Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/SELS.fa -t gi|397460072|gb|JH735429.1|subseq.fa -E]
Hostname: [ws101060]
** (process:3142): WARNING **: Exhaustively generating suboptimal alignments will be VERY SLOW
C4 Alignment:
------------
Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens)
Target: gi|397460072|gb|JH735429.1|:subseq(99000,200000) Alligator mississippiensis unplaced genomic scaffold scaffold-7161, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 572
Query range: 8 -> 189
Target range: 185593 -> 50008
9 : SerAlaArgProAlaLeuGluThrGlu{G} >>>> Target Intron 1 >>>> : 18
!:!||| !|||..!|||.!. !:!!{|} 47046 bp
AsnAlaSerProCysLeuHisHisGln{G}++ +
185593 : AATGCCTCACCTTGCCTGCATCACCAA{G}gt.........................a : 138521
19 : {ly}LeuArgPhe{Le} >>>> Target Intron 2 >>>> {u}HisThrTh : 25
{||}:!!!:!|||{ } 16640 bp {!}||||||
+{ly}IleLysPhe{Ar}++ ++{g}HisThrAr
138520 : g{GT}ATCAAATTT{AG}gt.........................ag{G}CATACCCG : 121859
26 : r{V} >>>> Target Intron 3 >>>> {al}GlySerLeuLeuAlaThrTyr : 33
!{|} 65784 bp {||}|||:!!||||||:!!.!!|||
g{V}++ ++{al}GlyAlaLeuLeuSerAlaTyr
121858 : G{G}gt.........................ag{TG}GGCGCGCTGCTGTCGGCCTAC : 56051
34 : GlyTrpTyrIleValPheSerCysIleLeuLeuTyrValValPheGlnLysLeuSerA : 53
|||||||||:!::!!.!!:!!|||:!! !:!!|||:!!:!! ! ||||||:!!|||!
GlyTrpTyrLeuLeuLeuAlaCysValAlaIleTyrLeuLeuValGlnLysValSerG
56050 : GGCTGGTACCTGCTGCTCGCCTGCGTCGCCATCTACCTGCTCGTGCAGAAGGTGTCCG : 55991
54 : laArgLeuArgAlaLeuArgGlnArgGlnLeuAspArgAlaAlaAlaAlaVal{G} : 71
!!!! !||||||! !|||!:!!!!::!! !|||! ! !!!.!||||||!.!{|}
luSerAlaArgAlaArgArgArgSerArgProAspProProGlyAlaAlaAla{G}++
55990 : AGAGCGCCCGAGCCCGGAGACGGAGCAGGCCGGACCCGCCAGGGGCGGCCGCA{G}gt : 55936
72 : >>>> Target Intron 4 >>>> {lu}ProAspValValValLysArgGlnGlu : 80
2059 bp {||}||||||!.!||||||!:!|||||||||
++{lu}ProAspAlaValValArgArgGlnGlu
55935 : .........................ag{AG}CCTGATGCGGTGGTGAGGCGGCAGGAA : 53851
81 : AlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsnAlaGlnValGluLysH : 100
||||||||||||||||||||||||||||||||||||||||||||||||!.!||||||:
AlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsnAlaGlnAlaGluLysT
53850 : GCCCTGGCAGCAGCTCGTCTAAAGATGCAAGAAGAATTGAATGCACAAGCAGAAAAAT : 53791
101 : isLysGluLysLeuLysGln >>>> Target Intron 5 >>>> LeuGluGlu : 109
!!|||||||||! !!:!:!! 1342 bp |||||||||
yrLysGluLysGlnArgGlu++ ++LeuGluGlu
53790 : ACAAAGAGAAACAAAGAGAGgt.........................agCTTGAAGAA : 52422
110 : GluLysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluGlyLysSerTyrL : 129
|||||||||||||||||||||! !||||||!!:|||||||||||||||||||||||||
GluLysArgArgGlnLysIleAlaMetTrpGluSerMetGlnGluGlyLysSerTyrL
52421 : GAGAAAAGAAGGCAGAAGATAGCAATGTGGGAGAGCATGCAGGAAGGAAAAAGCTATA : 52362
130 : ysGlyAsnAlaLysLysProGln >>>> Target Intron 6 >>>> GluGlu : 138
|||||||| !||| ! !||| 157 bp :!!|||
ysGlyAsnLeuLysLeuAsnGln++ ++GlnGlu
52361 : AAGGAAATCTGAAGCTGAACCAGgt.........................agCAAGAA : 52178
139 : AspSerProGlyProSerThrSerSer<->ValLeuLysArgLysSerAspArgLysP : 157
:!! !!.!!||||||||||||||| |||! !|||! !||| !!|||!:!||||
ThrAlaSerSerProSerThrSerSerAlaValProLysProLysProAspLysLysP
52177 : ACAGCATCCAGCCCTTCCACCTCATCAGCAGTCCCAAAGCCAAAGCCAGACAAGAAGC : 52118
158 : roLeuArgGlyGly{G} >>>> Target Intron 7 >>>> {ly}TyrAsnPr : 165
||||||||||||||{|} 2011 bp {||}||||||||
roLeuArgGlyGly{G}++ ++{ly}TyrAsnPr
52117 : CTCTGCGTGGAGGT{G}gt.........................ag{GT}TATAATCC : 50083
166 : oLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGlyArgArgGlyProSer : 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
oLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGlyArgArgGlyProSer
50082 : TTTGTCTGGAGAAGGTGGTGGAGCCTGCTCTTGGAGACCGGGACGCAGAGGCCCATCT : 50026
185 : SerGlyGlyUnkGly : 189
:!!|||||| |||
AlaGlyGly***Gly
50025 : GCAGGTGGATGAGGC : 50009
vulgar: SPP00000100_2.0 8 189 . gi|397460072|gb|JH735429.1|:subseq(99000,200000) 185593 50008 - 572 M 9 27 S 0 1 5 0 2 I 0 47042 3 0 2 S 1 2 M 3 9 S 0 2 5 0 2 I 0 16636 3 0 2 S 1 1 M 3 9 S 0 1 5 0 2 I 0 65780 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 2055 3 0 2 S 1 2 M 35 105 5 0 2 I 0 1338 3 0 2 M 30 90 5 0 2 I 0 153 3 0 2 M 11 33 G 0 3 M 14 42 S 0 1 5 0 2 I 0 2007 3 0 2 S 1 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local gene 50009 185593 572 - . gene_id 1 ; sequence SPP00000100_2.0 ; gene_orientation +
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 185566 185593 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 185566 185593 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 185564 185565 . - . intron_id 1 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 138520 185565 . - . intron_id 1
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 138520 138521 . - . intron_id 0 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 138507 138519 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 138507 138519 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 138505 138506 . - . intron_id 2 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 121867 138506 . - . intron_id 2
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 121867 121868 . - . intron_id 1 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 121856 121866 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 121856 121866 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 121854 121855 . - . intron_id 3 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 56072 121855 . - . intron_id 3
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 56072 56073 . - . intron_id 2 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 55937 56071 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 55937 56071 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 55935 55936 . - . intron_id 4 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 53878 55936 . - . intron_id 4
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 53878 53879 . - . intron_id 3 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 53771 53877 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 53771 53877 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 53769 53770 . - . intron_id 5 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 52429 53770 . - . intron_id 5
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 52429 52430 . - . intron_id 4 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 52339 52428 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 52339 52428 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 52337 52338 . - . intron_id 6 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 52182 52338 . - . intron_id 6
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 52182 52183 . - . intron_id 5 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 52103 52181 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 52103 52181 . - . insertions 3 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 52101 52102 . - . intron_id 7 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 50092 52102 . - . intron_id 7
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 50092 50093 . - . intron_id 6 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 50009 50091 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 50009 50091 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local similarity 50009 185593 572 - . alignment_id 1 ; Query SPP00000100_2.0 ; Align 185594 9 27 ; Align 138518 19 9 ; Align 121866 23 9 ; Align 56070 27 132 ; Align 53876 72 105 ; Align 52429 107 90 ; Align 52182 137 33 ; Align 52146 148 42 ; Align 50090 163 81
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens)
Target: gi|397460072|gb|JH735429.1|:subseq(99000,200000) Alligator mississippiensis unplaced genomic scaffold scaffold-7161, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 102
Query range: 5 -> 174
Target range: 168315 -> 2792
6 : GluSerLeuSerAlaArgProAlaLeuGluThrGluGlyLeuArgPheLeuHisThrT : 25
..!|||:!!..! !!||| !! !!||| !!.!...!||||||! !! ! !|||
ArgSerMetGlnProArgAlaProLeuProProHisSerLeuArgCysCysIleThrP
168315 : AGGAGCATGCAGCCTCGTGCTCCTCTGCCCCCTCATTCCCTCCGGTGTTGCATTACTC : 168258
26 : hrValGlySer{Le} >>>> Target Intron 1 >>>> {u}LeuAlaThrTy : 33
!!||||||..!{! } 32541 bp {!}|||||||||
roValGlyGlu{Cy}++ ++{s}LeuAlaThrAr
168257 : CAGTAGGCGAA{TG}gt.........................ag{C}CTCGCTACCCG : 135693
34 : rGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValValPheGlnLysLeuSer : 52
! ! ||| ! !!!..!!||||||! !||| ! !!.!!::! |||! !!:!
gLeuGluTyrSerCysLeuGlyCysIleSerLeuGluProAlaTrpProLysCysAsn
135692 : TCTGGAATATTCCTGTTTGGGCTGCATCTCTTTGGAGCCGGCGTGGCCCAAATGCAAT : 135636
53 : AlaArgLeuArg >>>> Target Intron 2 >>>> AlaLeuArgGln{Ar} : 61
||| !|||!:! 71635 bp !.! !|||...{||}
AlaLeuLeuLys++ ++GlyThrArgSer{Ar}+
135635 : GCATTACTGAAGgt.........................agGGTACAAGATCC{CG}g : 63972
62 : >>>> Target Intron 3 >>>> {g}GlnLeuAspArgAlaAlaAlaAlaVal : 70
9881 bp {|} ||||||! ! !!:!!|||.!!:!!
+ ++{g}GlyLeuAspLeuProSerAlaThrLeu
63971 : t.........................ag{G}GGCCTCGATCTGCCCTCCGCCACTCTT : 54066
71 : GluProAspValValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuLysMetG : 90
||| !..! !::! !.!.! |||:!! !|||||| !!||| ! !!:.
LeuProProGlnThrTyrArgSerAspAlaAlaValGlnAlaAlaGlyLeuHisIleS
54065 : CTCCCCCCACAGACTTACCGGTCGGATGCTGCTGTCCAAGCTGCTGGGCTGCATATCA : 54006
91 : lnGluGluLeu{A} >>>> Target Intron 4 >>>> {sn}AlaGlnValGl : 98
.. ! ! !:!!{ } 155 bp { }|||!:::!!:!
erTyrGlyIle{A}++ ++{la}AlaArgLeuLy
54005 : GCTATGGGATA{G}gt.........................ag{CA}GCTCGTCTAAA : 53827
99 : uLysHisLysGluLysLeuLysGlnLeuGluGluGluLysArgArgGlnLysIle > : 117
!! !!!.:!!||| ! ! !||| !|||:!! ! |||..!!:!|||!:!
sMetGlnGluGluLeuAsnAlaGlnAlaGluLysTyrLysGluLysGlnArgGlu++
53826 : GATGCAAGAAGAATTGAATGCACAAGCAGAAAAATACAAAGAGAAACAAAGAGAGgt. : 53768
118 : >>> Target Intron 5 >>>> GluMetTrpAspSerMetGlnGluGlyLysSe : 127
7057 bp :!!:!:||| ! !:!:.!....||||||!:
++GlnValTrpLysValLeuAspSerGlyLysAs
53767 : ........................agCAAGTATGGAAGGTTTTAGACTCTGGGAAGAA : 46683
128 : rTyrLysGlyAsnAlaLysLys{Pr} >>>> Target Intron 6 >>>> {o} : 135
!||| !! !!:! !||| !!{ } 275 bp {!}
nTyrProGluSerIleLys***{Ly}++ ++{s}
46682 : TTATCCAGAAAGTATCAAGTAA{AA}gt.........................ag{A} : 46382
136 : GlnGluGluAspSerProGlyProSerThrSerSerValLeuLysArg{L} >>>> : 152
.!.:!!:!!!!:||||||..!|||!!!!.! !!||| !||||||! !{|}
AspLysLysGluSerProAsnProArgAsnProSerHisLeuLysIle{L}++
46381 : GACAAAAAGGAATCTCCAAATCCCAGAAACCCCAGCCACCTCAAAATT{A}gt..... : 46330
153 : Target Intron 7 >>>> {ys}SerAspArgLysProLeuArgGlyGlyGlyTy : 163
10736 bp {||}! ! ! !:!!||| !||||||||| ! !
++{ys}IleProAlaGluProGlyArgGlyGlyProGl
46329 : ....................ag{AA}ATACCTGCAGAGCCGGGCCGTGGCGGCCCACA : 35564
164 : r >>>> Target Intron 8 >>>> AsnProLeuSerGly{G} >>>> Tar : 169
29526 bp !||||||..!|||{!}
n++ ++AlaProLeuGlnGly{G}++
35563 : Ggt.........................agGCCCCTCTGCAAGGA{G}gt........ : 6017
170 : get Intron 9 >>>> {lu}GlyGlyGlyAlaCys : 174
3210 bp { !}!.!||||||||||||
+-{ly}AlaGlyGlyAlaCys
6016 : .................an{GG}GCTGGCGGGGCTTGC : 2793
vulgar: SPP00000100_2.0 5 174 . gi|397460072|gb|JH735429.1|:subseq(99000,200000) 168315 2792 - 102 M 23 69 S 0 2 5 0 2 I 0 32537 3 0 2 S 1 1 M 27 81 5 0 2 I 0 71631 3 0 2 M 4 12 S 0 2 5 0 2 I 0 9877 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 151 3 0 2 S 1 2 M 22 66 5 0 2 I 0 7053 3 0 2 M 18 54 S 0 2 5 0 2 I 0 271 3 0 2 S 1 1 M 16 48 S 0 1 5 0 2 I 0 10732 3 0 2 S 1 2 M 11 33 5 0 2 I 0 29522 3 0 2 M 5 15 S 0 1 5 0 2 I 0 3206 3 0 2 S 1 2 M 5 15
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local gene 2793 168315 102 - . gene_id 2 ; sequence SPP00000100_2.0 ; gene_orientation +
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 168245 168315 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 168245 168315 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 168243 168244 . - . intron_id 1 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 135704 168244 . - . intron_id 1
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 135704 135705 . - . intron_id 0 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 135622 135703 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 135622 135703 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 135620 135621 . - . intron_id 2 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 63987 135621 . - . intron_id 2
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 63987 63988 . - . intron_id 1 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 63973 63986 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 63973 63986 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 63971 63972 . - . intron_id 3 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 54092 63972 . - . intron_id 3
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 54092 54093 . - . intron_id 2 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 53994 54091 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 53994 54091 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 53992 53993 . - . intron_id 4 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 53839 53993 . - . intron_id 4
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 53839 53840 . - . intron_id 3 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 53771 53838 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 53771 53838 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 53769 53770 . - . intron_id 5 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 46714 53770 . - . intron_id 5
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 46714 46715 . - . intron_id 4 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 46658 46713 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 46658 46713 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 46656 46657 . - . intron_id 6 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 46383 46657 . - . intron_id 6
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 46383 46384 . - . intron_id 5 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 46333 46382 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 46333 46382 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 46331 46332 . - . intron_id 7 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 35597 46332 . - . intron_id 7
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 35597 35598 . - . intron_id 6 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 35562 35596 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 35562 35596 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 35560 35561 . - . intron_id 8 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 6036 35561 . - . intron_id 8
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 6036 6037 . - . intron_id 7 ; splice_site "AG"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 6020 6035 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 6020 6035 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice5 6018 6019 . - . intron_id 9 ; splice_site "GT"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local intron 2810 6019 . - . intron_id 9
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local splice3 2810 2811 . - . intron_id 8 ; splice_site "AN"
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local cds 2793 2809 . - .
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local exon 2793 2809 . - . insertions 0 ; deletions 0
gi|397460072|gb|JH735429.1|:subseq(99000,200000) exonerate:protein2genome:local similarity 2793 168315 102 - . alignment_id 2 ; Query SPP00000100_2.0 ; Align 168316 6 69 ; Align 135703 30 81 ; Align 63987 57 12 ; Align 54091 62 96 ; Align 53837 95 66 ; Align 46714 117 54 ; Align 46382 136 48 ; Align 35595 153 33 ; Align 6036 164 15 ; Align 2808 170 15
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis