Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/SELP.fa -t gi|397460395|gb|JH735106.1|subseq.fa -E]
Hostname: [ws101060]
** (process:3156): WARNING **: Exhaustively generating suboptimal alignments will be VERY SLOW
C4 Alignment:
------------
Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human (Homo sapiens)
Target: gi|397460395|gb|JH735106.1|:subseq(170000,110000) Alligator mississippiensis unplaced genomic scaffold scaffold-6630, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 812
Query range: 0 -> 353
Target range: 60578 -> 54463
1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrGlu : 20
|||||| !.!!|||||||||||||||!.!|||||||||||||||..!||||||||||||
MetTrpAlaGlyLeuGlyLeuAlaLeuValLeuCysLeuLeuProGluGlyGlyThrGlu
60578 : ATGTGGGCAGGGCTGGGACTGGCCCTGGTTCTCTGTCTCCTCCCAGAAGGAGGGACAGAG : 60521
21 : SerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGlnAsp : 40
||||||! !..!|||:!!! !||||||:!!||||||! !|||! !||| !! !||||||
SerGlnGlySerSerAlaHisCysLysGluProProGluTrpTyrIleAlaGlyGlnAsp
60520 : AGCCAGGGTTCAAGTGCCCATTGTAAAGAACCCCCAGAATGGTATATTGCGGGCCAAGAT : 60461
41 : ProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSerUnkTyr : 60
|||||||||||||||!..|||||||||||||||||||||||||||||||||||| :!!
ProMetLeuAsnSerArgGlySerValThrValValAlaLeuLeuGlnAlaSer***His
60460 : CCCATGCTGAATTCTAGAGGTTCAGTGACTGTGGTAGCTCTCCTCCAAGCAAGCTGACAC : 60401
61 : LeuCysIleLeuGlnAlaSer{Ly} >>>> Target Intron 1 >>>> {s}Leu : 69
||||||:!:||||||||||||{!.} 1892 bp {.}|||
LeuCysLeuLeuGlnAlaSer{Se}++ ++{r}Leu
60400 : TTGTGCTTGCTGCAAGCTTCC{AG}gt.........................ag{C}CTG : 58482
70 : GluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTyrIleValVal : 89
|||||||||||||||||||||:!!!!.!!:||| ! !||||||||||||!!:||||||
GluAspLeuArgValLysLeuGluAsnAspGlyLeuValAsnIleSerTyrMetValVal
58481 : GAAGACTTGCGTGTGAAGTTAGAGAACGATGGGCTTGTCAACATTTCATATATGGTGGTC : 58422
90 : AsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsnLysValSerGlu : 109
|||||||||! !|||!!!|||!:! !||| ! ! |||!:!!!.:!!|||||||||
AsnHisGlnGluIleThrSerGlnGluLysIleHisLeuLeuArgLysGluValSerGlu
58421 : AATCACCAAGAAATCACTTCCCAAGAGAAAATCCACTTGCTGAGAAAGGAGGTCTCCGAG : 58362
110 : HisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpThrLeuLeuAsnGly : 129
|||||| !||||||||||||!!:||||||||| !!|||||||||||| !|||||||||
HisIleValValTyrGlnGlnAspGluAsnGlnProAspValTrpThrThrLeuAsnGly
58361 : CATATTGTTGTTTACCAACAGGATGAGAATCAACCCGATGTCTGGACTACCTTAAATGGA : 58302
130 : SerLysAspAspPheLeuIleTyrAsp{Ar} >>>> Target Intron 2 >>>> : 139
!:!||||||||||||||||||||||||{||} 592 bp
AsnLysAspAspPheLeuIleTyrAsp{Ar}++ ++
58301 : AACAAAGATGATTTTCTTATATATGAC{AG}gt.........................ag : 57680
140 : {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSerPheLeuThrPheProTyr : 158
{|}||||||||||||||||||||||||! !||||||!:!!!!!:!|||!:!|||||||||
{g}CysGlyArgLeuValTyrHisLeuGluLeuProTyrThrTyrLeuSerPheProTyr
57679 : {G}TGTGGCCGTCTAGTGTATCACCTTGAGCTGCCTTATACTTACCTGAGTTTCCCATAT : 57623
159 : ValGluGluAlaIleLysIleAlaTyrCysGluLysLysCysGlyAsnCysSerLeuThr : 178
|||||||||:!!|||||||||||||||||||||:!!!!.|||||||||||||||! !! !
ValGluGluSerIleLysIleAlaTyrCysGluGlnAsnCysGlyAsnCysSerTyrMet
57622 : GTGGAAGAATCAATTAAGATCGCCTACTGTGAACAGAACTGTGGAAATTGCTCTTATATG : 57563
179 : >>>> Target Intron 3 >>>> ThrLeuLysAspGluAspPheCysLysArgV : 189
2527 bp ! !! ! ! ! !|||!!: !!|||!!.!.!:
++ ++MetProAspValGluGluValCysAsnAsnI
57562 : gt.........................agATGCCAGATGTTGAAGAGGTTTGCAATAACA : 55003
190 : alSerLeuAlaThrValAspLysThrValGluThrProSerProHisTyrHisHisGluH : 209
!!||| ! !!..!! !!!:||| !!||||||! ! !! !! !!!.:!! !|||.!.
leSerLysProValAspGluLysProValGluIleThrProGluGlnHisSerHisHisS
55002 : TAAGTAAGCCAGTTGATGAAAAGCCAGTGGAGATCACACCTGAACAACACAGCCATCACT : 54943
210 : isHisHisAsnHisGlyHisGlnHisLeuGlySerSerGluLeuSerGluAsnGlnGlnP : 229
!|||||| :!! !|||::!|||! !||| !.!!.!. !.!....:!!:!!
erHisHisProAsnGlnHisArgHisHisGlyHisGlyHis---HisHisArgGluGluA
54942 : CCCATCACCCAAACCAACACAGACACCATGGACACGGGCAC---CATCACCGGGAAGAGG : 54886
230 : roGlyAlaProAsnAlaProThrHisProAlaProProGlyLeuHisHisHisHisLysH : 249
! ! ! !!.!.! !! !!.!!!.! !|||! ! !! !! !|||||| !! ! !:
spHisLeuSerGluAspGlnAsnGlnGlnAlaArgAlaGlnArgHisHisSerProGlyA
54885 : ATCATCTTTCAGAAGATCAGAACCAACAGGCTCGTGCTCAACGACATCATTCCCCTGGGA : 54826
250 : isLysGlyGlnHisArgGlnGlyHisProGluAsnArgAspMetProAlaSerGluAsp : 269
!!!!. !!!::|||!.!::!! !! !...||||||.!. ! !|||.!!....!.
snAsnArgArgHisAsnArgValLeuGlyArgAsnArgGlnGlyGlnAlaGlySerGln+
54825 : ACAATCGACGTCATAACAGGGTTCTGGGACGTAATAGACAGGGTCAGGCAGGTAGCCAGg : 54766
270 : >>>> Target Intron 4 >>>> LeuGlnAspLeuGlnLysLysLeuCysArgLy : 279
51 bp !:!! ||| !|||||| ! !.!
- ++SerLysArgLeu***LysLys---GlyAsnAl
54765 : a.........................agAGTAAAAGGCTCTGAAAGAAA---GGAAATGC : 54688
280 : sArgCysIleAsnGlnLeuLeuCysLysLeuProThrAspSerGluLeuAlaProArgSe : 299
!!!|||! !||||||||| !!! !!.!!! !! !! ||||||! !.!! !!!!!||
aSerCysLysAsnGlnLeuThr***AsnPheLeuLysAlaSerGluSerThrSerSerSe
54687 : CAGTTGCAAAAATCAGTTAACCTGAAACTTTTTGAAAGCGTCAGAATCAACTTCTAGTAG : 54628
300 : rUnkCysCysHisCysArgHisLeuIlePheGluLysThrGlySerAlaIleThrUnkGl : 319
| |||!! |||!! |||||||||:!:||||||:!!..!|||!.!||| !||| !!
r***Cys***His***ArgHisLeuLeuPheGluGluValGlyLysAlaAlaThr***Hi
54627 : CTGATGCTGACACTGACGACACCTGTTGTTTGAAGAAGTAGGGAAGGCAGCCACCTGACA : 54568
320 : nCysLysGluAsnLeuProSerLeuCysSerUnkGlnGlyLeuArgAlaGluGluAsnIl : 339
.|||::!! !!..||||||..! !|||!!! ||||||! !! ! ! !||||||||
sCysArgGlyThrLeuProAspThrCysArg***GlnGlyGlnLeuLeuLeuGluAsnIl
54567 : CTGTCGAGGAACACTTCCAGATACCTGCAGGTGACAGGGCCAGCTGCTGTTAGAGAACAT : 54508
340 : eThrGluSerCysGlnUnkArgLeuProProAlaAlaUnkGln : 353
||||||||||!! ||| ||||||! !||||||||| |||
eThrGluSer***Gln***ArgLeuLeuProAlaAla***Gln
54507 : CACTGAATCTTGACAGTGACGTTTGCTCCCAGCTGCTTGACAG : 54464
vulgar: SPP00000082_2.0 0 353 . gi|397460395|gb|JH735106.1|:subseq(170000,110000) 60578 54463 - 812 M 67 201 S 0 2 5 0 2 I 0 1888 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 588 3 0 2 S 1 1 M 39 117 5 0 2 I 0 2523 3 0 2 M 44 132 G 1 0 M 45 135 5 0 2 I 0 47 3 0 2 M 7 21 G 1 0 M 77 231
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local gene 54464 60578 812 - . gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 60376 60578 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 60376 60578 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 60374 60375 . - . intron_id 1 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 58484 60375 . - . intron_id 1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 58484 58485 . - . intron_id 0 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 58271 58483 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 58271 58483 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 58269 58270 . - . intron_id 2 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 57679 58270 . - . intron_id 2
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 57679 57680 . - . intron_id 1 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 57561 57678 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 57561 57678 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 57559 57560 . - . intron_id 3 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 55034 57560 . - . intron_id 3
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 55034 55035 . - . intron_id 2 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 54767 55033 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 54767 55033 . - . insertions 0 ; deletions 1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 54765 54766 . - . intron_id 4 ; splice_site "GA"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 54716 54766 . - . intron_id 4
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 54716 54717 . - . intron_id 3 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 54464 54715 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 54464 54715 . - . insertions 0 ; deletions 1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local similarity 54464 60578 812 - . alignment_id 1 ; Query SPP00000082_2.0 ; Align 60579 1 201 ; Align 58483 69 210 ; Align 57678 140 117 ; Align 55034 179 132 ; Align 54902 224 135 ; Align 54716 269 21 ; Align 54695 277 231
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human (Homo sapiens)
Target: gi|397460395|gb|JH735106.1|:subseq(170000,110000) Alligator mississippiensis unplaced genomic scaffold scaffold-6630, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 113
Query range: 139 -> 348
Target range: 93087 -> 12575
140 : CysGlyArgLeu{V} >>>> Target Intron 1 >>>> {al}TyrHisLeuGly : 148
||||||!:!! !{!} 6252 bp { !}||| !:!! !
CysGlyGln***{A}++ ++{sp}TyrThrValLeu
93087 : TGTGGGCAATAG{G}gt.........................ag{AT}TATACTGTGCTT : 86811
149 : LeuProPheSerPheLeuThrPheProTyrValGlu >>>> Target Intron 2 > : 161
||||||!::|||! !! !|||||| ! ! !:!! 5157 bp
LeuProTrpSerCysProThrPheSerProTyrGln++
86810 : TTGCCATGGAGCTGCCCCACTTTCAGCCCTTATCAGgt...................... : 86770
162 : >>> Glu{A} >>>> Target Intron 3 >>>> {la}IleLysIleAlaTyrC : 168
|||{!} 20674 bp {.!}|||:!!:!!|||!:!|
++Glu{G}++ ++{ly}IleGlnLeuAlaPheC
86769 : ...agGAA{G}gt.........................ag{GT}ATTCAACTTGCATTTT : 60920
169 : ysGluLysLysCysGlyAsnCysSer >>>> Target Intron 4 >>>> LeuTh : 178
||.!.||||||||| !:!!!! .!! 5860 bp :!! !
ysHisLysLysCysGlnAsp***Gly++ ++MetPr
60919 : GTCACAAAAAATGTCAGGATTGAGGAgt.........................agATGCC : 55030
179 : rThrLeuLysAsp<-><->GluAspPheCysLysArgValSerLeuAlaThrValAspLy : 196
! !:!!:!!!!: .!.:!!.!. !!|||! !|||..! ! ! !!|||!!:!
oAspValGluGluValCysAsnAsnIleSerLysProValAspGluLysProValGluIl
55029 : AGATGTTGAAGAGGTTTGCAATAACATAAGTAAGCCAGTTGATGAAAAGCCAGTGGAGAT : 54970
197 : sThrValGluThrProSerProHisTyrHisHis<-><-><->GluHisHisHisAsnHi : 213
||| !||| !! !|||! !|||! !|||||| .!....||||||...||
eThrProGluGlnHisSerHisHisSerHisHisProAsnGlnHisArgHisHisGlyHi
54969 : CACACCTGAACAACACAGCCATCACTCCCATCACCCAAACCAACACAGACACCATGGACA : 54910
214 : sGlyHisGlnHisLeuGlySerSerGluLeuSerGluAsnGlnGlnProGlyAlaProAs : 233
|||||||!!.|||! !! !..!..!.!.|||||||||:!!|||.!.! ! !||| ..
sGlyHisHisHisArgGluGluAspHisLeuSerGluAspGlnAsnGlnGlnAla---Ar
54909 : CGGGCACCATCACCGGGAAGAGGATCATCTTTCAGAAGATCAGAACCAACAGGCT---CG : 54853
234 : nAlaProThrHisProAlaProProGlyLeuHisHisHisHisLysHisLysGlyGlnHi : 253
!|||! ! !|||! !:!!||| !..! !!..!.!|||:!!!:! ! !|||!:::!
gAlaGlnArgHisHisSerProGlyAsnAsnArgArgHisAsnArgValLeuGlyArgAs
54852 : TGCTCAACGACATCATTCCCCTGGGAACAATCGACGTCATAACAGGGTTCTGGGACGTAA : 54793
254 : sArgGlnGlyHisPro{G} >>>> Target Intron 5 >>>> {lu}AsnArgAs : 262
!|||||||||!!. !!{!} 3928 bp { !}::! !:!
nArgGlnGlyGlnAla{G}++ ++{ly}Ser***As
54792 : TAGACAGGGTCAGGCA{G}gt.........................ag{GG}TCTTAGAA : 50838
263 : pMetProAlaSerGluAspLeuGlnAspLeuGln{Ly} >>>> Target Intron 6 : 274
!:!: !! !!:! !|||.!.:!!:!!|||{ } 18570 bp
nLeuGlyGluAsnPheLeuLeuAsnAsnValGln{Gl}++
50837 : CTTAGGAGAGAATTTTCTTTTAAATAATGTACAA{GG}gt.................... : 50798
275 : >>>> {s}LysLeuCysArgLysArgCysIleAsnGlnLeuLeuCysLysLeuProTh : 291
{!}|||:!!! ..!|||! ! !! !.!. :!!||| !|||||| !!
++{y}LysIleLeuGluLysIleIleLysGluThrIleLeuAspLysLeuAlaGl
50797 : .....ag{G}AAGATCTTGGAGAAAATCATCAAAGAGACCATTCTTGACAAACTAGCTGA : 32181
292 : rAspSerGluLeuAlaProArgSerUnkCysCysHisCys{Ar} >>>> Target In : 305
!! !!:! ||| ! !!!!..! ! ! !:!!|||{ !} 1296
uGlyAsnLeuLeuArgAspSerGlnHisGlyPheTyrCys{Gl}++
32180 : AGGCAACCTCTTGAGGGATAGCCAGCATGGGTTTTATTGT{GG}gt.............. : 32135
306 : tron 7 >>>> {g}HisLeuIlePheGluLysThrGlySerAlaIleThr{Un} >> : 318
bp {!}|||:!!|||.!!:!! ! |||.!!..!||| !.!!{ }
++{y}HisMetIleLeuLysHisThrSerGlnAlaTyrAla{Me}++
32134 : ...........ag{C}CATATGATTCTCAAACATACAAGCCAGGCCTATGCG{AT}gt.. : 30800
319 : >> Target Intron 8 >>>> {k} >>>> Target Intron 9 >>>> Gln : 319
11251 bp { } 2513 bp !
++{t}++ ++Leu
30799 : .......................ag{G}gt.........................agTTG : 17037
320 : CysLysGluAsnLeuProSerLeuCysSerUnkGlnGlyLeuArgAlaGluGlu >>>> : 338
||| !|||||| !! !:!!:!!|||:!! :!! ! !||| !.....!
CysProGluAsnAlaHisAlaMetCysAlaLeuGluHisGlyArgLeuSerArg++
17036 : TGCCCAGAGAACGCCCATGCCATGTGTGCTCTGGAGCATGGCAGGTTATCTCGGgt.... : 16978
339 : Target Intron 10 >>>> AsnIleThrGluSer{Cy} >>>> Target Int : 343
3630 bp |||! !! !||||||{||} 742 b
++AsnSerArgGluSer{Cy}++
16977 : ......................agAACAGCAGAGAAAGC{TG}gt............... : 13331
344 : ron 11 >>>> {s}GlnUnkArgLeuPro : 348
p {|}|||...!:! !|||
++{s}GlnThrLysGlyPro
13330 : ...........ag{C}CAAACAAAAGGCCCA : 12576
vulgar: SPP00000082_2.0 139 348 . gi|397460395|gb|JH735106.1|:subseq(170000,110000) 93087 12575 - 113 M 4 12 S 0 1 5 0 2 I 0 6248 3 0 2 S 1 2 M 16 48 5 0 2 I 0 5153 3 0 2 M 1 3 S 0 1 5 0 2 I 0 20670 3 0 2 S 1 2 M 14 42 5 0 2 I 0 5856 3 0 2 M 6 18 G 0 6 M 25 75 G 0 9 M 24 72 G 1 0 M 26 78 S 0 1 5 0 2 I 0 3924 3 0 2 S 1 2 M 14 42 S 0 2 5 0 2 I 0 18566 3 0 2 S 1 1 M 30 90 S 0 2 5 0 2 I 0 1292 3 0 2 S 1 1 M 12 36 S 0 2 5 0 2 I 0 11247 3 0 2 S 1 1 5 0 2 I 0 2509 3 0 2 M 19 57 5 0 2 I 0 3626 3 0 2 M 5 15 S 0 2 5 0 2 I 0 738 3 0 2 S 1 1 M 5 15
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local gene 12576 93087 113 - . gene_id 2 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 93075 93087 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 93075 93087 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 93073 93074 . - . intron_id 1 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 86823 93074 . - . intron_id 1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 86823 86824 . - . intron_id 0 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 86773 86822 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 86773 86822 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 86771 86772 . - . intron_id 2 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 81616 86772 . - . intron_id 2
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 81616 81617 . - . intron_id 1 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 81612 81615 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 81612 81615 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 81610 81611 . - . intron_id 3 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 60938 81611 . - . intron_id 3
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 60938 60939 . - . intron_id 2 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 60894 60937 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 60894 60937 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 60892 60893 . - . intron_id 4 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 55034 60893 . - . intron_id 4
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 55034 55035 . - . intron_id 3 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 54775 55033 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 54775 55033 . - . insertions 15 ; deletions 1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 54773 54774 . - . intron_id 5 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 50847 54774 . - . intron_id 5
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 50847 50848 . - . intron_id 4 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 50801 50846 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 50801 50846 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 50799 50800 . - . intron_id 6 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 32231 50800 . - . intron_id 6
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 32231 32232 . - . intron_id 5 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 32138 32230 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 32138 32230 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 32136 32137 . - . intron_id 7 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 30842 32137 . - . intron_id 7
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 30842 30843 . - . intron_id 6 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 30803 30841 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 30803 30841 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 30801 30802 . - . intron_id 8 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 19552 30802 . - . intron_id 8
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 19552 19553 . - . intron_id 7 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 19551 19551 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 19551 19551 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 19549 19550 . - . intron_id 9 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 17038 19550 . - . intron_id 9
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 17038 17039 . - . intron_id 8 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 16981 17037 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 16981 17037 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 16979 16980 . - . intron_id 10 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 13351 16980 . - . intron_id 10
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 13351 13352 . - . intron_id 9 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 13334 13350 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 13334 13350 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice5 13332 13333 . - . intron_id 11 ; splice_site "GT"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local intron 12592 13333 . - . intron_id 11
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local splice3 12592 12593 . - . intron_id 10 ; splice_site "AG"
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local cds 12576 12591 . - .
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local exon 12576 12591 . - . insertions 0 ; deletions 0
gi|397460395|gb|JH735106.1|:subseq(170000,110000) exonerate:protein2genome:local similarity 12576 93087 113 - . alignment_id 2 ; Query SPP00000082_2.0 ; Align 93088 140 12 ; Align 86821 145 48 ; Align 81616 161 3 ; Align 60936 163 42 ; Align 55034 177 18 ; Align 55010 183 75 ; Align 54926 208 72 ; Align 54854 233 78 ; Align 50845 260 42 ; Align 32230 275 90 ; Align 30841 306 36 ; Align 17038 319 57 ; Align 13351 338 15 ; Align 12591 344 15
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis