Find start end points: [25,143930][186,149985] Score 71213
Recovering alignment: Alignment recovered72] Explicit read off 89%

genewise output
Score 205.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397460072|gb|JH735429.1|:subseq(99000,200000) is longer than
allowed name block (15). Truncating

SPP00000100_2.0   26 VGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAV     
                     VG+LL+ YGWY++++C+ +Y++ QK+S   RA R+ + D   AA      
                     VGALLSAYGWYLLLACVAIYLLVQKVSESARARRRSRPDPPGAAA     
gi|397460072|g-56072 gggcctgtgttcccgtggatccgcagtgagcgcacaacgccgggg     
                     tgcttccaggatttcgtctatttaatcagcgcgggggcaccgccc     
                     gcggggcccgcggcccccccgcggggcgccacgagcggcgaggca     


SPP00000100_2.0   71                           PDVVVKRQEALAAARLKMQEELN 
                                               PD VV+RQEALAAARLKMQEELN 
                               E:E[gag]        PDAVVRRQEALAAARLKMQEELN 
gi|397460072|g-55937 GGTGCGTG  Intron 1   TAGAGcggggaccggcgggccaacggta 
                      <1-----[55936:53878]-1>  cacttggaactcccgtataaata 
                                               ttggggggacgaattaggaaagt 


SPP00000100_2.0   95 AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
                     AQ EK+KEK ++                       LEEEKRRQKI MW+ 
                     AQAEKYKEKQRE                       LEEEKRRQKIAMWE 
gi|397460072|g-53806 gcggatagacagGTAACTG  Intron 2   CAGcgggaaacaagatg 
                     cacaaaaaaaga<0-----[53770:52429]-0>taaaaggaatctga 
                     aaaaacagaaag                       taagaagggaaggg 


SPP00000100_2.0  121 SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
                     SMQEGKSYKGN K  Q                       +E +  PSTS 
                     SMQEGKSYKGNLKLNQ                       QETASSPSTS 
gi|397460072|g-52386 aacggaatagacacacGTAAGGA  Intron 3   CAGcgagtactat 
                     gtaagagaagatataa<0-----[52338:52182]-0>aacccgcccc 
                     cggaaactaatgggcg                       aaaacctcca 


SPP00000100_2.0  147 S-VLKRKSDRKPLRGG                          YNPLSGE 
                     S V K K D+KPLRGG                          YNPLSGE 
                     SAVPKPKPDKKPLRGG          G:G[ggt]        YNPLSGE 
gi|397460072|g-52151 tggcacacgaacccggGGTAAGTA  Intron 4   CAGGTtacttgg 
                     cctcacacaaactggg <1-----[52102:50092]-1>  aactcga 
                     aacagagacggtgtat                          tttgtaa 


SPP00000100_2.0  170 GGGACSWRPGRRGPSSGG                                
                     GGGACSWRPGRRGPS+GG                                
                     GGGACSWRPGRRGPSAGG                                
gi|397460072|g-50068 ggggtttacgcagctggg                                
                     gggcgcggcggggcccgg                                
                     ttacctgagacacatata                                


//
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|397460072|gb|JH735429.1|:subseq(99000,200000).pep
VGALLSAYGWYLLLACVAIYLLVQKVSESARARRRSRPDPPGAAAEPDAVVRRQEALAAA
RLKMQEELNAQAEKYKEKQRELEEEKRRQKIAMWESMQEGKSYKGNLKLNQQETASSPST
SSAVPKPKPDKKPLRGGGYNPLSGEGGGACSWRPGRRGPSAGG
//
>gi|397460072|gb|JH735429.1|:subseq(99000,200000).[56072:50013].sp
GTGGGCGCGCTGCTGTCGGCCTACGGCTGGTACCTGCTGCTCGCCTGCGTCGCCATCTAC
CTGCTCGTGCAGAAGGTGTCCGAGAGCGCCCGAGCCCGGAGACGGAGCAGGCCGGACCCG
CCAGGGGCGGCCGCAGAGCCTGATGCGGTGGTGAGGCGGCAGGAAGCCCTGGCAGCAGCT
CGTCTAAAGATGCAAGAAGAATTGAATGCACAAGCAGAAAAATACAAAGAGAAACAAAGA
GAGCTTGAAGAAGAGAAAAGAAGGCAGAAGATAGCAATGTGGGAGAGCATGCAGGAAGGA
AAAAGCTATAAAGGAAATCTGAAGCTGAACCAGCAAGAAACAGCATCCAGCCCTTCCACC
TCATCAGCAGTCCCAAAGCCAAAGCCAGACAAGAAGCCTCTGCGTGGAGGTGGTTATAAT
CCTTTGTCTGGAGAAGGTGGTGGAGCCTGCTCTTGGAGACCGGGACGCAGAGGCCCATCT
GCAGGTGGA
//
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	match	56072	50015	205.48	-	.	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	cds	56072	55937	0.00	-	0	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	intron	55936	53878	0.00	-	.	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	cds	53877	53771	0.00	-	2	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	intron	53770	52429	0.00	-	.	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	cds	52428	52339	0.00	-	0	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	intron	52338	52182	0.00	-	.	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	cds	52181	52103	0.00	-	0	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	intron	52102	50092	0.00	-	.	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
gi|397460072|gb|JH735429.1|:subseq(99000,200000)	GeneWise	cds	50091	50015	0.00	-	2	gi|397460072|gb|JH735429.1|:subseq(99000,200000)-genewise-prediction-1
//