Find start end points: [0,37680][194,45733] Score 115921
Recovering alignment: Alignment recoveredExplicit read offffe 89%

genewise output
Score 334.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397463993|gb|JH731508.1|:subseq(490000,100000) is longer than
allowed name block (15). Truncating

SPP00000106_2.0    1 MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     + LLLLL VAA+A + + A+   GG+P+K+L+M YATGPLLKFQI     
                     LALLLLLAVAAAAGLSAAAAGEPGGLPAKKLRMAYATGPLLKFQI     
gi|397463993|g-62322 cgcccccgggggggcaggggggcggccgaaccagtgagcccatca     
                     tctttttctccccgtgccccgacggtccaatgtcaccgcttatat     
                     ggggggcgggggctgcggggcggcgggcgggcgccccgggcgcgc     


SPP00000106_2.0   46                           VSXGYRRVFEEYMRVISQRYPDI 
                                                     RVFEEYMRVISQRYPDI 
                                C:W[tgg]       ------RVFEEYMRVISQRYPDI 
gi|397463993|g-62187 TGGTGCGTG  Intron 1   CAGG      cgtggtacgaacctcga 
                       <2-----[62185:58269]-2>       gttaaatgttgagacat 
                                                     ggtggcggttcggcacc 


SPP00000106_2.0   70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLS+FK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSIFK 
gi|397463993|g-58216 cagggatccccatAGGTATGTA  Intron 2   TAGAcagttctata 
                     gtagaaatcacta  <2-----[58175:57237]-2> atccttctta 
                     ctaagcctcatat                          caaccgacca 


SPP00000106_2.0   94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
gi|397463993|g-57205 cgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacatttcgtcctctcgatatcgggcaatg                  


SPP00000106_2.0  126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
gi|397463993|g-57109 GTACATG  Intron 3   TAGgtgtaagttcaaaagactataggtga 
                     <0-----[57109:55124]-0>tacgttttttgattaaagtccgctat 
                                            ctttggtctgccgtgtgtgaatatga 


SPP00000106_2.0  152 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
gi|397463993|g-55045 ataGGTGAGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[55035:54389]-1>  tctgcatacgatcctaatta 
                     tgt                          taggtgggttcttcggatca 


SPP00000106_2.0  176 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHM+S+PHHRS                              
                     ILDNEMKLNVHMESMPHHRS                              
gi|397463993|g-54326 acgagaacagcagtacccct                              
                     ttaaatatatatactcaagc                              
                     ttttagactgcggagcttaa                              


//
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>gi|397463993|gb|JH731508.1|:subseq(490000,100000).pep
LALLLLLAVAAAAGLSAAAAGEPGGLPAKKLRMAYATGPLLKFQIWRVFEEYMRVISQRY
PDIRIEGENYLPQPIYRHIASFLSIFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV
YACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVH
MESMPHHRS
//
>gi|397463993|gb|JH731508.1|:subseq(490000,100000).[62322:54265].sp
CTGGCGCTGCTGCTGCTGCTCGCGGTGGCGGCGGCGGCCGGTCTGAGCGCGGCGGCGGCG
GGCGAGCCGGGCGGGCTGCCGGCCAAGAAGCTGCGCATGGCCTACGCCACCGGGCCGCTG
CTCAAGTTCCAGATCTGGCGGGTGTTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTAC
CCAGACATCCGCATTGAAGGAGAGAACTACCTTCCCCAACCTATATATAGACACATAGCA
TCCTTCCTGTCAATCTTCAAACTAGTATTAATAGGCTTAATTATTGTTGGCAAGGATCCC
TTCGCTTTCTTTGGCATGCAAGCTCCAAGTATCTGGCAGTGGGGCCAAGAAAATAAGGTC
TATGCTTGTATGATGGTTTTCTTTCTGAGCAACATGATTGAGAATCAGTGTATGTCAACA
GGTGCATTTGAGATAACTTTGAATGATGTTCCAGTGTGGTCTAAGCTGGAGTCTGGTCAC
CTTCCTTCCATGCAGCAACTTGTCCAAATTCTTGATAATGAAATGAAACTCAATGTGCAC
ATGGAGTCAATGCCCCATCATCGATCA
//
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	match	62322	54267	339.47	-	.	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	cds	62322	62186	0.00	-	0	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	intron	62185	58269	0.00	-	.	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	cds	58268	58176	0.00	-	1	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	intron	58175	57237	0.00	-	.	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	cds	57236	57110	0.00	-	1	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	intron	57109	55124	0.00	-	.	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	cds	55123	55036	0.00	-	0	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	intron	55035	54389	0.00	-	.	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
gi|397463993|gb|JH731508.1|:subseq(490000,100000)	GeneWise	cds	54388	54267	0.00	-	2	gi|397463993|gb|JH731508.1|:subseq(490000,100000)-genewise-prediction-1
//