct
SPP00000138_2.0 232 ECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCA
ECAGFL GIGLD T+M+RSI LRGFDQ+M++ + EHM HG +F++
ECAGFLAGIGLDVTVMVRSILLRGFDQEMANKIGEHMEEHGIKFIKQFV
gi|397458791|g-66412 gtggtcggagtggagagctactagtgcgagaaaggcaggcgaataactg
agcgttcgtgtatctttgctttggtaaatcaatgaataaagtattaatt
attattggttatataggacttaagtcgagacataacgaatgcgttggtg
SPP00000138_2.0 281 PSR VRRLPDGQLQVTWEDSTTGKEDT
P + + G+L+V + +T +
PIK IEEGTPGKLKVIAKSTTGSQTIE
gi|397458791|g-66265 caaGTAAGCC Intron 6 CAGagggacgatagagataagacaag
cta<0-----[66256:64163]-0>taagccgatattcacccggacta
atg taaattaagatatacatctgata
SPP00000138_2.0 307 GTFDT VLWAIGRVPDTRSLNLEKAGV
G ++T VL A+GR TR + L+K GV
GEYNT VLLAVGRDACTRKIGLDKVGV
gi|397458791|g-64093 ggtaaGTAAGTA Intron 7 CAGgtcgggaggtaaaagtgaggg
gaaac<0-----[64078:62074]-0>tttctggacgcgatgtaatgt
aacct ggaagagtacagatcgcacag
SPP00000138_2.0 333 DTSP TQKILVDSREATSVPHIYA
+ + KI + E T+VP+IYA
KINK D:K[aaa] SGKIPANDEEQTNVPYIYA
gi|397458791|g-62010 aaaaAAGTAAGGA Intron 8 CAGAtgaacgagggcaagctatg
ataa <2-----[61996:60179]-2> cgatccaaaaacatcatac
gcta aaattcttgggttctcctc
SPP00000138_2.0 357 IGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL
IGDV+E + ELTP+AI+AGRLL +RL+ G++
IGDVLEDKLELTPVAIQAGRLLTRRLYAGATLK
gi|397458791|g-60120 agggtggacgcacggacggactacactgggata
tgattaaatatcctctacggttcggtacgccta
tatgggcggacaaaacaagaggtggtttaacaa
SPP00000138_2.0 390 MDYDNVPTTVFTPLEYGCVGLSEEEA
DY NVPTTVFTP+EYG G SEE A
CDYVNVPTTVFTPMEYGACGFSEERA
gi|397458791|g-60021 GTAAGCA Intron 9 CAGtgtgagcaagtacagtggtgttggag
<0-----[60021:56739]-0>gaatatcccttcctaagcggtcaagc
tctgttatcgctagatactataagat
SPP00000138_2.0 416 VARHGQEHVE VYHAHYKPLEFTVAGR
+ + G+ ++E VYH+ + PLE+TV GR
LEKFGENNIE VYHSFFWPLEWTVPGR
gi|397458791|g-56660 tgatggaaagGTAAGGT Intron 10 CAGgtcatttccgtagcga
taatgaaata<0-----[56630:54799]-0>taagttgctagctcgg
ggatggtttg actttcgagggacaca
SPP00000138_2.0 442 DASQCYVKMVCLREPP QLVLGLHFLG
D ++CY K++C + + ++G H LG
DNNKCYAKIICNIQDN ERIIGFHVLG
gi|397458791|g-54750 gaaattgaaataacgaGTAAGTA Intron 11 TAGgaaagtcgcg
aaaagacattgataaa<0-----[54702:53104]-0>agttgtattg
cccactagatcttatc gattgctgtt
SPP00000138_2.0 468 PNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE
PNAGEVTQGFA IKCG + ++ T+GIHP C+E
PNAGEVTQGFAAAIKCGLTKEKLDSTIGIHPVCAE
gi|397458791|g-53073 caggggacgtgggaatgcaagatgaaagaccgtgg
cacgatcagtccctaggtcaaatagctgtactgca
attaatcggtattcgtagaagggccaaattactag
//
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>gi|397458791|gb|JH736710.1|:subseq(380000,120000).pep
DYDLIVIGGGSGGLAAAKEAVKYDKKVMVLDYVTPTPLGTSWGLGGTCVNVGCIPKKLMH
QAALLGQALKDSHKFGWQFTEEVKHSWETMTEAVQNYIGSLNWGYRVALRDNKVTYENAY
GEFVGPHTIKATNTKGKEKLYTAEKFIIATGERPRYLNIPGDKEYCISSDDLFSLPYCPG
KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQEMANKIGEHMEEHGIKFIKQF
VPIKIEEGTPGKLKVIAKSTTGSQTIEGEYNTVLLAVGRDACTRKIGLDKVGVKINKKSG
KIPANDEEQTNVPYIYAIGDVLEDKLELTPVAIQAGRLLTRRLYAGATLKCDYVNVPTTV
FTPMEYGACGFSEERALEKFGENNIEVYHSFFWPLEWTVPGRDNNKCYAKIICNIQDNER
IIGFHVLGPNAGEVTQGFAAAIKCGLTKEKLDSTIGIHPVCAE
//
>gi|397458791|gb|JH736710.1|:subseq(380000,120000).[76432:52967].sp
GACTATGACCTAATTGTCATTGGAGGGGGATCTGGAGGTCTGGCTGCTGCCAAGGAGGCT
GTCAAGTATGATAAGAAAGTGATGGTGCTGGACTATGTGACTCCTACTCCTCTGGGAACT
TCATGGGGTCTCGGAGGAACATGTGTAAATGTGGGCTGTATACCTAAAAAATTGATGCAC
CAGGCAGCTTTGCTGGGACAAGCCTTAAAAGATTCCCACAAATTTGGATGGCAGTTTACA
GAAGAAGTCAAACACAGCTGGGAGACTATGACAGAAGCTGTTCAGAATTATATTGGGTCA
CTAAACTGGGGTTATAGAGTCGCTTTGAGAGACAACAAGGTCACATATGAGAATGCATAT
GGAGAGTTTGTTGGGCCGCACACTATTAAGGCAACAAATACAAAAGGGAAAGAGAAACTG
TACACAGCAGAGAAATTTATTATTGCCACTGGTGAAAGGCCACGCTACTTGAATATCCCT
GGAGACAAGGAATACTGCATTAGCAGTGACGATCTGTTCTCCCTGCCTTACTGTCCAGGA
AAAACCCTGGTAGTTGGAGCTTCCTATGTTGCCCTTGAATGTGCTGGATTTCTTGCGGGG
ATTGGTTTAGATGTAACTGTAATGGTGCGATCCATTCTTTTAAGAGGGTTTGACCAGGAA
ATGGCAAACAAAATTGGAGAACACATGGAAGAACATGGGATCAAGTTTATTAAGCAGTTT
GTGCCAATTAAGATTGAAGAAGGAACTCCTGGAAAATTGAAAGTTATAGCTAAATCCACA
ACTGGCAGTCAGACAATTGAAGGAGAATACAACACTGTGTTGCTAGCAGTGGGAAGGGAT
GCATGCACAAGGAAAATTGGCTTGGACAAAGTCGGAGTGAAGATCAATAAAAAATCAGGA
AAAATTCCTGCCAATGATGAGGAGCAGACTAATGTCCCTTACATCTATGCCATTGGAGAT
GTGTTGGAGGACAAGCTGGAACTCACACCAGTAGCAATCCAAGCAGGGAGACTGTTGACT
CGGAGGCTTTATGCTGGAGCAACCTTAAAATGTGACTATGTGAATGTTCCAACTACCGTG
TTCACTCCAATGGAATATGGAGCCTGTGGATTTTCAGAAGAGAGAGCTTTGGAGAAATTT
GGGGAGAATAATATTGAGGTATACCATAGTTTTTTCTGGCCACTGGAGTGGACAGTCCCA
GGCAGAGACAACAACAAATGCTATGCAAAGATAATTTGCAATATTCAAGATAACGAGAGA
ATTATTGGGTTCCATGTGCTTGGTCCAAATGCTGGAGAAGTTACCCAGGGGTTTGCAGCT
GCTATCAAGTGTGGACTGACAAAAGAGAAGTTGGACAGCACAATAGGAATTCATCCAGTC
TGTGCAGAG
//
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise match 76432 52969 403.63 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 76432 76379 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 76378 71476 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 71475 71403 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 71402 71274 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 71273 71154 0.00 - 2 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 71153 69144 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 69143 69001 0.00 - 2 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 69000 68879 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 68878 68763 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 68762 66483 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 66482 66257 0.00 - 1 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 66256 64163 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 64162 64079 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 64078 62074 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 62073 61997 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 61996 60179 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 60178 60022 0.00 - 1 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 60021 56739 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 56738 56631 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 56630 54799 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 54798 54703 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise intron 54702 53104 0.00 - . gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
gi|397458791|gb|JH736710.1|:subseq(380000,120000) GeneWise cds 53103 52969 0.00 - 0 gi|397458791|gb|JH736710.1|:subseq(380000,120000)-genewise-prediction-1
//