Find start end points: [6,51632][588,70899] Score 266357
Recovering alignment: Alignment recovered Explicit read offfe 96%
genewise output
Score 768.54 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397456876|gb|JH738624.1|:subseq(580000,120000) is longer than
allowed name block (15). Truncating
SPP00000079_2.0 7 GQRGPPSPG--PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHA
G+ PP PG P PP PP RA + A L + A AA AV ++
GRPAPPPPGSSPFPSPPRPPAERAMARAGLSRVAVAVAALAVLAALKYR
gi|397456876|gb51631 gccgccccgttctctcccccggcgagcggctcgggggggcggcggcatc
ggccccccgccctccccgcccagctcgcgtcgtctctcctcttcctaag
tcccgcgacccccccgcccccggcgggcgggcgcggggggcggcccgcg
SPP00000079_2.0 54 EAQAAARQE -LALKTLGTDGLFLFSS
ARQ+ ALK LG +G FLFSS
RDAEVARQQ ETALKALGNEGFFLFSS
gi|397456876|gb51778 cgggggaccGTACCAG Intron 1 TAGgagtagcgaggttcttt
gacatcgaa<0-----[51805:57596]-0>acctactgaagttttcc
gcgggaggg gatggtgatgcttcccc
SPP00000079_2.0 79 LDTDGDMYISPEEFKPIAEKLTG
LDT+ D+Y+SPEEFKPIAEKLTG
LDTNNDLYLSPEEFKPIAEKLTG S:S[agc]
gi|397456876|gb57648 cgaaagctcacggtacaggatagAGGTATGGA Intron 2 CAGC
tacaaatatgcaatactcaatcg <2-----[57719:57739]-2>
gctcttgcgctggcgaatggagt
SPP00000079_2.0 103 CSVTQTGVQWCSHSSLQPQLPWLNXSSCLSLL---
C+VT + + + +Q WL+ LSLL
CAVTWMDSEDMNVTCMQ----WLSLHF-LSLLPFG
gi|397456876|gb57741 tggatagaggaagatac tcttct ctccctg
gctcgtagaatatcgta gtctat tcttctg
tgggggctgtgtaatgg gtgatt tccgacg
SPP00000079_2.0 135 STPAASCEEEELPPDPSEETLTI
TP + EEEE DPS E L++
R:G[ggt] VTPVSEYEEEETL-DPSGEMLSV
gi|397456876|gb57831 GGTTAACC Intron 3 TAGGTgacgtgtggggac gcaggactg
<1-----[57832:58555]-1> tcctcaaaaaact acggattct
tttctacagaggg tctggggtc
SPP00000079_2.0 159 EARFQPLLPETMTKSKDGFLG VSRLA
A+FQPLL ETMTKSKDGFLG +S +A
AAKFQPLLMETMTKSKDGFLG ISHVA
gi|397456876|gb58624 ggatcctcagaaaaaaggtcgGTAAGTG Intron 4 CAGatcgg
ccatactttactcagaagttg<0-----[58687:59325]-0>tcatc
ttacgcgcgaggggcacttaa ttctt
SPP00000079_2.0 185 LSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFT
LSGLRNWTA A+P V+ R F+ FLPP + ELG+PWWIIPSEL++FT
LSGLRNWTAPAAPVNVMFARQFKAFLPPKNKLELGDPWWIIPSELNIFT
gi|397456876|gb59341 ctgccatagcggcgagatgactagtcccaaacgcggcttaacagcaata
tcgtgagcccccctatttcgatacttccaaatatgacggttcgatattc
gtgcgcgggagccgcggtcggcattctagtggacctcggtctcagcccc
SPP00000079_2.0 233 GYLSNNRFYPPPPKGKE VIIHRLLSM
GYLSNNRFYPP PKGKE +IIH+LLSM
GYLSNNRFYPPAPKGKE IIIHKLLSM
gi|397456876|gb59488 gtctaacttccgcagagGTAAGAA Intron 5 CAGaaacactaa
gatcaagtaccccagaa<0-----[59539:59863]-0>tttaattgt
gcttccgtctaccgcag ccccacgcg
SPP00000079_2.0 259 FHPRPFVKTRFAPQGAVACLTAISDFYYTVMF
FHPRPFVKTRFAPQGAVAC+ A S+FYYTV F
FHPRPFVKTRFAPQGAVACIQASSEFYYTVAF
gi|397456876|gb59891 tcccctgaactgccggggtacgaagtttaggt
tacgcttacgtccagctcgtacggataactct
ctacgtagcctgtactgcccgaccgtctccac
SPP00000079_2.0 291 IHAEFQLSEPPDFPFWFSPAQFT
IHAEFQL+EPPDFPFWFSP QFT
R:R[agg] IHAEFQLNEPPDFPFWFSPGQFT
gi|397456876|gb59987 AGGTAAGAA Intron 6 CAGGacggtctagccgtcttttcgcta
<2-----[59989:61210]-2> tacatataaccatctgtccgatc
tttgcggtgtatctcgcctcgca
SPP00000079_2.0 315 GHIILSKDATHVRDFRLFVPNH S
GH+ILSKD++HVR+F+LFVPN+ S
GHVILSKDSSHVREFKLFVPNN R:R[agg] S
gi|397456876|gb61281 gcgactagttcgcgtactgcaaAGGTACAGC Intron 7 CAGGt
gatttcaaccatgatatttcaa <2-----[61349:63591]-2> c
acccccattcttggcgctcacc c
SPP00000079_2.0 339 LNVDMEWLYGASESSNMEVDIGYIPQ
LNVDMEWLYGASESSNMEVDIGY+PQ
LNVDMEWLYGASESSNMEVDIGYLPQ
gi|397456876|gb63596 caggagtctggagaaaagggagtcccGTTGGTA Intron 8 TAG
tatatagtagcgaggatatatgatca<0-----[63674:64714]-0>
actcgagacggtacccgggcttccgg
SPP00000079_2.0 365 MELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEE
MELE+ GPS+PSVI DE+G++IDS P+GEP+QFVFEEI WQQ+++WEE
MELESMGPSIPSVIHDENGNVIDSRDPTGEPIQFVFEEITWQQKITWEE
gi|397456876|gb64715 agtgtagctactgacggagagagaagcaggcactgtggaatccaaatgg
tatactgcctccttaaaagattaggaccgactatttaatcgaaatcgaa
ggaagggaccttgtctatatgtccaccgggccgtgtagacgggactgga
SPP00000079_2.0 414 AARRLEVAMYPFKK VSYLPFTEAFDR
AA++LEVAMYPFKK VSYLPFT+AF+R
AAQKLEVAMYPFKK VSYLPFTQAFER
gi|397456876|gb64862 ggcacgggatctaaGTAAGCA Intron 9 CAGgttcctacgtga
ccaatatctactaa<0-----[64904:66368]-0>tcatctcactag
gtgggatcgtgtga tgcgctaactga
SPP00000079_2.0 440 AKAENKLVHSILLWGALDDQSCX
AKAENKLVHSILLWGALDDQSCX
AKAENKLVHSILLWGALDDQSCX G:G[ggt]
gi|397456876|gb66405 gaggaacgctacctggcggctttGGTGAGGA Intron 10 CAGGT
cacaaattactttggctaaacgg <1-----[66475:66972]-1>
aatgcgggcccgggcggccgcca
SPP00000079_2.0 464 SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ
SGRTLRETVLESSPIL LLNESF+S+WSLVKELE+LQ
SGRTLRETVLESSPILALLNESFVSSWSLVKELEDLQ
gi|397456876|gb66975 tgcaccgagcgatcacgtcagatgaattcgagcggtc
cggctgacttagccttcttaagttgggcttaataata
gggtcggccgatgccctggtgctcccgaagggagcgg
SPP00000079_2.0 501 NNQENSSHQKLAGLHLEKYSFPVEMM
+EN ++KLA LHLEKY+FPVEMM
TKRENEFYRKLAELHLEKYNFPVEMM
gi|397456876|gb67086 GTAAGTG Intron 11 CAGaaagagttaacggcccgatatcggaa
<0-----[67086:68453]-0>cagaaatagatcatataaaatctatt
cgagtaccggagggcagaccctgggg
SPP00000079_2.0 527 ICLPNGTV VHHINANYFLDITSVKPE
ICLPNGTV +HHINANYFLDITS+KPE
ICLPNGTV IHHINANYFLDITSMKPE
gi|397456876|gb68532 atccagagGTACGTC Intron 12 CAGaccaagattcgaataacg
tgtcagct<0-----[68556:70735]-0>taatacaattatcctaca
cctctaag tccctccccgttttggca
SPP00000079_2.0 553 EIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQ
E+ES++FSFS+ FEDPSTATY++FLKEGL R P LQ
EVESSVFSFSTNFEDPSTATYLRFLKEGLHRAKPFLQ
gi|397456876|gb70790 gggaagtattaatggctagatcctcaggccagacttc
ataggttgtccataacccccatgttaagtagcactta
atgcccctcacttattttgcccgcgggagcaaaccgg
//
Making a S in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|397456876|gb|JH738624.1|:subseq(580000,120000).pep
GRPAPPPPGSSPFPSPPRPPAERAMARAGLSRVAVAVAALAVLAALKYRRDAEVARQQET
ALKALGNEGFFLFSSLDTNNDLYLSPEEFKPIAEKLTGSCAVTWMDSEDMNVTCMQWLSL
HFLSLLPFGGVTPVSEYEEEETLDPSGEMLSVAAKFQPLLMETMTKSKDGFLGISHVALS
GLRNWTAPAAPVNVMFARQFKAFLPPKNKLELGDPWWIIPSELNIFTGYLSNNRFYPPAP
KGKEIIIHKLLSMFHPRPFVKTRFAPQGAVACIQASSEFYYTVAFRIHAEFQLNEPPDFP
FWFSPGQFTGHVILSKDSSHVREFKLFVPNNRSLNVDMEWLYGASESSNMEVDIGYLPQM
ELESMGPSIPSVIHDENGNVIDSRDPTGEPIQFVFEEITWQQKITWEEAAQKLEVAMYPF
KKVSYLPFTQAFERAKAENKLVHSILLWGALDDQSCXGSGRTLRETVLESSPILALLNES
FVSSWSLVKELEDLQTKRENEFYRKLAELHLEKYNFPVEMMICLPNGTVIHHINANYFLD
ITSMKPEEVESSVFSFSTNFEDPSTATYLRFLKEGLHRAKPFLQ
//
>gi|397456876|gb|JH738624.1|:subseq(580000,120000).[51631:70900].sp
GGTCGCCCCGCCCCGCCCCCGCCAGGCTCCTCCCCCTTCCCCTCCCCGCCCCGCCCCCCC
GCCGAGCGGGCCATGGCGCGGGCCGGGCTGTCGCGCGTGGCCGTGGCGGTGGCGGCGCTG
GCCGTGCTGGCCGCCCTCAAGTACCGGCGGGACGCGGAGGTGGCAAGGCAGCAGGAGACA
GCTTTGAAGGCTCTGGGAAATGAGGGCTTTTTTCTCTTCTCCTCCCTGGACACTAACAAT
GATCTGTACCTGAGCCCTGAGGAGTTCAAGCCAATAGCTGAGAAGTTAACGGGTAGCTGT
GCGGTGACGTGGATGGACAGTGAGGATATGAATGTAACATGTATGCAGTGGCTTTCGTTA
CATTTTCTTTCCCTCCTGCCATTCGGGGGTGTTACTCCTGTCTCTGAATACGAAGAGGAA
GAGACGCTGGATCCCAGTGGGGAGATGCTGTCTGTCGCTGCTAAATTCCAGCCCTTGCTC
ATGGAAACGATGACGAAGAGCAAAGACGGTTTTCTAGGAATTTCTCACGTTGCTCTGTCT
GGGCTCCGGAACTGGACGGCGCCAGCGGCCCCCGTGAACGTGATGTTTGCCAGGCAGTTC
AAAGCTTTTCTCCCTCCAAAGAATAAGCTGGAACTCGGCGATCCCTGGTGGATTATCCCT
AGCGAACTGAACATCTTCACCGGGTACCTTTCTAACAACCGGTTTTACCCTCCAGCCCCC
AAGGGCAAAGAGATCATCATCCACAAACTCTTGAGCATGTTCCATCCACGCCCGTTTGTA
AAGACCCGCTTTGCGCCTCAAGGCGCTGTGGCCTGCATCCAGGCAAGCAGCGAGTTTTAC
TATACCGTCGCATTCAGGATTCATGCTGAGTTCCAGTTGAATGAGCCTCCAGATTTCCCT
TTCTGGTTCTCCCCTGGCCAGTTCACAGGACACGTCATCCTCTCCAAAGATTCTTCCCAT
GTTCGGGAGTTCAAGCTCTTTGTCCCAAACAACAGGTCCCTAAACGTTGACATGGAATGG
CTATACGGGGCGAGTGAAAGCAGCAACATGGAGGTGGACATTGGTTACCTCCCGCAGATG
GAGTTAGAATCGATGGGGCCATCCATCCCTTCTGTGATTCACGATGAAAATGGAAATGTG
ATTGACAGCAGAGACCCCACGGGGGAGCCCATCCAGTTTGTGTTTGAAGAGATAACCTGG
CAGCAGAAAATCACTTGGGAGGAAGCGGCTCAGAAGCTGGAAGTTGCCATGTATCCGTTT
AAGAAAGTTTCGTACCTGCCCTTTACACAAGCCTTTGAGAGAGCAAAAGCTGAGAACAAG
CTGGTGCACTCCATCCTGCTGTGGGGCGCGCTGGACGACCAGTCCTGCTGAGGTTCGGGG
CGGACTCTCCGGGAGACCGTCCTGGAAAGTTCGCCCATCCTCGCTTTGCTGAATGAGAGC
TTTGTCAGCAGCTGGTCACTAGTGAAGGAGCTAGAGGACTTGCAGACCAAGAGAGAGAAT
GAATTCTACAGGAAGCTAGCGGAGCTGCACCTAGAGAAATACAACTTCCCTGTGGAGATG
ATGATCTGCCTTCCCAATGGAACAGTGATTCACCACATCAATGCCAACTACTTCCTGGAT
ATTACTTCTATGAAGCCCGAAGAAGTTGAGAGCAGCGTCTTCAGTTTCTCAACCAATTTT
GAAGATCCTTCTACTGCGACCTACCTCCGGTTCCTGAAGGAGGGACTGCACAGAGCAAAA
CCCTTCTTGCAG
//
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise match 51631 70900 774.53 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 51631 51804 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 51805 57596 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 57597 57718 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 57719 57739 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 57740 57831 0.00 + 1 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 57832 58555 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 58556 58686 0.00 + 2 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 58687 59325 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 59326 59538 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 59539 59863 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 59864 59988 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 59989 61210 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 61211 61348 0.00 + 1 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 61349 63591 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 63592 63673 0.00 + 1 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 63674 64714 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 64715 64903 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 64904 66368 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 66369 66474 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 66475 66972 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 66973 67085 0.00 + 2 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 67086 68453 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 68454 68555 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise intron 68556 70735 0.00 + . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 70736 70900 0.00 + 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
//
Find start end points: [14,16200][32,16254] Score 8389
Recovering alignment: Alignment recovered] Explicit read off
genewise output
Score 24.21 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397456876|gb|JH738624.1|:subseq(580000,120000) is longer than
allowed name block (15). Truncating
SPP00000079_2.0 15 GPAAQPPAPPRRRARSLAL
G A P PPRR AR+ AL
GEGADSPQPPRRAARAAAL
gi|397456876|-103802 gggggtcccccaggcgggc
gagcaccaccggccgccct
gggtcccgcccagatccgc
//
>gi|397456876|gb|JH738624.1|:subseq(580000,120000).pep
GEGADSPQPPRRAARAAAL
//
>gi|397456876|gb|JH738624.1|:subseq(580000,120000).[103802:103744].sp
GGGGAGGGGGCTGACTCCCCCCAGCCCCCCCGCAGAGCGGCACGTGCCGCCGCGCTC
//
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise match 103802 103746 24.21 - . gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
gi|397456876|gb|JH738624.1|:subseq(580000,120000) GeneWise cds 103802 103746 0.00 - 0 gi|397456876|gb|JH738624.1|:subseq(580000,120000)-genewise-prediction-1
//