Find start end points: [58,28802][646,58712] Score 259688
Recovering alignment: Alignment recovered] Explicit read offe 90%%
genewise output
Score 749.30 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397461694|gb|JH733807.1|:subseq(0,100000) is longer than
allowed name block (15). Truncating
SPP00000129_2.0 59 LQAYIDGHSVVIFSRSTCTRCTE VKK
+++ + H V++FS+S C C VK+
VRSLVGSHRVLVFSKSYCPYCLR VKE
gi|397461694|g-71200 gctcggtccgcgtaaattcttccGTGAGCG Intron 1 CAGgag
tgcttgcagttttgagagcagtg<0-----[71131:58989]-0>taa
ggggctgcccgcccgccccccgg gaa
SPP00000129_2.0 85 LFKSLCVPYFVLELDQT DGRALE
LF+S+ + Y+ LELD DG +++
LFRSMGLEYYALELDVI E:D[gat] DGPSIQ
gi|397461694|g-58979 ctctagcgttgtgcggaGGTAAGTA Intron 2 CAGATggcaac
ttgctgtaaactatatt <1-----[58927:57343]-1> agcgta
tcttgaagttcgattat tacttg
SPP00000129_2.0 109 GTLSELAAETDLPVVFVKQRKIGGHGPTLK
L E+ + +P VFV +GG TL+
QVLMEMTNQRTVPNVFVNGTHVGGCDATLQ
gi|397461694|g-57322 cgtagaaacaagcagtgagacgggtggacc
atttatcaagctcatttagcatgggaccta
agagggtcagtgctatgcgatatactattg
SPP00000129_2.0 139 AYQEGRLQKLLKMNGPEDLPKSYDYD
AYQ G LQKLL G K YDYD
AYQNGSLQKLL---GSGTDVKPYDYD
gi|397461694|g-57232 GTAACTT Intron 3 CAGgtcagtccacc gtgaggactgtg
<0-----[57232:55121]-0>caaagctaatt gcgcatacaaaa
tcgccagggtc gtagtagatttt
SPP00000129_2.0 165 LIIIGGGSGGLAAAK EAAQYGKKVMV
LI+IGGGSGGLA +K EAA GKKVMV
LIVIGGGSGGLACSK EAATLGKKVMV
gi|397461694|g-55051 cagagggtggcgttaGTATGTC Intron 4 CAGgggatgaagag
ttttgggcggtcgca<0-----[55006:53645]-0>accctgaattt
ctttttcttatttag attcaaaacgg
SPP00000129_2.0 191 LDFVTPTPLGTRW LGGTCVNVGC
LD+V PTP GT W LGGTCVNVGC
LDYVVPTPSGTSW G:G[gga] LGGTCVNVGC
gi|397461694|g-53611 cgtggcactgattGGTAAGGC Intron 5 CAGGAcggatgaggt
taattccccgccg <1-----[53571:52402]-1> tggcgtatgg
atttaaatgtccg tttttccacc
SPP00000129_2.0 215 IPKKLMHQAALLGQALQDSRNYGWKVEET
IPKKLMHQAALLGQAL+DSR +GW+ +E
IPKKLMHQAALLGQALKDSRKFGWQYDEQ
gi|397461694|g-52369 acaacaccggctgcgcagtcatgtctggc
tcaattaaccttgactaacgatggaaaaa
ttgaggtatgtgagctgtatatcggttga
SPP00000129_2.0 244 KHDWDRMIEAVQNHIGSLNWGYR
KH+W+ M+EA+QN+IGSLNWGYR
V:V[gtt] KHNWETMVEAIQNYIGSLNWGYR
gi|397461694|g-52282 GGTTGGTA Intron 6 CAGTTacatgaagggacatagtcatgta
<1-----[52281:50771]-1> aaagacttactaaatgctaggag
accgacgaaatgctactacgccg
SPP00000129_2.0 268 VALREKKVVYENAYGQFIGPHRIK AT
V+LREK V Y NAY +FI PH++K AT
VSLREKTVTYLNAYAEFIEPHKVK AT
gi|397461694|g-50699 gttagaagatcagtggtagccagaGTATATG Intron 7 CAGga
tctgaactcatacacattacaata<0-----[50627:47969]-0>cc
gtaagatcacccgcaattaataag aa
SPP00000129_2.0 294 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS
N KG+E ++AERF++ATGERPRYLGIPGDKEYCI+
NRKGQETYHTAERFVLATGERPRYLGIPGDKEYCIT
gi|397461694|g-47962 aaagcgatcaggatgcgaggaccttgacggagttaa
agagaacaaccagtttccgagcgatgtcgaaaagtc
tgagaacttaaaatcacagggcatgtttataactta
SPP00000129_2.0 330 DDLFSLPYCPGKTLVVGASYVAL
DDL+SLPYCPGKTLVVGAS+VAL
S:S[agt] DDLxSLPYCPGKTLVVGASxVAL
gi|397461694|g-47854 AGGTGAGAT Intron 8 TAGTggcttccttcgaacggggttggc
<2-----[47852:47731]-2> aattctcagcgactttgccatct
ttcNcgtcctcatttgagcNgtg
SPP00000129_2.0 354 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV
ECAGFL+GIGLDV+VMVRSILLRGFDQ+MA +IG HME HG+KFIR+FV
ECAGFLxGIGLDVSVMVRSILLRGFDQEMAERIGAHMETHGVKFIRRFV
gi|397461694|g-47660 gtggtcggagtggtgagctacccgtgcgaggaaggcagacggataaatg
agcgttcgtgtatctttgctttggtaaatcagtgcatacagtattggtt
gtagttNcttgtggtggcccttatttaagaaaatttgacttgaccgata
SPP00000129_2.0 403 PIK---- VEQIEAGTPGRLRVVAQST
PI+ +E++E G PGRL+VVA+ST
PIQASAF IERLEDGMPGRLKVVARST
gi|397461694|g-47513 cacgagtGTTTTAC Intron 9 CAGagacgggacgacagggata
ctacgct<0-----[47492:47240]-0>tagtaagtcggtattcgcc
ttgatat taggatcgtaagagaagtt
SPP00000129_2.0 425 NSEEIIEGEYNT VMLAIGRDACTRKI
+I+EGEYNT V++AIGRDACTR I
EGSDIFEGEYNT VLIAIGRDACTRNI
gi|397461694|g-47182 ggtgatgggtaaGTAAGCA Intron 10 TAGgtagagcggtaaaa
agcattagaaac<0-----[47146:46654]-0>tttctggacgcgat
gaacttaagtct tgaatcttaccact
SPP00000129_2.0 451 GLETVGVKINE TGKIPVTDEEQT
GL+ +GV+INE GKIPV+DEEQT
GLDKIGVRINE K:E[gag] NGKIPVSDEEQT
gi|397461694|g-46611 gtgaaggaaagGAGTGAGTA Intron 11 AAGGagaacgagggca
gtaatgtgtaa <2-----[46576:44915]-2> agatctgaaaac
tgtacgcacta taaaaattaaac
SPP00000129_2.0 475 NVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK
NVPY+YAIGDIL+ K+ELTPVAIQAGRLLA+RLYAGS++K
NVPYVYAIGDILDGKLELTPVAIQAGRLLARRLYAGSSIK
gi|397461694|g-44877 agctgtgaggatggacgcacggacggaccgcactggataa
atcatactgattagatatcctctacggttcggtacggcta
tgttctttatcgtaatagcatctgacaaatcattttttag
SPP00000129_2.0 515 CDYENVPTTVFTPLEYGACGLSEEKA
CDY NVPTTVFTPLEYG CGL EEKA
CDYVNVPTTVFTPLEYGCCGLPEEKA
gi|397461694|g-44757 GTAAGAT Intron 12 CAGtgtgagcaagtactgtgttgccggag
<0-----[44757:44497]-0>gaatatcccttcctaaggggtcaaac
tttctaatattttgatcttagaagaa
SPP00000129_2.0 541 VEKFGEENIE VYHSYFWPLEWTIPSR
++++GE N+E VYH+ FWPLEWT+P+R
IKEYGEHNLE VYHTLFWPLEWTVPNR
gi|397461694|g-44418 aagtggcatgGTGAGAA Intron 13 TAGgtcatttccgtagcaa
taaagaaata<0-----[44388:43081]-0>taacttgctagctcag
taatagtcgg ttctgcgatggaacca
SPP00000129_2.0 567 DNNKCYAKIICNTKDN ERVVGFHVLG
DNN CYAKIICN N RV+GFHVLG
DNNTCYAKIICNKLAN NRVIGFHVLG
gi|397461694|g-43032 gaaattgaaataacgaGTACGTA Intron 14 AAGacgagtcgcg
aaacgacattgaatca<0-----[42984:41789]-0>agttgtattg
ccttttagtaccatat ctctattttc
SPP00000129_2.0 593 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE
PNAGE+TQGFAAA+KCGLTK+ L+ TIGIHP CAE
PNAGEITQGFAAAIKCGLTKELLNETIGIHPTCAE
gi|397461694|g-41758 cagggaacgtgggaatgcaagccagaagaccatgg
cacgatcagtccctaggtcaattaactgtaccgca
ctttaatacttaaaattgaaagttagttataatag
SPP00000129_2.0 628 VFTTLSVTKRSGASILQAGC
VFTT+++TK SG I Q+GC
VFTTMNITKSSGQEITQSGC
gi|397461694|g-41653 GTAAGGG Intron 15 CAGgtaaaaaaattgcgaacagt
<0-----[41653:41348]-0>ttcctatcaccgaatcaggg
gcttgttaatcaagttgtcc
//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a E in phase 2 intron
>gi|397461694|gb|JH733807.1|:subseq(0,100000).pep
VRSLVGSHRVLVFSKSYCPYCLRVKELFRSMGLEYYALELDVIDDGPSIQQVLMEMTNQR
TVPNVFVNGTHVGGCDATLQAYQNGSLQKLLGSGTDVKPYDYDLIVIGGGSGGLACSKEA
ATLGKKVMVLDYVVPTPSGTSWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRKFGWQYD
EQVKHNWETMVEAIQNYIGSLNWGYRVSLREKTVTYLNAYAEFIEPHKVKATNRKGQETY
HTAERFVLATGERPRYLGIPGDKEYCITSDDLxSLPYCPGKTLVVGASxVALECAGFLxG
IGLDVSVMVRSILLRGFDQEMAERIGAHMETHGVKFIRRFVPIQASAFIERLEDGMPGRL
KVVARSTEGSDIFEGEYNTVLIAIGRDACTRNIGLDKIGVRINEENGKIPVSDEEQTNVP
YVYAIGDILDGKLELTPVAIQAGRLLARRLYAGSSIKCDYVNVPTTVFTPLEYGCCGLPE
EKAIKEYGEHNLEVYHTLFWPLEWTVPNRDNNTCYAKIICNKLANNRVIGFHVLGPNAGE
ITQGFAAAIKCGLTKELLNETIGIHPTCAEVFTTMNITKSSGQEITQSGC
//
>gi|397461694|gb|JH733807.1|:subseq(0,100000).[71200:41286].sp
GTGCGGTCGCTGGTCGGTTCGCACCGCGTCCTGGTCTTCAGCAAGAGCTACTGCCCCTAC
TGCCTGCGGGTGAAAGAACTTTTCCGTTCTATGGGACTAGAGTATTATGCCTTGGAACTT
GATGTAATTGATGATGGACCCAGTATTCAGCAAGTGTTAATGGAGATGACTAACCAAAGG
ACTGTGCCCAATGTATTTGTGAACGGGACACATGTAGGTGGATGCGATGCAACTCTTCAG
GCTTACCAGAACGGCTCACTGCAGAAGCTTCTCGGGTCTGGAACGGATGTAAAGCCATAT
GATTATGATCTCATTGTTATTGGTGGTGGCTCTGGTGGACTTGCTTGTTCAAAGGAAGCT
GCTACCTTAGGAAAAAAAGTCATGGTGCTAGATTATGTTGTACCAACACCTTCGGGTACC
TCCTGGGGACTTGGTGGTACTTGTGTCAACGTAGGCTGCATTCCTAAGAAACTGATGCAT
CAAGCTGCGCTTTTGGGACAGGCCCTTAAGGATTCACGTAAATTTGGCTGGCAGTATGAT
GAGCAAGTTAAACACAACTGGGAAACCATGGTAGAAGCAATTCAGAACTATATAGGCTCT
CTAAACTGGGGCTACAGGGTGTCTTTAAGAGAGAAAACTGTCACATACCTCAACGCGTAC
GCAGAATTTATTGAACCACATAAAGTAAAGGCAACAAATAGGAAAGGGCAAGAAACCTAT
CATACAGCAGAAAGATTTGTCCTAGCCACAGGGGAGAGGCCCCGATATTTGGGTATTCCT
GGAGATAAAGAATACTGTATTACAAGTGATGATCTCTTNTCCCTGCCTTACTGCCCTGGC
AAAACTCTTGTTGTGGGAGCGTCCTANGTGGCTCTGGAGTGTGCAGGGTTTCTTGCNGGC
ATTGGTTTGGATGTGTCGGTTATGGTGCGCTCCATCCTTCTTCGAGGTTTTGATCAAGAA
ATGGCAGAAAGAATAGGTGCTCATATGGAAACCCATGGTGTGAAATTCATCAGGAGATTT
GTACCTATTCAGGCAAGTGCATTTATTGAAAGGCTGGAAGATGGCATGCCTGGAAGACTG
AAAGTGGTAGCAAGGTCTACTGAGGGATCAGACATTTTTGAAGGAGAGTATAACACTGTT
TTGATAGCAATTGGCCGTGATGCATGCACCAGAAACATTGGTTTGGATAAAATCGGGGTC
AGAATCAATGAAGAGAATGGAAAAATACCAGTAAGTGATGAAGAACAAACCAATGTGCCT
TATGTCTATGCTATTGGAGATATCTTGGATGGAAAACTTGAACTGACCCCAGTTGCCATT
CAGGCAGGCAGACTACTAGCTCGCAGACTTTATGCTGGTAGTTCTATAAAGTGTGATTAT
GTCAATGTACCAACTACAGTTTTTACTCCTTTGGAATATGGCTGTTGTGGACTGCCAGAA
GAGAAAGCAATTAAAGAATATGGAGAGCATAACTTGGAGGTTTATCACACTTTGTTCTGG
CCACTTGAGTGGACAGTACCCAACAGAGACAACAATACTTGTTATGCAAAGATTATATGC
AACAAACTTGCAAATAACCGTGTCATTGGATTTCATGTTCTTGGCCCCAATGCTGGTGAA
ATAACTCAAGGCTTTGCTGCAGCAATAAAATGTGGTCTGACAAAAGAACTGCTTAATGAA
ACGATTGGTATACATCCAACATGTGCAGAGGTGTTCACTACTATGAATATTACAAAATCT
TCCGGACAAGAGATTACTCAGAGTGGCTGC
//
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise match 71200 41288 754.29 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 71200 71132 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 71131 58989 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 58988 58928 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 58927 57343 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 57342 57233 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 57232 55121 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 55120 55007 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 55006 53645 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 53644 53572 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 53571 52402 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 52401 52282 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 52281 50771 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 50770 50628 0.00 - 2 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 50627 47969 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47968 47853 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47852 47731 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47730 47493 0.00 - 1 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47492 47240 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 47239 47147 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 47146 46654 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 46653 46577 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 46576 44915 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 44914 44758 0.00 - 1 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 44757 44497 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 44496 44389 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 44388 43081 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 43080 42985 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 42984 41789 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 41788 41654 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise intron 41653 41348 0.00 - . gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
gi|397461694|gb|JH733807.1|:subseq(0,100000) GeneWise cds 41347 41288 0.00 - 0 gi|397461694|gb|JH733807.1|:subseq(0,100000)-genewise-prediction-1
//