Find start end points: [2,57598][495,70899] Score 309237
Recovering alignment: Alignment recovered Explicit read offfe 71%
genewise output
Score 892.27 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397456876|gb|JH738624.1|:subseq(580000,100000) is longer than
allowed name block (15). Truncating
SPP00002135_2.0 3 ETALKSLGNEGLFLFSSLDTDKDLYISPEEFKPIAEKLT
ETALK+LGNEG FLFSSLDT+ DLY+SPEEFKPIAEKLT
ETALKALGNEGFFLFSSLDTNNDLYLSPEEFKPIAEKLT
gi|397456876|gb57597 gagtagcgaggttctttcgaaagctcacggtacaggata
acctactgaagttttcctacaaatatgcaatactcaatc
gatggtgatgcttccccgctcttgcgctggcgaatggag
SPP00002135_2.0 42 VTPVSDFEEEETLDPNGETLSIV
VTPVS++EEEETLDP+GE LS+
G:G[ggt] VTPVSEYEEEETLDPSGEMLSVA
gi|397456876|gb57714 GGTAGGTA Intron 1 TAGGTgacgtgtggggacgcaggactgg
<1-----[57715:58555]-1> tcctcaaaaaactacggattctc
tttctacagagggtctggggtct
SPP00002135_2.0 66 AKFQPLLLETMTKSKDGFLG ISHVAL
AKFQPLL+ETMTKSKDGFLG ISHVAL
AKFQPLLMETMTKSKDGFLG ISHVAL
gi|397456876|gb58627 gatcctcagaaaaaaggtcgGTAAGTG Intron 2 CAGatcggc
catactttactcagaagttg<0-----[58687:59325]-0>tcatct
tacgcgcgaggggcacttaa ttcttg
SPP00002135_2.0 92 SGLRNWTAPATPVSVMSAKQFKAFLPPKNKLELGDPWWIIPSELNIFTG
SGLRNWTAPA PV+VM A+QFKAFLPPKNKLELGDPWWIIPSELNIFTG
SGLRNWTAPAAPVNVMFARQFKAFLPPKNKLELGDPWWIIPSELNIFTG
gi|397456876|gb59344 tgccatagcggcgagatgactagtcccaaacgcggcttaacagcaatag
cgtgagcccccctatttcgatacttccaaatatgacggttcgatattcg
tgcgcgggagccgcggtcggcattctagtggacctcggtctcagccccg
SPP00002135_2.0 141 YLSNNRFSKSQDLPRV ILIHKLLSMF
YLSNNRF + I+IHKLLSMF
YLSNNRFYPPAPKGKE IIIHKLLSMF
gi|397456876|gb59491 tctaacttccgcagagGTAAGAA Intron 3 CAGaaacactaat
atcaagtaccccagaa<0-----[59539:59863]-0>tttaattgtt
cttccgtctaccgcag ccccacgcgc
SPP00002135_2.0 167 HPRPFVKTRFAPQGAVACVQAISEFYYLIAL
HPRPFVKTRFAPQGAVAC+QA SEFYY +A
HPRPFVKTRFAPQGAVACIQASSEFYYTVAF
gi|397456876|gb59894 cccctgaactgccggggtacgaagtttaggt
acgcttacgtccagctcgtacggataactct
tacgtagcctgtactgcccgaccgtctccac
SPP00002135_2.0 198 IHAEFQLNEPPDFPFWFSPAQFT
IHAEFQLNEPPDFPFWFSP QFT
R:R[agg] IHAEFQLNEPPDFPFWFSPGQFT
gi|397456876|gb59987 AGGTAAGAA Intron 4 CAGGacggtctagccgtcttttcgcta
<2-----[59989:61210]-2> tacatataaccatctgtccgatc
tttgcggtgtatctcgcctcgca
SPP00002135_2.0 222 GHIVLSRDSSHVREFKLFVPNK S
GH++LS+DSSHVREFKLFVPN S
GHVILSKDSSHVREFKLFVPNN R:R[agg] S
gi|397456876|gb61281 gcgactagttcgcgtactgcaaAGGTACAGC Intron 5 CAGGt
gatttcaaccatgatatttcaa <2-----[61349:63591]-2> c
acccccattcttggcgctcacc c
SPP00002135_2.0 246 LNVDMEWLYGASESSSMEVDIGYLPQ
LNVDMEWLYGASESS+MEVDIGYLPQ
LNVDMEWLYGASESSNMEVDIGYLPQ
gi|397456876|gb63596 caggagtctggagaaaagggagtcccGTTGGTA Intron 6 TAG
tatatagtagcgaggatatatgatca<0-----[63674:64714]-0>
actcgagacggtacccgggcttccgg
SPP00002135_2.0 272 MELESSGPSIPSVIHDENGNVLDSRDPAGEPVQFVFEEIRWQQEMSWEE
MELES GPSIPSVIHDENGNV+DSRDP GEP+QFVFEEI WQQ+++WEE
MELESMGPSIPSVIHDENGNVIDSRDPTGEPIQFVFEEITWQQKITWEE
gi|397456876|gb64715 agtgtagctactgacggagagagaagcaggcactgtggaatccaaatgg
tatactgcctccttaaaagattaggaccgactatttaatcgaaatcgaa
ggaagggaccttgtctatatgtccaccgggccgtgtagacgggactgga
SPP00002135_2.0 321 AAQKLEVAMYPFKK VSYLPFTQAFER
AAQKLEVAMYPFKK VSYLPFTQAFER
AAQKLEVAMYPFKK VSYLPFTQAFER
gi|397456876|gb64862 ggcacgggatctaaGTAAGCA Intron 7 CAGgttcctacgtga
ccaatatctactaa<0-----[64904:66368]-0>tcatctcactag
gtgggatcgtgtga tgcgctaactga
SPP00002135_2.0 347 AKAEKKLVHSILLWGALDDQSCX
AKAE KLVHSILLWGALDDQSCX
AKAENKLVHSILLWGALDDQSCX G:G[ggt]
gi|397456876|gb66405 gaggaacgctacctggcggctttGGTGAGGA Intron 8 CAGGT
cacaaattactttggctaaacgg <1-----[66475:66972]-1>
aatgcgggcccgggcggccgcca
SPP00002135_2.0 371 SGRTLRETVLESSPVLALLNESFVSSWSLVKELEELQ
SGRTLRETVLESSP+LALLNESFVSSWSLVKELE+LQ
SGRTLRETVLESSPILALLNESFVSSWSLVKELEDLQ
gi|397456876|gb66975 tgcaccgagcgatcacgtcagatgaattcgagcggtc
cggctgacttagccttcttaagttgggcttaataata
gggtcggccgatgccctggtgctcccgaagggagcgg
SPP00002135_2.0 408 ARRQDKFSSQLAALHLEKYNFPVEMM
+R+++F +LA LHLEKYNFPVEMM
TKRENEFYRKLAELHLEKYNFPVEMM
gi|397456876|gb67086 GTAAGTG Intron 9 CAGaaagagttaacggcccgatatcggaa
<0-----[67086:68453]-0>cagaaatagatcatataaaatctatt
cgagtaccggagggcagaccctgggg
SPP00002135_2.0 434 ICLPNGTV IHHINANYFLDITSMKPE
ICLPNGTV IHHINANYFLDITSMKPE
ICLPNGTV IHHINANYFLDITSMKPE
gi|397456876|gb68532 atccagagGTACGTC Intron 10 CAGaccaagattcgaataacg
tgtcagct<0-----[68556:70735]-0>taatacaattatcctaca
cctctaag tccctccccgttttggca
SPP00002135_2.0 460 EVESSIFSFSSNFEDPSTATYLQFLKEGLQRAKPFLQ
EVESS+FSFS+NFEDPSTATYL+FLKEGL RAKPFLQ
EVESSVFSFSTNFEDPSTATYLRFLKEGLHRAKPFLQ
gi|397456876|gb70790 gggaagtattaatggctagatcctcaggccagacttc
ataggttgtccataacccccatgttaagtagcactta
atgcccctcacttattttgcccgcgggagcaaaccgg
//
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|397456876|gb|JH738624.1|:subseq(580000,100000).pep
ETALKALGNEGFFLFSSLDTNNDLYLSPEEFKPIAEKLTGVTPVSEYEEEETLDPSGEML
SVAAKFQPLLMETMTKSKDGFLGISHVALSGLRNWTAPAAPVNVMFARQFKAFLPPKNKL
ELGDPWWIIPSELNIFTGYLSNNRFYPPAPKGKEIIIHKLLSMFHPRPFVKTRFAPQGAV
ACIQASSEFYYTVAFRIHAEFQLNEPPDFPFWFSPGQFTGHVILSKDSSHVREFKLFVPN
NRSLNVDMEWLYGASESSNMEVDIGYLPQMELESMGPSIPSVIHDENGNVIDSRDPTGEP
IQFVFEEITWQQKITWEEAAQKLEVAMYPFKKVSYLPFTQAFERAKAENKLVHSILLWGA
LDDQSCXGSGRTLRETVLESSPILALLNESFVSSWSLVKELEDLQTKRENEFYRKLAELH
LEKYNFPVEMMICLPNGTVIHHINANYFLDITSMKPEEVESSVFSFSTNFEDPSTATYLR
FLKEGLHRAKPFLQ
//
>gi|397456876|gb|JH738624.1|:subseq(580000,100000).[57597:70900].sp
GAGACAGCTTTGAAGGCTCTGGGAAATGAGGGCTTTTTTCTCTTCTCCTCCCTGGACACT
AACAATGATCTGTACCTGAGCCCTGAGGAGTTCAAGCCAATAGCTGAGAAGTTAACGGGT
GTTACTCCTGTCTCTGAATACGAAGAGGAAGAGACGCTGGATCCCAGTGGGGAGATGCTG
TCTGTCGCTGCTAAATTCCAGCCCTTGCTCATGGAAACGATGACGAAGAGCAAAGACGGT
TTTCTAGGAATTTCTCACGTTGCTCTGTCTGGGCTCCGGAACTGGACGGCGCCAGCGGCC
CCCGTGAACGTGATGTTTGCCAGGCAGTTCAAAGCTTTTCTCCCTCCAAAGAATAAGCTG
GAACTCGGCGATCCCTGGTGGATTATCCCTAGCGAACTGAACATCTTCACCGGGTACCTT
TCTAACAACCGGTTTTACCCTCCAGCCCCCAAGGGCAAAGAGATCATCATCCACAAACTC
TTGAGCATGTTCCATCCACGCCCGTTTGTAAAGACCCGCTTTGCGCCTCAAGGCGCTGTG
GCCTGCATCCAGGCAAGCAGCGAGTTTTACTATACCGTCGCATTCAGGATTCATGCTGAG
TTCCAGTTGAATGAGCCTCCAGATTTCCCTTTCTGGTTCTCCCCTGGCCAGTTCACAGGA
CACGTCATCCTCTCCAAAGATTCTTCCCATGTTCGGGAGTTCAAGCTCTTTGTCCCAAAC
AACAGGTCCCTAAACGTTGACATGGAATGGCTATACGGGGCGAGTGAAAGCAGCAACATG
GAGGTGGACATTGGTTACCTCCCGCAGATGGAGTTAGAATCGATGGGGCCATCCATCCCT
TCTGTGATTCACGATGAAAATGGAAATGTGATTGACAGCAGAGACCCCACGGGGGAGCCC
ATCCAGTTTGTGTTTGAAGAGATAACCTGGCAGCAGAAAATCACTTGGGAGGAAGCGGCT
CAGAAGCTGGAAGTTGCCATGTATCCGTTTAAGAAAGTTTCGTACCTGCCCTTTACACAA
GCCTTTGAGAGAGCAAAAGCTGAGAACAAGCTGGTGCACTCCATCCTGCTGTGGGGCGCG
CTGGACGACCAGTCCTGCTGAGGTTCGGGGCGGACTCTCCGGGAGACCGTCCTGGAAAGT
TCGCCCATCCTCGCTTTGCTGAATGAGAGCTTTGTCAGCAGCTGGTCACTAGTGAAGGAG
CTAGAGGACTTGCAGACCAAGAGAGAGAATGAATTCTACAGGAAGCTAGCGGAGCTGCAC
CTAGAGAAATACAACTTCCCTGTGGAGATGATGATCTGCCTTCCCAATGGAACAGTGATT
CACCACATCAATGCCAACTACTTCCTGGATATTACTTCTATGAAGCCCGAAGAAGTTGAG
AGCAGCGTCTTCAGTTTCTCAACCAATTTTGAAGATCCTTCTACTGCGACCTACCTCCGG
TTCCTGAAGGAGGGACTGCACAGAGCAAAACCCTTCTTGCAG
//
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise match 57597 70900 892.27 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 57597 57714 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 57715 58555 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 58556 58686 0.00 + 2 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 58687 59325 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 59326 59538 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 59539 59863 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 59864 59988 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 59989 61210 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 61211 61348 0.00 + 1 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 61349 63591 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 63592 63673 0.00 + 1 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 63674 64714 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 64715 64903 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 64904 66368 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 66369 66474 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 66475 66972 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 66973 67085 0.00 + 2 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 67086 68453 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 68454 68555 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise intron 68556 70735 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 70736 70900 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
//
Find start end points: [1,17541][28,17622] Score 7731
Recovering alignment: Alignment recovered Explicit read offf 89%
genewise output
Score 22.31 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397456876|gb|JH738624.1|:subseq(580000,100000) is longer than
allowed name block (15). Truncating
SPP00002135_2.0 2 QETALKSLGNEGLFLFSSLDTDKDLYIS
QE L SL N SSL KDLYI+
QEGGLLSLSNAEACHHSSLQVKKDLYIN
gi|397456876|g-82461 cgggcctcaagggtcctatcgaagttaa
aaggttctgacacgaacgtataaatata
ggtacgttctagatttctaaaagcaccc
//
>gi|397456876|gb|JH738624.1|:subseq(580000,100000).pep
QEGGLLSLSNAEACHHSSLQVKKDLYIN
//
>gi|397456876|gb|JH738624.1|:subseq(580000,100000).[82461:82376].sp
CAGGAGGGTGGACTCCTGTCTCTTAGCAATGCAGAGGCATGTCATCATTCCAGTTTACAA
GTAAAAAAGGACTTATACATCAAC
//
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise match 82461 82378 22.31 - . gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,100000) GeneWise cds 82461 82378 0.00 - 0 gi|397456876|gb|JH738624.1|:subseq(580000,100000)-genewise-prediction-1
//