Find start end points: [0,49424][255,55218] Score 99770
Recovering alignment: Alignment recovered Explicit read offfe 95%
genewise output
Score 287.88 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
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Information
Name gi|397460395|gb|JH735106.1|:subseq(170000,110000) is longer than
allowed name block (15). Truncating
SPP00000082_2.0 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSV
MW LGLAL LCLLP GGTESQ S+ CK+PP W I QDPMLNS GSV
MWAGLGLALVLCLLPEGGTESQGSSAHCKEPPEWYIAGQDPMLNSRGSV
gi|397460395|g-60578 atggcgcgcgctcccgggagacgtagctagccgttaggcgcacatagtg
tgcgtgtctttgttcaggcagagcgcagaaccagatcgaacttacggct
ggaggagcgtctccaaagagcgtatcttaacaagttgcatcggttatag
SPP00000082_2.0 50 TVVALLQASXYLCILQAS LEDLR
TVVALLQASX+LC+LQAS LEDLR
TVVALLQASXHLCLLQAS K:S[agc] LEDLR
gi|397460395|g-60431 agggcccgatctttccgtAGGTAAGAA Intron 1 TAGCcggtc
cttcttacggatgttacc <2-----[60375:58484]-2> taatg
tgatccaacacgcggatc gacgt
SPP00000082_2.0 74 VKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD
VKL+ +G NISY+VVNHQ I+S+ K L+ +VSEHI VYQQ+ENQ D
VKLENDGLVNISYMVVNHQEITSQEKIHLLRKEVSEHIVVYQQDENQPD
gi|397460395|g-58467 gatgaggcgaattaggaccgaatcgaactcaaggtgcaggtccggaccg
tataaagttatcatttaaaatccaaatattgaatcaatttaaaaaaaca
ggagctgtcctatggctcaactcagaccggaggccgttttcagtgtact
SPP00000082_2.0 123 VWTLLNGSKDDFLIYD CGRLVYH
VWT LNG+KDDFLIYD CGRLVYH
VWTTLNGNKDDFLIYD R:R[agg] CGRLVYH
gi|397460395|g-58320 gtaatagaaggtcatgAGGTCTGTA Intron 2 TAGGtgccgtc
tgcctagaaaatttaa <2-----[58270:57679]-2> gggttaa
cgtcatacattttatc tctagtc
SPP00000082_2.0 147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT
L LP+++L+FPYVEE+IKIAYCE+ CGNCS
LELPYTYLSFPYVEESIKIAYCEQNCGNCSYM
gi|397460395|g-57656 cgcctatcatctgggtaaagttgcatgattta
tatcacatgtcataactatcagaaaggagcat
tggtttcgtcatgaaatgccctagctatcttg
SPP00000082_2.0 179 TLKDEDFCKRVSLATVDKTVE-TPSP
E+ C +S +K VE TP
MPDVEEVCNNISKPVDEKPVEITPEQ
gi|397460395|g-57560 GTATTTT Intron 3 CAGacgggggtaaaaacgggacggaacgc
<0-----[57560:55034]-0>tcataatgaatgactaaactatccaa
gattagtctcatgattagaggcataa
SPP00000082_2.0 204 HYHHEH------HHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHH
H HH H HH HGH H LSE+Q A A H +P H
HSHHSHHPNQHRHHGHGHHHREEDHLSEDQNQQA-RAQRHHSPGNNRRH
gi|397460395|g-54955 cacctcccaccaccgcgccccgggcctggcaccg cgcccctcgaaccc
agaacaacaaagaagagaaagaaaatcaaaaaac gcagaaccgaagga
cctcctcacacactacgctcgagtttaatgcagt ttaattctgctatt
SPP00000082_2.0 247 HKHKGQHRQG
++ G++RQG
NRVLGRNRQG
gi|397460395|g-54811 aagcgcaacg
agttggagag
cgtgattagt
//
Making a S in phase 2 intron
Making a R in phase 2 intron
>gi|397460395|gb|JH735106.1|:subseq(170000,110000).pep
MWAGLGLALVLCLLPEGGTESQGSSAHCKEPPEWYIAGQDPMLNSRGSVTVVALLQASXH
LCLLQASSLEDLRVKLENDGLVNISYMVVNHQEITSQEKIHLLRKEVSEHIVVYQQDENQ
PDVWTTLNGNKDDFLIYDRCGRLVYHLELPYTYLSFPYVEESIKIAYCEQNCGNCSYMMP
DVEEVCNNISKPVDEKPVEITPEQHSHHSHHPNQHRHHGHGHHHREEDHLSEDQNQQARA
QRHHSPGNNRRHNRVLGRNRQG
//
>gi|397460395|gb|JH735106.1|:subseq(170000,110000).[60578:54780].sp
ATGTGGGCAGGGCTGGGACTGGCCCTGGTTCTCTGTCTCCTCCCAGAAGGAGGGACAGAG
AGCCAGGGTTCAAGTGCCCATTGTAAAGAACCCCCAGAATGGTATATTGCGGGCCAAGAT
CCCATGCTGAATTCTAGAGGTTCAGTGACTGTGGTAGCTCTCCTCCAAGCAAGCTGACAC
TTGTGCTTGCTGCAAGCTTCCAGCCTGGAAGACTTGCGTGTGAAGTTAGAGAACGATGGG
CTTGTCAACATTTCATATATGGTGGTCAATCACCAAGAAATCACTTCCCAAGAGAAAATC
CACTTGCTGAGAAAGGAGGTCTCCGAGCATATTGTTGTTTACCAACAGGATGAGAATCAA
CCCGATGTCTGGACTACCTTAAATGGAAACAAAGATGATTTTCTTATATATGACAGGTGT
GGCCGTCTAGTGTATCACCTTGAGCTGCCTTATACTTACCTGAGTTTCCCATATGTGGAA
GAATCAATTAAGATCGCCTACTGTGAACAGAACTGTGGAAATTGCTCTTATATGATGCCA
GATGTTGAAGAGGTTTGCAATAACATAAGTAAGCCAGTTGATGAAAAGCCAGTGGAGATC
ACACCTGAACAACACAGCCATCACTCCCATCACCCAAACCAACACAGACACCATGGACAC
GGGCACCATCACCGGGAAGAGGATCATCTTTCAGAAGATCAGAACCAACAGGCTCGTGCT
CAACGACATCATTCCCCTGGGAACAATCGACGTCATAACAGGGTTCTGGGACGTAATAGA
CAGGGT
//
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise match 60578 54782 292.87 - . gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise cds 60578 60376 0.00 - 0 gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise intron 60375 58484 0.00 - . gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise cds 58483 58271 0.00 - 1 gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise intron 58270 57679 0.00 - . gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise cds 57678 57561 0.00 - 1 gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise intron 57560 55034 0.00 - . gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
gi|397460395|gb|JH735106.1|:subseq(170000,110000) GeneWise cds 55033 54782 0.00 - 0 gi|397460395|gb|JH735106.1|:subseq(170000,110000)-genewise-prediction-1
//