Find start end points: [0,54273][90,57651] Score 34814
Recovering alignment: Alignment recoveredExplicit read offone 82%

genewise output
Score 100.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|397459294|gb|JH736207.1|:subseq(0,100000) is longer than
allowed name block (15). Truncating

SPP00000076_2.0    1 MVYISN                          QVLDSRSQSPWRLSLIT 
                     MVYISN                          QVL +++++PW LS IT 
                     MVYISN          G:G[gga]        QVLGNQNRAPWSLSSIT 
gi|397459294|gb54272 agtataGGTGAGAG  Intron 1   TAGGAcgtgacacgctatttaa 
                     ttatca <1-----[54291:55098]-1>  attgaaagccggtcctc 
                     gtcccc                          aggtcgtgttgtaataa 


SPP00000076_2.0   25 DFFWGIAEFVVL                          FKTLLQQDVKK 
                     DFFW IA+FVVL                          F++++Q D+   
                     DFFWAIADFVVL           F:F[ttt]       FQSIIQPDL-R 
gi|397459294|gb55152 gtttgaggtggtTTGTAAGTA  Intron 2   TAGTtcaaaccgt a 
                     attgctcatttt  <2-----[55190:56696]-2> tagttacat g 
                     tccgaaattgcg                          cgtttaacg a 


SPP00000076_2.0   49 RRSYGNSSDSRYDDGR                          PPGNPPR 
                     R+   +SS SRYDDGR                          PPGNP R 
                     RKGNTSSSYSRYDDGR           G:G[ggg]       PPGNPRR 
gi|397459294|gb56728 aagaatttttatgggaGGGTATTGT  Intron 3   TAGGccgaccc 
                     gagaccccacgaaagg  <2-----[56778:57570]-2> ccgacgg 
                     gggcatcataacttaa                          taattct 


SPP00000076_2.0   73 RMGRINHLR-GPSPPPMAGG                              
                     RMGRINH   GPSPPPMAGG                              
                     RMGRINHFGGGPSPPPMAGG                              
gi|397459294|gb57593 aagcaactgggcacccaggg                              
                     gtggtaatgggcgccctcgg                              
                     agtaatcttatctaacgtat                              


//
Making a G in phase 1 intron
Making a F in phase 2 intron
Making a G in phase 2 intron
>gi|397459294|gb|JH736207.1|:subseq(0,100000).pep
MVYISNGQVLGNQNRAPWSLSSITDFFWAIADFVVLFFQSIIQPDLRRKGNTSSSYSRYD
DGRGPPGNPRRRMGRINHFGGGPSPPPMAGG
//
>gi|397459294|gb|JH736207.1|:subseq(0,100000).[54272:57652].sp
ATGGTTTACATCTCCAACGGACAAGTGTTGGGTAACCAGAATCGGGCTCCTTGGAGTTTA
TCATCTATAACAGATTTCTTCTGGGCAATAGCAGATTTTGTGGTCTTGTTTTTCCAGAGT
ATTATTCAACCAGACTTGAGAAGGAAGGGGAACACATCTTCCTCATATTCAAGATACGAT
GATGGAAGAGGGCCTCCAGGAAATCCTCGCCGTAGAATGGGTCGAATAAATCACTTTGGT
GGAGGTCCCAGTCCACCACCCATGGCTGGAGGT
//
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	match	54272	57652	100.45	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	54272	54290	0.00	+	0	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	54291	55098	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	55099	55189	0.00	+	2	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	55190	56696	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	56697	56777	0.00	+	1	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	intron	56778	57570	0.00	+	.	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1
gi|397459294|gb|JH736207.1|:subseq(0,100000)	GeneWise	cds	57571	57652	0.00	+	1	gi|397459294|gb|JH736207.1|:subseq(0,100000)-genewise-prediction-1