Find start end points: [29,88493][65,88589] Score 8313
Recovering alignment: Alignment recovered] Explicit read off 69%
genewise output
Score 23.99 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397461378|gb|JH734123.1|:subseq(1630000,100000) is longer
than allowed name block (15). Truncating
SPP00000081_2.0 30 RSTLSGAAMEPAPRWLAGLRFDNRALRALPVEAPPPG
RS + AAM+ L G +RA +P E PPPG
RSVAAAAAMQS----LRGREVGSRAAEKVPFEVPPPG
gi|397461378|gb88492 atggggggaca ccgagggtagggagctggcccg
gctccccctag tgggatgcgccaatctatcccg
gagtttaagat tggaagccataaggctgtttta
//
>gi|397461378|gb|JH734123.1|:subseq(1630000,100000).pep
RSVAAAAAMQSLRGREVGSRAAEKVPFEVPPPG
//
>gi|397461378|gb|JH734123.1|:subseq(1630000,100000).[88492:88590].sp
AGGTCAGTGGCTGCTGCTGCAGCAATGCAAAGTCTTCGGGGGAGAGAAGTGGGCTCCAGA
GCTGCAGAAAAGGTGCCCTTTGAGGTTCCTCCTCCTGGA
//
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise match 88492 88590 26.98 + . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-1
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 88492 88590 0.00 + 0 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-1
//
Find start end points: [27,29093][665,49250] Score 307538
Recovering alignment: Alignment recovered] Explicit read offe 84%
genewise output
Score 887.37 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397461378|gb|JH734123.1|:subseq(1630000,100000) is longer
than allowed name block (15). Truncating
SPP00000081_2.0 28 APRSTLS-GAAMEPAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPR
AP S+ S G E WL LRFDN ALR+LP++ P P APR
APGSSSSEGRDAEAGAGWLGALRFDNLALRSLPLD-PCDDP-----APR
gi|397461378|g-70909 gcgaaaaggcgggggggtcggcctgacgcctcccg ctggc gcc
ccgggggaggacacgcggtgctgtaatctgctcta cgaac ccg
gacccccgggcgggcgcgccggccccggggggggc gtccg ggg
SPP00000081_2.0 76 PVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAPPAREAEAEAALFF
PVPGACF+RV ALLGL P EAE EAAL F
PVPGACFSRV!-----------------ALLGLRPPAGSEAENEAALCF
gi|397461378|g-70780 cgcggtttcg2 gccgccccggtgggagggctt
ctcgcgtcgt cttgtgcccgcacaaacctgt
cgcccccgcg ggggggggggcgcgcgcggcc
SPP00000081_2.0 125 SGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWEL
SGN L PGAEPAAHCYCGHQFG FAGQLGDGAAMYLGEV G RWE+
SGNRLPPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPAGRRWEV
gi|397461378|g-70685 agaccccgggcggctttgcctgatggccgggggatcgggcgcggcctgg
ggagtccgcacccagaggaatggtcgatgagcctatgattgccggggat
ccccggcccgccgccccccgccccgcggcccccgcgcgggcgcggcggg
SPP00000081_2.0 174 QLKGAGPTPFS QADGRKVLRSSI
QLKGAG TPFS QADGRKVLRSSI
QLKGAGLTPFS R:R[cgg] QADGRKVLRSSI
gi|397461378|g-70538 ccagggcacttCGGTAAGGA Intron 1 CAGGcgggcagcctaa
atagcgtcctc <2-----[70503:65800]-2> acaggattgcgt
gcgccccgccc attttgcggata
SPP00000081_2.0 198 REFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLR
REFLCSEAMFHLG+PTTRAG CVTS+S V+RDVFYDGNPK+E+CTVVLR
REFLCSEAMFHLGIPTTRAGTCVTSDSKVIRDVFYDGNPKHERCTVVLR
gi|397461378|g-65762 agtctaggatccgacaaaggatgatgtagacggttggacacgataggca
gattggacttatgtcccgcgcgtccacattgattaagacaaaggctttg
aacgctgtgtctaacaagtaataatcgattgtacttataataacatcga
SPP00000081_2.0 247 VASTFI FGSFEIFKSADEHTGRA
+ASTFI FGSFEIFK DEHTGR
IASTFI R:R[agg] FGSFEIFKPMDEHTGRK
gi|397461378|g-65615 agtataAGGTAGAGA Intron 2 CAGGtgttgatacaggcagca
tccctt <2-----[65595:64652]-2> tgctattactaaacgga
atctta taatgttatgtataagg
SPP00000081_2.0 271 GPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE
GPSV RNDIR Q+L+YVIS+FYPEIQ A+ +++QRNAAFFRE
GPSVNRNDIRTQMLNYVISTFYPEIQQAYPDNTIQRNAAFFRE
gi|397461378|g-64599 gcagacagacacacatgaaattcgaccgtcgaaacaaggttag
gcgtagaatgcattaattgctacataacacaactagaccttga
tctccatttaaggtccgcttctaacggtttccttggtttccag
SPP00000081_2.0 314 VTRRTARMVAEWQCVGFCHGVLNTDN
+T+RTAR+VAEWQCVGFCHGVLNTDN
ITKRTARLVAEWQCVGFCHGVLNTDN
gi|397461378|g-64470 GTAGGAA Intron 3 CAGaaacagatgggtctggttcggcaaga
<0-----[64470:58226]-0>tcagccgttcagagtgtgagttacaa
aaggaaggttaggttatcttggcatt
SPP00000081_2.0 340 MSILGLTIDYGPFGFLD YDPDHV
MSI+GLTIDYGPFGF+D YDP+H+
MSIVGLTIDYGPFGFMD R:R[aga] YDPEHI
gi|397461378|g-58147 aaaggcaagtgctgtagAGGTCAGTA Intron 4 TAGAtgcgca
tgttgtctaagctgtta <2-----[58094:57338]-2> aacaat
gccaatttctcttgtgc tctact
SPP00000081_2.0 364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA
CN SDNTGRYAY+KQPE+C+WNL KLAEAL PELPLE+ E IL EE++
CNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEEYNV
gi|397461378|g-57318 tagtgaagctgtaaccgatatacgacgggtgcgtctgaagcacgggtag
gagcaacggacaaaacatgagatgatcacttcatctatgatttaaaaat
ctttttaaccttcggaatcagtaggttatactagcggccactgaggcta
SPP00000081_2.0 413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT
EF++HYLQKMR+KLGL+Q+ELEED LVS+LLETMHLT
EFEKHYLQKMRKKLGLIQLELEEDNKLVSELLETMHLT
gi|397461378|g-57171 gtgacttcaaaaacgcaccgtgggaatgtgccgaacca
ataaaataatgaatgttatataaaaattcattactatc
atggttggggaggaactggaaaattagatacaatgtca
SPP00000081_2.0 451 ADFTNTFYLLSSFPVELESPGLA
ADFTN F LLSSF V+L+
G:G[ggt] ADFTNIFRLLSSFSVDLDFLKFE
gi|397461378|g-57057 GGTTAGTG Intron 5 TAGGTggtaaatctcatttggtgttatg
<1-----[57056:56830]-1> catcattgttgctctatattata
accattcgggtgcaatgttaatg
SPP00000081_2.0 475 EFLARLMEQCASLEELRLAFRPQMDP
EFL ++ QCAS+EEL++AF+PQMDP
EFLEKIANQCASMEELKVAFKPQMDP R:R[aga]
gi|397461378|g-56758 gtcgaagactgtaggtaggtaccagcAGGTACAAA Intron 6
attaatcaagcctaatatctacatac <2-----[56678:54402]
ataaatctgttcgaagactcgcggta
SPP00000081_2.0 501 QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE
QLSMMLMLAQSNPQLFAL+GT+A I ELER+EQ S+L+QL+AA+
QLSMMLMLAQSNPQLFALIGTKANINEELERIEQYSKLQQLTAAD
gi|397461378|g-54404 TAGAcctaacatgctaccctgtagaagaaaggtgcagcttatcctaggg
-2> atctttttcacacattcttgcacataaatagtaaacataatccca
atcgggggtatttagttataaattataaaacaaattagggaaatc
SPP00000081_2.0 547 LQSRNQGHWADWLQAY ARLDKDL
L SRN HW +WL+ Y ARL+K++
LLSRNNRHWTEWLEKY R:R[aga] ARLEKEI
gi|397461378|g-54265 ccaaaaactagttgatAGGTGAGAT Intron 7 CAGAgctgaga
ttggaagagcagtaaa <2-----[54215:51649]-2> cgtaaat
accatcatgaagggac ccaaaaa
SPP00000081_2.0 571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEV
E W AE V+VM++NNPKY+LRNYIAQNAIEAAE GDF+EV
ENINAVDTWNAERVKVMNSNNPKYILRNYIAQNAIEAAENGDFTEV
gi|397461378|g-51626 gaaagggataggcgagaataacatataatagcagaggggaggtagg
aatactacgacagtattacaacaattgaatcaactaccaagatcat
acttttttgttatgatgtactaattgaccctatcaaatattccaga
SPP00000081_2.0 617 RVLKLLETPYH-----CEAGAAT
+VLKLLE P+ E
R:R[cga] KVLKLLEDPFQETESFNEVQEEP
gi|397461378|g-51488 CGGTATTGC Intron 8 AAGAagtactggctcgagataggcggc
<2-----[51486:50928]-2> attattaactaacagtaataaac
gggggggtacagaatctgagaga
SPP00000081_2.0 636 DAEATEADGADGRQ--RS---YSSKPPLWAAELCVT
+ E A A + RS Y SKPP+WA+ELCVT
EEEEIVAAAAACAEVTRSKPPYCSKPPIWASELCVT
gi|397461378|g-50857 ggggaggggggtgggaaaaccttaaccatgtgctga
aaaattcccccgcatcggaccaggacctgccatgtc
agaaattatttttagcacatatctatccgtaactcg
//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|397461378|gb|JH734123.1|:subseq(1630000,100000).pep
APGSSSSEGRDAEAGAGWLGALRFDNLALRSLPLDPCDDPAPRPVPGACFSRVXALLGLR
PPAGSEAENEAALCFSGNRLPPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPAGR
RWEVQLKGAGLTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSKVIRD
VFYDGNPKHERCTVVLRIASTFIRFGSFEIFKPMDEHTGRKGPSVNRNDIRTQMLNYVIS
TFYPEIQQAYPDNTIQRNAAFFREITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDY
GPFGFMDRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEE
YNVEFEKHYLQKMRKKLGLIQLELEEDNKLVSELLETMHLTGADFTNIFRLLSSFSVDLD
FLKFEEFLEKIANQCASMEELKVAFKPQMDPRQLSMMLMLAQSNPQLFALIGTKANINEE
LERIEQYSKLQQLTAADLLSRNNRHWTEWLEKYRARLEKEIENINAVDTWNAERVKVMNS
NNPKYILRNYIAQNAIEAAENGDFTEVRKVLKLLEDPFQETESFNEVQEEPEEEEIVAAA
AACAEVTRSKPPYCSKPPIWASELCVT
//
>gi|397461378|gb|JH734123.1|:subseq(1630000,100000).[70909:70749].sp
GCGCCAGGCAGCAGCAGCAGCGAGGGGCGGGACGCGGAGGCGGGCGCGGGCTGGCTCGGC
GCGCTGCGCTTCGACAACCTGGCGCTGCGGTCGCTGCCGCTGGACCCGTGTGACGACCCG
GCGCCGCGGCCCGTGCCCGGCGCCTGCTTCTCGCGCGTG
>gi|397461378|gb|JH734123.1|:subseq(1630000,100000).[70748:50748].sp
GCGCTGCTGGGGCTGCGGCCGCCGGCGGGGTCCGAGGCCGAGAACGAGGCCGCGCTGTGC
TTCAGCGGCAACCGCCTGCCGCCCGGCGCCGAGCCCGCCGCGCACTGCTACTGCGGCCAC
CAGTTCGGCAGCTTCGCGGGCCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTG
CTGGGCCCGGCCGGGCGGCGCTGGGAGGTGCAGCTCAAGGGCGCCGGCCTCACGCCCTTC
TCCCGGCAAGCTGATGGTCGTAAGGTCCTGCGGTCAAGTATAAGAGAATTCCTGTGCAGT
GAGGCTATGTTTCACCTTGGAATACCCACAACAAGGGCTGGAACATGTGTAACATCTGAC
TCGAAAGTTATTCGGGATGTATTCTATGATGGAAATCCAAAACATGAAAGATGCACAGTT
GTCCTGAGAATAGCTTCCACTTTTATAAGGTTTGGATCATTTGAGATTTTTAAACCTATG
GATGAACATACAGGACGGAAGGGTCCCAGTGTCAACCGAAATGATATTCGAACACAGATG
CTTAACTACGTGATCAGTACTTTCTATCCAGAAATCCAGCAGGCTTATCCTGACAACACT
ATTCAGAGGAATGCTGCTTTCTTCAGAGAGATAACAAAGCGGACAGCAAGGTTGGTTGCT
GAATGGCAGTGTGTTGGATTTTGCCATGGTGTGCTGAACACAGATAATATGAGCATCGTA
GGACTTACTATTGACTATGGCCCTTTTGGGTTTATGGACAGATATGACCCTGAACACATT
TGCAATGGTTCTGATAATACAGGACGCTACGCTTATAACAAGCAGCCAGAAATTTGCAAA
TGGAATCTAGGGAAGCTTGCTGAAGCTTTAGTCCCTGAATTGCCCTTGGAGATCAGCGAA
CTCATTCTGGAAGAGGAGTACAATGTAGAATTTGAGAAGCATTATTTGCAGAAGATGAGA
AAGAAGCTAGGACTCATTCAGCTGGAATTAGAAGAAGATAATAAATTGGTATCTGAACTC
CTAGAAACTATGCATCTCACAGGTGCAGACTTCACAAATATTTTCCGGTTGCTGAGTTCG
TTCTCAGTAGATTTGGATTTTTTAAAATTTGAGGAATTTCTAGAAAAAATTGCCAATCAG
TGTGCTTCCATGGAAGAATTGAAAGTCGCTTTCAAGCCCCAGATGGATCCAAGACAACTT
TCCATGATGCTGATGTTGGCTCAATCTAATCCTCAACTGTTTGCTTTAATTGGAACAAAA
GCTAATATAAATGAAGAATTAGAACGCATAGAACAATATTCTAAATTGCAGCAGTTAACA
GCAGCTGACCTACTCAGCAGAAATAACAGACATTGGACAGAATGGTTGGAGAAATACAGA
GCCCGCTTAGAAAAAGAAATAGAAAACATTAATGCTGTTGATACTTGGAATGCTGAACGT
GTGAAAGTTATGAATTCAAACAATCCAAAATATATTTTGAGAAACTACATCGCTCAAAAT
GCCATAGAAGCAGCTGAAAATGGTGACTTCACAGAGGTACGAAAGGTGTTGAAGCTGTTG
GAGGATCCATTCCAAGAGACAGAAAGTTTCAATGAGGTACAGGAAGAGCCAGAAGAGGAA
GAAATAGTTGCTGCAGCTGCTGCTTGTGCTGAAGTGACCAGAAGCAAACCTCCATATTGC
AGTAAACCTCCCATCTGGGCTTCAGAACTCTGTGTCACG
//
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise match 70909 70751 40.52 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-1
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 70909 70751 0.00 - 0 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-1
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise match 70748 50750 878.80 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 70748 70504 0.00 - 0 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 70503 65800 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 65799 65596 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 65595 64652 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 64651 64471 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 64470 58226 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 58225 58095 0.00 - 0 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 58094 57338 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 57337 57057 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 57056 56830 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 56829 56679 0.00 - 2 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 56678 54402 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 54401 54216 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 54215 51649 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 51648 51487 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise intron 51486 50928 0.00 - . gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
gi|397461378|gb|JH734123.1|:subseq(1630000,100000) GeneWise cds 50927 50750 0.00 - 1 gi|397461378|gb|JH734123.1|:subseq(1630000,100000)-genewise-prediction-2
//