TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human
(Homo sapiens)
         (381 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397460395|gb|JH735106.1| Alligator mississippiensis unplaced ...   102   2e-20
gi|397460716|gb|JH734785.1| Alligator mississippiensis unplaced ...    75   8e-18
gi|397459915|gb|JH735586.1| Alligator mississippiensis unplaced ...    34   9.7  

>gi|397460395|gb|JH735106.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-6630, whole genome shotgun sequence
          Length = 852651

 Score =  102 bits (255), Expect = 2e-20
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = -2

Query: 69     LEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLN 128
              LEDLRVKL+ +G  NISY+VVNHQ I+S+ K   L+ +VSEHI VYQQ+ENQ DVWT LN
Sbjct: 228482 LEDLRVKLENDGLVNISYMVVNHQEITSQEKIHLLRKEVSEHIVVYQQDENQPDVWTTLN 228303

Query: 129    GSKDDFLIYDR 139
              G+KDDFLIYDR
Sbjct: 228302 GNKDDFLIYDR 228270



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/70 (60%), Positives = 47/70 (67%)
 Frame = -3

Query: 1      MWRSXXXXXXXXXXPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXY 60
              MW            P GGTESQ  S+ CK+PP W I  QDPMLNS GSVTVVALLQAS +
Sbjct: 230578 MWAGLGLALVLCLLPEGGTESQGSSAHCKEPPEWYIAGQDPMLNSRGSVTVVALLQAS*H 230399

Query: 61     LCILQASKLE 70
              LC+LQAS+ E
Sbjct: 230398 LCLLQASR*E 230369



 Score = 74.3 bits (181), Expect = 8e-12
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = -3

Query: 139    RCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCS 176
              RCGRLVYHL LP+++L+FPYVEE+IKIAYCE+ CGNCS
Sbjct: 227680 RCGRLVYHLELPYTYLSFPYVEESIKIAYCEQNCGNCS 227567



 Score = 58.2 bits (139), Expect = 6e-07
 Identities = 36/73 (49%), Positives = 39/73 (53%)
 Frame = -1

Query: 281    CINQLLCKLPTDSELAPRSXCCHCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENIT 340
              C NQL       SE    S C H RHL+FE+ G A T  C+  LP  C  QG    ENIT
Sbjct: 224682 CKNQLT*NFLKASESTSSS*C*H*RHLLFEEVGKAAT*HCRGTLPDTCR*QGQLLLENIT 224503

Query: 341    ESCQXRLPPAAXQ 353
              ES Q RL PAA Q
Sbjct: 224502 ES*Q*RLLPAA*Q 224464


>gi|397460716|gb|JH734785.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-6128, whole genome shotgun sequence
          Length = 359352

 Score = 74.7 bits (182), Expect(2) = 8e-18
 Identities = 35/71 (49%), Positives = 47/71 (66%)
 Frame = -3

Query: 69    LEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLN 128
             L  LR KL ++G +N+SY++VN +   SR  Y  LK +  E +PVYQQ     DVW +L+
Sbjct: 96712 LGGLREKLSRQGMANVSYMIVNEKAPLSRAMYWELKRQAPEGVPVYQQGILDPDVWQILD 96533

Query: 129   GSKDDFLIYDR 139
             G KDDFLIYD+
Sbjct: 96532 GDKDDFLIYDK 96500



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -2

Query: 139   RCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNC 175
             RCGRLV+H+ LP+SFL FPYVE A+   Y +  CGNC
Sbjct: 94826 RCGRLVFHISLPYSFLHFPYVESAVHFTYTKDYCGNC 94716



 Score = 40.0 bits (92), Expect(2) = 8e-18
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -1

Query: 27    LCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXYLCILQASK 68
             +C+  P W I    PM  + G VTVVALL+AS   C+ QA++
Sbjct: 96957 ICQPAPLWKINGTVPMDEALGQVTVVALLKAS*QFCLKQANR 96832


>gi|397459915|gb|JH735586.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-7408, whole genome shotgun sequence
          Length = 721727

 Score = 34.3 bits (77), Expect = 9.7
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 98     LKYTHLKNKVSEHIPVYQQEENQTDVWTLLNG-SKDDFLIYDRCGRLVYHL 147
              LK+      +SEHI VY Q      V   LNG +K DF  Y + G L  HL
Sbjct: 462893 LKFAKSIKFISEHIDVYAQAHTHFGVILCLNGLTKIDFSFYKKTGTLSSHL 463045


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,013,393,195
Number of Sequences: 14644
Number of extensions: 16022485
Number of successful extensions: 72656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 68449
Number of HSP's gapped (non-prelim): 12662
length of query: 381
length of database: 724,747,747
effective HSP length: 131
effective length of query: 250
effective length of database: 722,829,383
effective search space: 180707345750
effective search space used: 180707345750
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)