Find start end points: [17,44671][84,47888] Score 19541
Recovering alignment: Alignment recovered] Explicit read offe 57%

genewise output
Score 56.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|397461887|gb|JH733614.1|:subseq(500000,100000) is longer than
allowed name block (15). Truncating

SPP00000124_2.0   18 KYLQLKKKLEDEFPGRLDI                       CGEGTPQ 
                     +Y QL+ +LE  FPG+L+I                         EGT + 
                     QYRQLRLELESRFPGKLEI                       SSEGTRE 
gi|397461887|gb44670 ctcccccgcgaatcgacgaGTGAGTA  Intron 1   CAGaaggacg 
                     aagatgtataggtcgatat<0-----[44727:45685]-0>ggagcga 
                     gtagcggacacgcacggga                       ctggttg 


SPP00000124_2.0   44 ATGFFEVMVAGKLIHSKK                       KGDGYVDT 
                     ATG+FEV V GKL+HSKK                        GDG+VD  
                     ATGWFEVSVGGKLVHSKK                       NGDGFVDD 
gi|397461887|gb45707 gagttggtgggacgctaaGTAAGCG  Intron 2   CAGagggtggg 
                     ccggtatctggattacaa<0-----[45761:47817]-0>agagttaa 
                     caagtagacacgggttag                       tctctgtc 


SPP00000124_2.0   70 ESKFLKLVAAIKAALA                                  
                       K+ K+  AIK ALA                                  
                     NDKLDKIFTAIKEALA                                  
gi|397461887|gb47842 agacgaatagaaggcg                                  
                     aaataattcctaactc                                  
                     ccgtcgctgccagtga                                  


//
>gi|397461887|gb|JH733614.1|:subseq(500000,100000).pep (BUENAAAA)
QYRQLRLELESRFPGKLEISSEGTREATGWFEVSVGGKLVHSKKNGDGFVDDNDKLDKIF
TAIKEALA
//
>gi|397461887|gb|JH733614.1|:subseq(500000,100000).[44670:47889].sp
CAGTATCGACAGCTCCGGCTGGAACTCGAAAGCAGGTTCCCAGGCAAGCTGGAGATAAGC
AGTGAGGGGACTCGTGAGGCCACAGGATGGTTTGAAGTGTCAGTCGGAGGCAAGCTGGTG
CATTCTAAAAAGAATGGCGATGGCTTTGTGGATGACAACGACAAGCTTGACAAGATCTTT
ACGGCCATCAAAGAGGCTCTGGCA
//
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	match	44670	47889	56.38	+	.	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	cds	44670	44726	0.00	+	0	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	intron	44727	45685	0.00	+	.	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	cds	45686	45760	0.00	+	0	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	intron	45761	47817	0.00	+	.	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
gi|397461887|gb|JH733614.1|:subseq(500000,100000)	GeneWise	cds	47818	47889	0.00	+	0	gi|397461887|gb|JH733614.1|:subseq(500000,100000)-genewise-prediction-1
//