C4 Alignment:
------------
Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TR1) # Human (Homo sapiens)
Target: gi|397461694|gb|JH733807.1|:subseq(0,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-4487, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2140
Query range: 58 -> 649
Target range: 71200 -> 41281
59 : LeuGlnAlaTyrIleAspGlyHisSerValValIlePheSerArgSerThrCysThrArg : 78
:!!!:!:!! :!!! !..!||| !!|||:!!:!!||||||!:!||| !||| !! !
ValArgSerLeuValGlySerHisArgValLeuValPheSerLysSerTyrCysProTyr
71200 : GTGCGGTCGCTGGTCGGTTCGCACCGCGTCCTGGTCTTCAGCAAGAGCTACTGCCCCTAC : 71143
79 : CysThrGlu >>>> Target Intron 1 >>>> ValLysLysLeuPheLysSerL : 89
||| !..! 12143 bp ||||||:!!||||||:::|||:
CysLeuArg++ ++ValLysGluLeuPheArgSerM
71142 : TGCCTGCGGgt.........................agGTGAAAGAACTTTTCCGTTCTA : 58967
90 : euCysValProTyrPheValLeuGluLeuAspGlnThr{G} >>>> Target Intro : 102
!! ! :!! !|||!:!!.!|||||||||||| !! !{!} 1585 bp
etGlyLeuGluTyrTyrAlaLeuGluLeuAspValIle{A}++
58966 : TGGGACTAGAGTATTATGCCTTGGAACTTGATGTAATT{G}gt................. : 58925
103 : n 2 >>>> {lu}AspGlyArgAlaLeuGluGlyThrLeuSerGluLeuAlaAlaGluT : 118
{!:}||||||! !::!:!!:!! !..!|||! !|||:!!.!! !:!!!
++{sp}AspGlyProSerIleGlnGlnValLeuMetGluMetThrAsnGlnA
58924 : ........ag{AT}GATGGACCCAGTATTCAGCAAGTGTTAATGGAGATGACTAACCAAA : 57295
119 : hrAspLeuProValValPheValLysGlnArgLysIleGlyGlyHisGlyProThrLeuL : 138
! !:!!||| !|||||||||!!. !! ! ! :!!|||||| !! ! !!||||||:
rgThrValProAsnValPheValAsnGlyThrHisValGlyGlyCysAspAlaThrLeuG
57294 : GGACTGTGCCCAATGTATTTGTGAACGGGACACATGTAGGTGGATGCGATGCAACTCTTC : 57235
139 : ys >>>> Target Intron 3 >>>> AlaTyrGlnGluGlyArgLeuGlnLysLe : 148
!! 2112 bp |||||||||.!.||| !|||||||||||
ln++ ++AlaTyrGlnAsnGlySerLeuGlnLysLe
57234 : AGgt.........................agGCTTACCAGAACGGCTCACTGCAGAAGCT : 55093
149 : uLeuLysMetAsnGlyProGluAspLeuProLysSerTyrAspTyrAspLeuIleIleIl : 168
|||| ||| !!! ! ! !||| !!||||||||||||||||||:!!||
uLeu---------GlySerGlyThrAspValLysProTyrAspTyrAspLeuIleValIl
55092 : TCTC---------GGGTCTGGAACGGATGTAAAGCCATATGATTATGATCTCATTGTTAT : 55042
169 : eGlyGlyGlySerGlyGlyLeuAlaAlaAlaLys >>>> Target Intron 4 >>> : 180
|||||||||||||||||||||||||..!:!!||| 1362 bp
eGlyGlyGlySerGlyGlyLeuAlaCysSerLys++
55041 : TGGTGGTGGCTCTGGTGGACTTGCTTGTTCAAAGgt........................ : 55004
181 : > GluAlaAlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrPro : 198
||||||||| ! ||||||||||||||||||||||||!:!|||..!|||||||||
++GluAlaAlaThrLeuGlyLysLysValMetValLeuAspTyrValValProThrPro
55003 : .agGAAGCTGCTACCTTAGGAAAAAAAGTCATGGTGCTAGATTATGTTGTACCAACACCT : 53590
199 : LeuGlyThrArgTrp{G} >>>> Target Intron 5 >>>> {ly}LeuGlyGly : 207
! !|||||| !|||{|} 1170 bp {||}|||||||||
SerGlyThrSerTrp{G}++ ++{ly}LeuGlyGly
53589 : TCGGGTACCTCCTGG{G}gt.........................ag{GA}CTTGGTGGT : 52393
208 : ThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGly : 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGly
52392 : ACTTGTGTCAACGTAGGCTGCATTCCTAAGAAACTGATGCATCAAGCTGCGCTTTTGGGA : 52333
228 : GlnAlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V} >>>> Ta : 244
|||||||||:!!|||||||||!!.!:!||||||:!! !!!:||| !{|}
GlnAlaLeuLysAspSerArgLysPheGlyTrpGlnTyrAspGluGln{V}++
52332 : CAGGCCCTTAAGGATTCACGTAAATTTGGCTGGCAGTATGATGAGCAA{G}gt....... : 52279
245 : rget Intron 6 >>>> {al}LysHisAspTrpAspArgMetIleGluAlaValGln : 256
1511 bp {||}||||||:!!|||!!:! !|||:!!||||||:!!|||
++{al}LysHisAsnTrpGluThrMetValGluAlaIleGln
52278 : ..................ag{TT}AAACACAACTGGGAAACCATGGTAGAAGCAATTCAG : 50735
257 : AsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValVal : 276
|||:!!||||||||||||||||||||||||||||||:!!||||||||||||! |||..!
AsnTyrIleGlySerLeuAsnTrpGlyTyrArgValSerLeuArgGluLysThrValThr
50734 : AACTATATAGGCTCTCTAAACTGGGGCTACAGGGTGTCTTTAAGAGAGAAAACTGTCACA : 50675
277 : TyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys >>>> Target I : 292
||| |||||||||!.!:!!||||||! !||||||!:!:!!||| 2659
TyrLeuAsnAlaTyrAlaGluPheIleGluProHisLysValLys++
50674 : TACCTCAACGCGTACGCAGAATTTATTGAACCACATAAAGTAAAGgt............. : 50625
293 : ntron 7 >>>> AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgP : 307
bp |||||||||!..||||||:!!|||! !:!!!!!||||||||||
++AlaThrAsnArgLysGlyGlnGluThrTyrHisThrAlaGluArgP
50624 : ............agGCAACAAATAGGAAAGGGCAAGAAACCTATCATACAGCAGAAAGAT : 47923
308 : heLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrC : 327
||:!!:!!||||||||||||||||||||||||||||||||||||||||||||||||||||
heValLeuAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrC
47922 : TTGTCCTAGCCACAGGGGAGAGGCCCCGATATTTGGGTATTCCTGGAGATAAAGAATACT : 47863
328 : ysIleSer{Se} >>>> Target Intron 8 >>>> {r}AspAspLeuPheSerL : 336
|||||!!!{||} 122 bp {|}|||||||||!! ||||
ysIleThr{Se}++ ++{r}AspAspLeuUnkSerL
47862 : GTATTACA{AG}gt.........................ag{T}GATGATCTCTTNTCCC : 47714
337 : euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCysA : 356
|||||||||||||||||||||||||||||||||||||||||!! ||||||||||||||||
euProTyrCysProGlyLysThrLeuValValGlyAlaSerUnkValAlaLeuGluCysA
47713 : TGCCTTACTGCCCTGGCAAAACTCTTGTTGTGGGAGCGTCCTANGTGGCTCTGGAGTGTG : 47654
357 : laGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeuLeuA : 376
||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||
laGlyPheLeuAlaGlyIleGlyLeuAspValSerValMetValArgSerIleLeuLeuA
47653 : CAGGGTTTCTTGCNGGCATTGGTTTGGATGTGTCGGTTATGGTGCGCTCCATCCTTCTTC : 47594
377 : rgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisGlyIleL : 396
||||||||||||||!!:||||||.!.!:!||||||! ||||||||| ||||||:!:|
rgGlyPheAspGlnGluMetAlaGluArgIleGlyAlaHisMetGluThrHisGlyValL
47593 : GAGGTTTTGATCAAGAAATGGCAGAAAGAATAGGTGCTCATATGGAAACCCATGGTGTGA : 47534
397 : ysPheIleArgGlnPheValProIleLys >>>> Target Intron 9 >>>> Va : 406
|||||||||||::!||||||||||||:!! 265 bp :!
ysPheIleArgArgPheValProIleGln+- ++Il
47533 : AATTCATCAGGAGATTTGTACCTATTCAGgc.........................agAT : 47239
407 : lGluGlnIleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnSerThrAsnSe : 426
!|||::!:!:|||! !|||! !||||||||||||!:!|||||||||::!||||||.!..!
eGluArgLeuGluAspGlyMetProGlyArgLeuLysValValAlaArgSerThrGluGl
47238 : TGAAAGGCTGGAAGATGGCATGCCTGGAAGACTGAAAGTGGTAGCAAGGTCTACTGAGGG : 47179
427 : rGluGluIleIleGluGlyGluTyrAsnThr >>>> Target Intron 10 >>>> : 437
!..!!!:|||.!!|||||||||||||||||| 493 bp
ySerAspIlePheGluGlyGluTyrAsnThr++ +
47178 : ATCAGACATTTTTGAAGGAGAGTATAACACTgt..........................a : 46655
438 : ValMetLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyLeuGluThrValGl : 456
|||:!!:!!|||||||||||||||||||||||||||!!.|||||||||!!:! !:!!||
+ValLeuIleAlaIleGlyArgAspAlaCysThrArgAsnIleGlyLeuAspLysIleGl
46654 : gGTTTTGATAGCAATTGGCCGTGATGCATGCACCAGAAACATTGGTTTGGATAAAATCGG : 46596
457 : yValLysIleAsnGlu{Ly} >>>> Target Intron 11 >>>> {s}ThrGlyL : 465
||||!:!|||||||||{:!} 1662 bp {!}!.!||||
yValArgIleAsnGlu{Gl}++ ++{u}AsnGlyL
46595 : GGTCAGAATCAATGAA{GA}gt..........................ag{G}AATGGAA : 44907
466 : ysIleProValThrAspGluGluGlnThrAsnValProTyrIleTyrAlaIleGlyAspI : 485
|||||||||||!:!|||||||||||||||||||||||||||:!!||||||||||||||||
ysIleProValSerAspGluGluGlnThrAsnValProTyrValTyrAlaIleGlyAspI
44906 : AAATACCAGTAAGTGATGAAGAACAAACCAATGTGCCTTATGTCTATGCTATTGGAGATA : 44847
486 : leLeuGluAspLysValGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaG : 505
|||||!!:! |||:!!||||||||||||||||||||||||||||||||||||||||||!
leLeuAspGlyLysLeuGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaA
44846 : TCTTGGATGGAAAACTTGAACTGACCCCAGTTGCCATTCAGGCAGGCAGACTACTAGCTC : 44787
506 : lnArgLeuTyrAlaGlySerThrValLys >>>> Target Intron 12 >>>> C : 515
::||||||||||||||||||:!!:!!||| 261 bp |
rgArgLeuTyrAlaGlySerSerIleLys++ ++C
44786 : GCAGACTTTATGCTGGTAGTTCTATAAAGgt..........................agT : 44496
516 : ysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysGlyL : 535
||||||||! |||||||||||||||||||||||||||||||||||||||..!|||||||
ysAspTyrValAsnValProThrThrValPheThrProLeuGluTyrGlyCysCysGlyL
44495 : GTGATTATGTCAATGTACCAACTACAGTTTTTACTCCTTTGGAATATGGCTGTTGTGGAC : 44436
536 : euSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu >>>> Target : 551
|| !!||||||||||||:!!:!!:!!!:!||||||.!.|||:!:||| 1
euProGluGluLysAlaIleLysGluTyrGlyGluHisAsnLeuGlu++
44435 : TGCCAGAAGAGAAAGCAATTAAAGAATATGGAGAGCATAACTTGGAGgt........... : 44386
552 : Intron 13 >>>> ValTyrHisSerTyrPheTrpProLeuGluTrpThrIleProS : 565
308 bp |||||||||!!!! |||||||||||||||||||||:!!|||!
++ValTyrHisThrLeuPheTrpProLeuGluTrpThrValProA
44385 : ...............agGTTTATCACACTTTGTTCTGGCCACTTGAGTGGACAGTACCCA : 43038
566 : erArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnThrLysAspAsn >>>> : 583
:!||||||||||||! ||||||||||||||||||||||||! ! ! |||
snArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysLeuAlaAsn++
43037 : ACAGAGACAACAATACTTGTTATGCAAAGATTATATGCAACAAACTTGCAAATgt..... : 42982
584 : Target Intron 14 >>>> GluArgValValGlyPheHisValLeuGlyProAsnA : 595
1196 bp .!.||||||:!!|||||||||||||||||||||||||
++AsnArgValIleGlyPheHisValLeuGlyProAsnA
42981 : .....................agAACCGTGTCATTGGATTTCATGTTCTTGGCCCCAATG : 41752
596 : laGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnL : 615
||||||||:!!|||||||||||||||||||||:!!||||||||||||||||||:!!! !|
laGlyGluIleThrGlnGlyPheAlaAlaAlaIleLysCysGlyLeuThrLysGluLeuL
41751 : CTGGTGAAATAACTCAAGGCTTTGCTGCAGCAATAAAATGTGGTCTGACAAAAGAACTGC : 41692
616 : euAspSerThrIleGlyIleHisProValCysAlaGlu >>>> Target Intron 1 : 628
||:!!..!||||||||||||||||||..!||||||||| 306 bp
euAsnGluThrIleGlyIleHisProThrCysAlaGlu++
41691 : TTAATGAAACGATTGGTATACATCCAACATGTGCAGAGgt.................... : 41651
629 : 5 >>>> ValPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnA : 645
||||||||||||:!!!:!:!!|||||| !|||||| !..!||| !|||:
++ValPheThrThrMetAsnIleThrLysSerSerGlyGlnGluIleThrGlnS
41650 : ......agGTGTTCACTACTATGAATATTACAAAATCTTCCGGACAAGAGATTACTCAGA : 41296
646 : laGlyCysUnkGly : 649
:!|||||| |||
erGlyCys***Gly
41295 : GTGGCTGCTGAGGT : 41282
vulgar: SPP00000129_2.0 58 649 . gi|397461694|gb|JH733807.1|:subseq(0,100000) 71200 41281 - 2140 M 23 69 5 0 2 I 0 12139 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1581 3 0 2 S 1 2 M 36 108 5 0 2 I 0 2108 3 0 2 M 11 33 G 3 0 M 27 81 5 0 2 I 0 1358 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1166 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 1507 3 0 2 S 1 2 M 47 141 5 0 2 I 0 2655 3 0 2 M 38 114 S 0 2 5 0 2 I 0 118 3 0 2 S 1 1 M 75 225 5 0 2 I 0 261 3 0 2 M 31 93 5 0 2 I 0 489 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1658 3 0 2 S 1 1 M 52 156 5 0 2 I 0 257 3 0 2 M 36 108 5 0 2 I 0 1304 3 0 2 M 32 96 5 0 2 I 0 1192 3 0 2 M 45 135 5 0 2 I 0 302 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local gene 41282 71200 2140 - . gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation +
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 71132 71200 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 71132 71200 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 71130 71131 . - . intron_id 1 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 58989 71131 . - . intron_id 1
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 58989 58990 . - . intron_id 0 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 58928 58988 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 58928 58988 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 58926 58927 . - . intron_id 2 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 57343 58927 . - . intron_id 2
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 57343 57344 . - . intron_id 1 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 57233 57342 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 57233 57342 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 57231 57232 . - . intron_id 3 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 55121 57232 . - . intron_id 3
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 55121 55122 . - . intron_id 2 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 55007 55120 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 55007 55120 . - . insertions 0 ; deletions 3
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 55005 55006 . - . intron_id 4 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 53645 55006 . - . intron_id 4
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 53645 53646 . - . intron_id 3 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 53572 53644 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 53572 53644 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 53570 53571 . - . intron_id 5 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 52402 53571 . - . intron_id 5
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 52402 52403 . - . intron_id 4 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 52282 52401 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 52282 52401 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 52280 52281 . - . intron_id 6 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 50771 52281 . - . intron_id 6
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 50771 50772 . - . intron_id 5 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 50628 50770 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 50628 50770 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 50626 50627 . - . intron_id 7 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47969 50627 . - . intron_id 7
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47969 47970 . - . intron_id 6 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47853 47968 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47853 47968 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47851 47852 . - . intron_id 8 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47731 47852 . - . intron_id 8
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47731 47732 . - . intron_id 7 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47505 47730 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47505 47730 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47503 47504 . - . intron_id 9 ; splice_site "GC"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 47240 47504 . - . intron_id 9
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 47240 47241 . - . intron_id 8 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 47147 47239 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 47147 47239 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 47145 47146 . - . intron_id 10 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 46654 47146 . - . intron_id 10
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 46654 46655 . - . intron_id 9 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 46577 46653 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 46577 46653 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 46575 46576 . - . intron_id 11 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 44915 46576 . - . intron_id 11
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 44915 44916 . - . intron_id 10 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 44758 44914 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 44758 44914 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 44756 44757 . - . intron_id 12 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 44497 44757 . - . intron_id 12
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 44497 44498 . - . intron_id 11 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 44389 44496 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 44389 44496 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 44387 44388 . - . intron_id 13 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 43081 44388 . - . intron_id 13
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 43081 43082 . - . intron_id 12 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 42985 43080 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 42985 43080 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 42983 42984 . - . intron_id 14 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 41789 42984 . - . intron_id 14
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 41789 41790 . - . intron_id 13 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 41654 41788 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 41654 41788 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice5 41652 41653 . - . intron_id 15 ; splice_site "GT"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local intron 41348 41653 . - . intron_id 15
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local splice3 41348 41349 . - . intron_id 14 ; splice_site "AG"
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local cds 41282 41347 . - .
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local exon 41282 41347 . - . insertions 0 ; deletions 0
gi|397461694|gb|JH733807.1|:subseq(0,100000) exonerate:protein2genome:local similarity 41282 71200 2140 - . alignment_id 1 ; Query SPP00000129_2.0 ; Align 71201 59 69 ; Align 58989 82 60 ; Align 57341 103 108 ; Align 55121 139 33 ; Align 55088 153 81 ; Align 53645 180 72 ; Align 52400 205 117 ; Align 50769 245 141 ; Align 47969 292 114 ; Align 47730 331 225 ; Align 47240 406 93 ; Align 46654 437 75 ; Align 44914 463 156 ; Align 44497 515 108 ; Align 43081 551 96 ; Align 41789 583 135 ; Align 41348 628 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis