Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/SELN.fa -t gi|397456876|gb|JH738624.1|subseq.fa]
Hostname: [ws101062]
C4 Alignment:
------------
Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
Target: gi|397456876|gb|JH738624.1|:subseq(580000,120000) Alligator mississippiensis unplaced genomic scaffold scaffold-12508, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1874
Query range: 130 -> 589
Target range: 58542 -> 70900
131 : LeuSerLeuLeuArgSerThrProAlaAlaSerCysGluGluGluGluLeuProProAsp : 150
||| !! !||| !! !||||||!.!:!!..!! !|||||||||||| !!! !|||
LeuLeuCysLeuGlyValThrProValSerGluTyrGluGluGluGlu---ThrLeuAsp
58543 : TTGCTTTGTTTAGGTGTTACTCCTGTCTCTGAATACGAAGAGGAAGAG---ACGCTGGAT : 58597
151 : ProSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuProGluThrMet : 170
||||||! !|||! !|||:!!:!!! |||!:!||||||||||||||| !|||||||||
ProSerGlyGluMetLeuSerValAlaAlaLysPheGlnProLeuLeuMetGluThrMet
58598 : CCCAGTGGGGAGATGCTGTCTGTCGCTGCTAAATTCCAGCCCTTGCTCATGGAAACGATG : 58657
171 : ThrLysSerLysAspGlyPheLeuGly >>>> Target Intron 1 >>>> ValS : 181
||||||||||||||||||||||||||| 639 bp :!!|
ThrLysSerLysAspGlyPheLeuGly++ ++IleS
58658 : ACGAAGAGCAAAGACGGTTTTCTAGGAgt.........................agATTT : 59329
182 : erArgLeuAlaLeuSerGlyLeuArgAsnTrpThrAlaAlaAlaSerProSerAlaValP : 201
||!.!:!!|||||||||||||||||||||||||||||| !!|||:!!||| ! !|||.
erHisValAlaLeuSerGlyLeuArgAsnTrpThrAlaProAlaAlaProValAsnValM
59330 : CTCACGTTGCTCTGTCTGGGCTCCGGAACTGGACGGCGCCAGCGGCCCCCGTGAACGTGA : 59389
202 : heAlaThrArgHisPheGlnProPheLeuProProProGlyGln<->GluLeuGlyGluP : 220
!. !.!!|||!!.|||:!! !!|||||||||||| !..!:!! |||||||||!!:|
etPheAlaArgGlnPheLysAlaPheLeuProProLysAsnLysLeuGluLeuGlyAspP
59390 : TGTTTGCCAGGCAGTTCAAAGCTTTTCTCCCTCCAAAGAATAAGCTGGAACTCGGCGATC : 59449
221 : roTrpTrpIleIleProSerGluLeuSerMetPheThrGlyTyrLeuSerAsnAsnArgP : 240
||||||||||||||||||||||||||!:!!!:||||||||||||||||||||||||||||
roTrpTrpIleIleProSerGluLeuAsnIlePheThrGlyTyrLeuSerAsnAsnArgP
59450 : CCTGGTGGATTATCCCTAGCGAACTGAACATCTTCACCGGGTACCTTTCTAACAACCGGT : 59509
241 : heTyrProProProProLysGlyLysGlu >>>> Target Intron 2 >>>> Va : 250
||||||||||| !!||||||||||||||| 325 bp :!
heTyrProProAlaProLysGlyLysGlu++ ++Il
59510 : TTTACCCTCCAGCCCCCAAGGGCAAAGAGgt.........................agAT : 59864
251 : lIleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysThrArgPheAl : 270
!|||||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||
eIleIleHisLysLeuLeuSerMetPheHisProArgProPheValLysThrArgPheAl
59865 : CATCATCCACAAACTCTTGAGCATGTTCCATCCACGCCCGTTTGTAAAGACCCGCTTTGC : 59924
271 : aProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrThrValMetPh : 290
||||||||||||||||||||||:!! !|||! !|||!!:||||||||||||||| ||
aProGlnGlyAlaValAlaCysIleGlnAlaSerSerGluPheTyrTyrThrValAlaPh
59925 : GCCTCAAGGCGCTGTGGCCTGCATCCAGGCAAGCAGCGAGTTTTACTATACCGTCGCATT : 59984
291 : e{Ar} >>>> Target Intron 3 >>>> {g}IleHisAlaGluPheGlnLeuSe : 299
|{||} 1222 bp {|}|||||||||||||||||||||!:
e{Ar}++ ++{g}IleHisAlaGluPheGlnLeuAs
59985 : C{AG}gt.........................ag{G}ATTCATGCTGAGTTCCAGTTGAA : 61233
300 : rGluProProAspPheProPheTrpPheSerProAlaGlnPheThrGlyHisIleIleLe : 319
!|||||||||||||||||||||||||||||||||!.!|||||||||||||||:!!|||||
nGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHisValIleLe
61234 : TGAGCCTCCAGATTTCCCTTTCTGGTTCTCCCCTGGCCAGTTCACAGGACACGTCATCCT : 61293
320 : uSerLysAspAlaThrHisValArgAspPheArgLeuPheValProAsnHis{Ar} >> : 337
||||||||||:!!:!!|||||||||!!:|||!:!|||||||||||||||:!!{||}
uSerLysAspSerSerHisValArgGluPheLysLeuPheValProAsnAsn{Ar}++
61294 : CTCCAAAGATTCTTCCCATGTTCGGGAGTTCAAGCTCTTTGTCCCAAACAAC{AG}gt.. : 61351
338 : >> Target Intron 4 >>>> {g}SerLeuAsnValAspMetGluTrpLeuTyrGl : 348
2243 bp {|}||||||||||||||||||||||||||||||||
++{g}SerLeuAsnValAspMetGluTrpLeuTyrGl
61352 : .......................ag{G}TCCCTAAACGTTGACATGGAATGGCTATACGG : 63623
349 : yAlaSerGluSerSerAsnMetGluValAspIleGlyTyrIleProGln >>>> Targ : 365
||||||||||||||||||||||||||||||||||||||||:!!||||||
yAlaSerGluSerSerAsnMetGluValAspIleGlyTyrLeuProGln++
63624 : GGCGAGTGAAAGCAGCAACATGGAGGTGGACATTGGTTACCTCCCGCAGgt......... : 63676
366 : et Intron 5 >>>> MetGluLeuGluAlaThrGlyProSerValProSerValIle : 378
1041 bp ||||||||||||:!!! !|||||||||:!!||||||||||||
++MetGluLeuGluSerMetGlyProSerIleProSerValIle
63677 : ................agATGGAGTTAGAATCGATGGGGCCATCCATCCCTTCTGTGATT : 64754
379 : LeuAspGluAspGlySerMetIleAspSerHisLeuProSerGlyGluProLeuGlnPhe : 398
! !||||||:!!|||!:!:!!|||||||||... !|||!!!|||||||||:!!||||||
HisAspGluAsnGlyAsnValIleAspSerArgAspProThrGlyGluProIleGlnPhe
64755 : CACGATGAAAATGGAAATGTGATTGACAGCAGAGACCCCACGGGGGAGCCCATCCAGTTT : 64814
399 : ValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeu : 418
|||||||||||||||! |||||||||:!!:!!!!!|||||||||||||||!:!!:!|||
ValPheGluGluIleThrTrpGlnGlnLysIleThrTrpGluGluAlaAlaGlnLysLeu
64815 : GTGTTTGAAGAGATAACCTGGCAGCAGAAAATCACTTGGGAGGAAGCGGCTCAGAAGCTG : 64874
419 : GluValAlaMetTyrProPheLysLys >>>> Target Intron 6 >>>> ValS : 429
||||||||||||||||||||||||||| 1465 bp ||||
GluValAlaMetTyrProPheLysLys++ ++ValS
64875 : GAAGTTGCCATGTATCCGTTTAAGAAAgt.........................agGTTT : 66372
430 : erTyrLeuProPheThrGluAlaPheAspArgAlaLysAlaGluAsnLysLeuValHisS : 449
|||||||||||||||||:!!||||||!!:|||||||||||||||||||||||||||||||
erTyrLeuProPheThrGlnAlaPheGluArgAlaLysAlaGluAsnLysLeuValHisS
66373 : CGTACCTGCCCTTTACACAAGCCTTTGAGAGAGCAAAAGCTGAGAACAAGCTGGTGCACT : 66432
450 : erIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{G} >>>> Target In : 463
|||||||||||||||||||||||||||||||||||||| {|} 498
erIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{G}++
66433 : CCATCCTGCTGTGGGGCGCGCTGGACGACCAGTCCTGCTGA{G}gt.............. : 66477
464 : tron 7 >>>> {ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerProI : 478
bp {||}|||||||||||||||||||||||||||||||||||||||||||
++{ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerProI
66478 : ...........ag{GT}TCGGGGCGGACTCTCCGGGAGACCGTCCTGGAAAGTTCGCCCA : 67017
479 : leLeuThrLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValLysGluLeuGluG : 498
|||||.!!||||||||||||||||||:!!|||!:!||||||||||||||||||||||||!
leLeuAlaLeuLeuAsnGluSerPheValSerSerTrpSerLeuValLysGluLeuGluA
67018 : TCCTCGCTTTGCTGAATGAGAGCTTTGTCAGCAGCTGGTCACTAGTGAAGGAGCTAGAGG : 67077
499 : luLeuGln >>>> Target Intron 8 >>>> AsnAsnGlnGluAsnSerSerHi : 508
!:|||||| 1368 bp !.!!!.::!||||||..!! !:!
spLeuGln++ ++ThrLysArgGluAsnGluPheTy
67078 : ACTTGCAGgt.........................agACCAAGAGAGAGAATGAATTCTA : 68475
509 : sGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerPheProValGluMetMetIleCy : 528
!::!|||||||||! !||||||||||||||||||!:!|||||||||||||||||||||||
rArgLysLeuAlaGluLeuHisLeuGluLysTyrAsnPheProValGluMetMetIleCy
68476 : CAGGAAGCTAGCGGAGCTGCACCTAGAGAAATACAACTTCCCTGTGGAGATGATGATCTG : 68535
529 : sLeuProAsnGlyThrVal >>>> Target Intron 9 >>>> ValHisHisIle : 538
||||||||||||||||||| 2180 bp :!!|||||||||
sLeuProAsnGlyThrVal++ ++IleHisHisIle
68536 : CCTTCCCAATGGAACAGTGgt.........................agATTCACCACATC : 70745
539 : AsnAlaAsnTyrPheLeuAspIleThrSerValLysProGluGluIleGluSerAsnLeu : 558
||||||||||||||||||||||||||||||:!!||||||||||||:!!||||||!:!:!!
AsnAlaAsnTyrPheLeuAspIleThrSerMetLysProGluGluValGluSerSerVal
70746 : AATGCCAACTACTTCCTGGATATTACTTCTATGAAGCCCGAAGAAGTTGAGAGCAGCGTC : 70805
559 : PheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrMetGlnPheLeuLys : 578
||||||||||||!!!!.!|||||||||||||||||||||||||||:!:!:!|||||||||
PheSerPheSerThrAsnPheGluAspProSerThrAlaThrTyrLeuArgPheLeuLys
70806 : TTCAGTTTCTCAACCAATTTTGAAGATCCTTCTACTGCGACCTACCTCCGGTTCCTGAAG : 70865
579 : GluGlyLeuArgArgGlyLeuProLeuLeuGln : 589
|||||||||!.!|||!.! !|||!!!||||||
GluGlyLeuHisArgAlaLysProPheLeuGln
70866 : GAGGGACTGCACAGAGCAAAACCCTTCTTGCAG : 70900
vulgar: SPP00000079_2.0 130 589 . gi|397456876|gb|JH738624.1|:subseq(580000,120000) 58542 70900 + 1874 M 16 48 G 1 0 M 32 96 5 0 2 I 0 635 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 321 3 0 2 M 41 123 S 0 2 5 0 2 I 0 1218 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 2239 3 0 2 S 1 1 M 27 81 5 0 2 I 0 1037 3 0 2 M 63 189 5 0 2 I 0 1461 3 0 2 M 35 105 S 0 1 5 0 2 I 0 494 3 0 2 S 1 2 M 37 111 5 0 2 I 0 1364 3 0 2 M 34 102 5 0 2 I 0 2176 3 0 2 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local gene 58543 70900 1874 + . gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 58543 58686 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 58543 58686 . + . insertions 0 ; deletions 1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 58687 58688 . + . intron_id 1 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 58687 59325 . + . intron_id 1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 59324 59325 . + . intron_id 0 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 59326 59538 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 59326 59538 . + . insertions 3 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 59539 59540 . + . intron_id 2 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 59539 59863 . + . intron_id 2
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 59862 59863 . + . intron_id 1 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 59864 59988 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 59864 59988 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 59989 59990 . + . intron_id 3 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 59989 61210 . + . intron_id 3
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 61209 61210 . + . intron_id 2 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 61211 61348 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 61211 61348 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 61349 61350 . + . intron_id 4 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 61349 63591 . + . intron_id 4
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 63590 63591 . + . intron_id 3 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 63592 63673 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 63592 63673 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 63674 63675 . + . intron_id 5 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 63674 64714 . + . intron_id 5
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 64713 64714 . + . intron_id 4 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 64715 64903 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 64715 64903 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 64904 64905 . + . intron_id 6 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 64904 66368 . + . intron_id 6
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 66367 66368 . + . intron_id 5 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 66369 66474 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 66369 66474 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 66475 66476 . + . intron_id 7 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 66475 66972 . + . intron_id 7
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 66971 66972 . + . intron_id 6 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 66973 67085 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 66973 67085 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 67086 67087 . + . intron_id 8 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 67086 68453 . + . intron_id 8
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 68452 68453 . + . intron_id 7 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 68454 68555 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 68454 68555 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 68556 68557 . + . intron_id 9 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 68556 70735 . + . intron_id 9
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 70734 70735 . + . intron_id 8 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 70736 70900 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 70736 70900 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local similarity 58543 70900 1874 + . alignment_id 1 ; Query SPP00000079_2.0 ; Align 58543 131 48 ; Align 58591 148 96 ; Align 59326 180 108 ; Align 59437 216 102 ; Align 59864 250 123 ; Align 61212 292 135 ; Align 63593 338 81 ; Align 64715 365 189 ; Align 66369 428 105 ; Align 66975 464 111 ; Align 68454 501 102 ; Align 70736 535 165
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
Target: gi|397456876|gb|JH738624.1|:subseq(580000,120000) Alligator mississippiensis unplaced genomic scaffold scaffold-12508, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 220
Query range: 6 -> 136
Target range: 51630 -> 108381
7 : GlyGlnArgGlyProProSerProGly<-><->ProAlaAlaGlnProProAlaProP : 24
|||!::! !!.!|||||| !!|||||| ||| ! !!...|||||| !||||
GlyArgProAlaProProProProGlySerSerProPheProSerProProArgProP
51631 : GGTCGCCCCGCCCCGCCCCCGCCAGGCTCCTCCCCCTTCCCCTCCCCGCCCCGCCCCC : 51688
25 : roArgArgArgAlaArgSerLeuAlaLeuLeuGlyAlaLeuLeuAlaAlaAlaAlaAl : 43
|| !..!||||||! !:!!! !||| !|||..! !:!! !!.!|||!.!|||||
roAlaGluArgAlaMetAlaArgAlaGlyLeuSerArgValAlaValAlaValAlaAl
51689 : CCGCCGAGCGGGCCATGGCGCGGGCCGGGCTGTCGCGCGTGGCCGTGGCGGTGGCGGC : 51745
44 : aAlaAlaValArgValCysAlaArgHisAlaGluAlaGlnAlaAlaAlaArgGlnGlu : 62
| !||||||! !!.!..! !!:!:!! !..!! ! !! !!.!|||||||||:!!
aLeuAlaValLeuAlaAlaLeuLysTyrArgArgAspAlaGluValAlaArgGlnGln
51746 : GCTGGCCGTGCTGGCCGCCCTCAAGTACCGGCGGGACGCGGAGGTGGCAAGGCAGCAG : 51802
63 : >>>> Target Intron 1 >>>> LeuAlaLeuLysThrLeuGlyThrAspGl : 72
5795 bp !|||||||||.!!||||||!.!!!:||
++ ++ThrAlaLeuLysAlaLeuGlyAsnGluGl
51803 : gt.........................agACAGCTTTGAAGGCTCTGGGAAATGAGGG : 57627
73 : yLeuPheLeuPheSerSerLeuAspThrAspGlyAspMetTyrIleSerProGluGlu : 91
|!!!||||||||||||||||||||||||:!!..!|||:!!|||:!:||||||||||||
yPhePheLeuPheSerSerLeuAspThrAsnAsnAspLeuTyrLeuSerProGluGlu
57628 : CTTTTTTCTCTTCTCCTCCCTGGACACTAACAATGATCTGTACCTGAGCCCTGAGGAG : 57684
92 : PheLysProIleAlaGluLysLeuThrGly{Se} >>>> Target Intron 2 > : 102
||||||||||||||||||||||||||||||{||} 50557 bp
PheLysProIleAlaGluLysLeuThrGly{Se}++
57685 : TTCAAGCCAATAGCTGAGAAGTTAACGGGT{AG}gt...................... : 57721
103 : >>> {r}CysSerValThrGlnThrGlyValGln<->TrpCysSerHisSerSerLe : 118
{|}! |||:!!! ! |||..!..!||| ! ! |||! !:!!|||
++{r}***SerIleArgCysThrSerThrGlnAlaGlnGlySerProAlaSerTh
57722 : ...ag{T}TAGTCTATAAGGTGCACATCTACACAGGCACAGGGGTCCCCCGCATCTAC : 108325
119 : uGlnProGlnLeuProTrpLeuAsnUnkSerSerCysLeuSerLeuLeuArgSer : 136
!! !|||... ! ! ! !!.! !!!!:!||||||||||||||| !|||
rLeuProSerAlaCysLeuArgThrAsnThrAsnCysLeuSerLeuLeuSerSer
108326 : ACTGCCGTCTGCCTGCCTTCGGACTAACACTAACTGCCTTTCTCTCTTATCGAGT : 108381
vulgar: SPP00000079_2.0 6 136 . gi|397456876|gb|JH738624.1|:subseq(580000,120000) 51630 108381 + 220 M 9 27 G 0 6 M 47 141 5 0 2 I 0 5791 3 0 2 M 39 117 S 0 2 5 0 2 I 0 50553 3 0 2 S 1 1 M 9 27 G 0 3 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local gene 51631 108381 220 + . gene_id 2 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 51631 51804 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 51631 51804 . + . insertions 6 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 51805 51806 . + . intron_id 1 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 51805 57599 . + . intron_id 1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 57598 57599 . + . intron_id 0 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 57600 57718 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 57600 57718 . + . insertions 0 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice5 57719 57720 . + . intron_id 2 ; splice_site "GT"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local intron 57719 108275 . + . intron_id 2
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local splice3 108274 108275 . + . intron_id 1 ; splice_site "AG"
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local cds 108276 108381 . + .
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local exon 108276 108381 . + . insertions 3 ; deletions 0
gi|397456876|gb|JH738624.1|:subseq(580000,120000) exonerate:protein2genome:local similarity 51631 108381 220 + . alignment_id 2 ; Query SPP00000079_2.0 ; Align 51631 7 27 ; Align 51664 16 141 ; Align 57600 63 117 ; Align 108277 103 27 ; Align 108307 112 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis