Find start end points: [0,54273][90,57654] Score 50836
Recovering alignment: Alignment recoveredExplicit read offone 82%

genewise output
Score 146.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|397459294|gb|JH736207.1|:subseq(0,100000) is longer than
allowed name block (15). Truncating

SPP00002131_2.0    1 MVYISN                          QVLDTQSRAPWSLSFIT 
                     MVYISN                          QVL  Q+RAPWSLS IT 
                     MVYISN          G:G[gga]        QVLGNQNRAPWSLSSIT 
gi|397459294|gb54272 agtataGGTGAGAG  Intron 1   TAGGAcgtgacacgctatttaa 
                     ttatca <1-----[54291:55098]-1>  attgaaagccggtcctc 
                     gtcccc                          aggtcgtgttgtaataa 


SPP00002131_2.0   25 DFFWGIADFVVL                          FQSIVQPNLRR 
                     DFFW IADFVVL                          FQSI+QP+LRR 
                     DFFWAIADFVVL           F:F[ttt]       FQSIIQPDLRR 
gi|397459294|gb55152 gtttgaggtggtTTGTAAGTA  Intron 2   TAGTtcaaaccgtaa 
                     attgctcatttt  <2-----[55190:56696]-2> tagttacatgg 
                     tccgaaattgcg                          cgtttaacgag 


SPP00002131_2.0   49 RGYTSSSNSRYDDGR                          PPGNPRRR 
                     +G TSSS SRYDDGR                          PPGNPRRR 
                     KGNTSSSYSRYDDGR           G:G[ggg]       PPGNPRRR 
gi|397459294|gb56731 agaatttttatgggaGGGTATTGT  Intron 3   TAGGccgaccca 
                     agaccccacgaaagg  <2-----[56778:57570]-2> ccgacggg 
                     ggcatcataacttaa                          taattcta 


SPP00002131_2.0   73 MGRINH-GGGPSPPPMAGGG                              
                     MGRINH GGGPSPPPMAGGG                              
                     MGRINHFGGGPSPPPMAGGG                              
gi|397459294|gb57596 agcaactgggcacccagggg                              
                     tggtaatgggcgccctcggg                              
                     gtaatcttatctaacgtata                              


//
Making a G in phase 1 intron
Making a F in phase 2 intron
Making a G in phase 2 intron
>gi|397459294|gb|JH736207.1|:subseq(0,100000).pep
MVYISNGQVLGNQNRAPWSLSSITDFFWAIADFVVLFFQSIIQPDLRRKGNTSSSYSRYD
DGRGPPGNPRRRMGRINHFGGGPSPPPMAGGG
//
>gi|397459294|gb|JH736207.1|:subseq(0,100000).[54272:57655].sp
ATGGTTTACATCTCCAACGGACAAGTGTTGGGTAACCAGAATCGGGCTCCTTGGAGTTTA
TCATCTATAACAGATTTCTTCTGGGCAATAGCAGATTTTGTGGTCTTGTTTTTCCAGAGT
ATTATTCAACCAGACTTGAGAAGGAAGGGGAACACATCTTCCTCATATTCAAGATACGAT
GATGGAAGAGGGCCTCCAGGAAATCCTCGCCGTAGAATGGGTCGAATAAATCACTTTGGT
GGAGGTCCCAGTCCACCACCCATGGCTGGAGGTGGA
//
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	match	54272	57655	146.68	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	54272	54290	0.00	+	0	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	54291	55098	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	55099	55189	0.00	+	2	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	55190	56696	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	56697	56777	0.00	+	1	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	56778	57570	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	57571	57655	0.00	+	1	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
//