TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000076_2.0 # Protein # Selenoprotein K (SelK) # Human
(Homo sapiens)
         (94 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397459294|gb|JH736207.1| Alligator mississippiensis unplaced ...    48   8e-05

>gi|397459294|gb|JH736207.1| Alligator mississippiensis unplaced genomic
             scaffold scaffold-8455, whole genome shotgun sequence
          Length = 104849

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 7     GQVLDSRSQSPWRLSLITDFFWGIAEFVVL 36
             GQVL +++++PW LS ITDFFW IA+FVVL
Sbjct: 55098 GQVLGNQNRAPWSLSSITDFFWAIADFVVL 55187


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,721,582
Number of Sequences: 14644
Number of extensions: 1556611
Number of successful extensions: 11302
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 10757
Number of HSP's gapped (non-prelim): 1145
length of query: 94
length of database: 724,747,747
effective HSP length: 69
effective length of query: 25
effective length of database: 723,737,311
effective search space: 18093432775
effective search space used: 18093432775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)