TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00002131_2.0 # Protein # Selenoprotein K (SelK) # Softshell
turtle (Pelodiscus sinensis)
         (94 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397459294|gb|JH736207.1| Alligator mississippiensis unplaced ...    55   5e-07
gi|397460884|gb|JH734617.1| Alligator mississippiensis unplaced ...    32   4.8  

>gi|397459294|gb|JH736207.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-8455, whole genome shotgun sequence
          Length = 104849

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 7     GQVLDTQSRAPWSLSFITDFFWGIADFVVL 36
             GQVL  Q+RAPWSLS ITDFFW IADFVVL
Sbjct: 55098 GQVLGNQNRAPWSLSSITDFFWAIADFVVL 55187



 Score = 43.1 bits (100), Expect = 0.002
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = +1

Query: 34    VVLFFQSIVQPNLRRRGYTSSSNSRYDD 61
             ++  FQSI+QP+LRR+G TSSS SRYDD
Sbjct: 56686 IISSFQSIIQPDLRRKGNTSSSYSRYDD 56769


>gi|397460884|gb|JH734617.1| Alligator mississippiensis unplaced
            genomic scaffold scaffold-5851, whole genome shotgun
            sequence
          Length = 11861

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 2    VYISNGQVLDTQSRAPWSLSFITDFFWGI 30
            V+ S  Q+L T +RAP   S IT+F WG+
Sbjct: 1814 VHFSGNQILFTVARAPTQKSGITEFSWGV 1900


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.326    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,401,757
Number of Sequences: 14644
Number of extensions: 1751739
Number of successful extensions: 10317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 9847
Number of HSP's gapped (non-prelim): 963
length of query: 94
length of database: 724,747,747
effective HSP length: 69
effective length of query: 25
effective length of database: 723,737,311
effective search space: 18093432775
effective search space used: 18093432775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)